SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    999401 9j9i:W (2.46) BS01 rna N/A GO:0002181 ... Q8IDI5 40480224
    999402 9j9i:W (2.46) BS02 rna N/A GO:0002181 ... Q8IDI5 40480224
    999403 9j9i:X (2.46) BS01 rna N/A GO:0002181 ... Q8IB51 40480224
    999404 9j9i:Y (2.46) BS01 rna N/A GO:0003735 ... Q8IE82 40480224
    999405 9j9i:Y (2.46) BS02 rna N/A GO:0003735 ... Q8IE82 40480224
    999406 9j9i:Z (2.46) BS01 rna N/A GO:0002181 ... O77364 40480224
    999407 9j9i:Z (2.46) BS02 rna N/A GO:0002181 ... O77364 40480224
    999408 9j9i:a (2.46) BS01 rna N/A GO:0003735 ... Q8IBY4 40480224
    999409 9j9i:a (2.46) BS02 ZN N/A GO:0003735 ... Q8IBY4 40480224
    999410 9j9i:b (2.46) BS01 rna N/A GO:0002181 ... Q8I713 40480224
    999411 9j9i:c (2.46) BS01 rna N/A GO:0000448 ... C0H4L5 40480224
    999412 9j9i:c (2.46) BS02 rna N/A GO:0000448 ... C0H4L5 40480224
    999413 9j9i:c (2.46) BS03 ZN N/A GO:0000448 ... C0H4L5 40480224
    999414 9j9i:d (2.46) BS01 rna N/A GO:0002181 ... Q8II62 40480224
    999415 9j9i:e (2.46) BS01 rna N/A GO:0002181 ... C0H4H3 40480224
    999416 9j9i:e (2.46) BS02 rna N/A GO:0002181 ... C0H4H3 40480224
    999417 9j9i:f (2.46) BS01 rna N/A GO:0003729 ... Q8ID50 40480224
    999418 9j9i:f (2.46) BS02 ZN N/A GO:0003729 ... Q8ID50 40480224
    999419 9j9i:g (2.46) BS01 rna N/A GO:0003735 ... C6S3G4 40480224
    999420 9j9i:g (2.46) BS02 rna N/A GO:0003735 ... C6S3G4 40480224
    999421 9j9i:h (2.46) BS01 rna N/A GO:0003735 ... O96184 40480224
    999422 9j9i:h (2.46) BS02 ZN N/A GO:0003735 ... O96184 40480224
    999423 9j9i:i (2.46) BS01 rna N/A GO:0002181 ... O97231 40480224
    999424 9j9i:i (2.46) BS02 rna N/A GO:0002181 ... O97231 40480224
    999425 9j9i:i (2.46) BS03 ZN N/A GO:0002181 ... O97231 40480224
    999426 9j9i:k (2.46) BS01 rna N/A GO:0003735 ... O97313 40480224
    999427 9j9i:l (2.46) BS01 rna N/A GO:0000028 ... Q8IJD4 40480224
    999428 9j9i:m (2.46) BS01 rna N/A GO:0003723 ... Q8IKH8 40480224
    999429 9j9i:n (2.46) BS01 rna N/A GO:0003723 ... Q8I3R0 40480224
    999430 9j9i:o (2.46) BS01 rna N/A GO:0003723 ... Q8IIU8 40480224
    999431 9j9i:o (2.46) BS02 MG N/A GO:0003723 ... Q8IIU8 40480224
    999432 9j9i:p (2.46) BS01 rna N/A GO:0003723 ... Q8IL02 40480224
    999433 9j9i:q (2.46) BS01 rna N/A GO:0003735 ... Q8IDR9 40480224
    999434 9j9i:r (2.46) BS01 rna N/A GO:0003723 ... Q8IBN5 40480224
    999435 9j9i:s (2.46) BS01 rna N/A GO:0003735 ... Q8IET7 40480224
    999436 9j9i:t (2.46) BS01 rna N/A GO:0003735 ... O77395 40480224
    999437 9j9i:u (2.46) BS01 rna N/A GO:0002181 ... Q8IM10 40480224
    999438 9j9i:u (2.46) BS02 rna N/A GO:0002181 ... Q8IM10 40480224
    999439 9j9i:v (2.46) BS01 rna N/A GO:0000462 ... Q8IAX5 40480224
    999440 9j9i:w (2.46) BS01 rna N/A GO:0003735 ... Q8IK02 40480224
    999441 9j9i:x (2.46) BS01 rna N/A GO:0003723 ... Q8IBQ5 40480224
    999442 9j9i:y (2.46) BS01 rna N/A GO:0000028 ... A0A5K1K925 40480224
    999443 9j9i:z (2.46) BS01 rna N/A GO:0003735 ... O97248 40480224
    999444 9j9k:A (3.15) BS01 T83 N/A GO:0008194 ... A0A8K1ZRH3 40157902
    999445 9j9k:A (3.15) BS02 U2F N/A GO:0008194 ... A0A8K1ZRH3 40157902
    999446 9j9k:B (3.15) BS01 T83 N/A GO:0008194 ... A0A8K1ZRH3 40157902
    999447 9j9k:B (3.15) BS02 U2F N/A GO:0008194 ... A0A8K1ZRH3 40157902
    999448 9j9l:A (2.6) BS01 ZN N/A GO:0001530 ... P02931 N/A
    999449 9j9m:A (2.29) BS01 MN N/A GO:0001530 ... P02931 N/A
    999450 9j9m:B (2.29) BS01 MN N/A GO:0001530 ... P02931 N/A
    999451 9j9n:A (2.86) BS01 ZN N/A GO:0001530 ... P02931 N/A
    999452 9j9n:B (2.86) BS01 ZN N/A GO:0001530 ... P02931 N/A
    999453 9j9o:A (2.99) BS01 ZN N/A GO:0001530 ... P02931 N/A
    999454 9j9o:A (2.99) BS02 ZN N/A GO:0001530 ... P02931 N/A
    999455 9j9o:B (2.99) BS01 ZN N/A GO:0001530 ... P02931 N/A
    999456 9j9o:B (2.99) BS02 ZN N/A GO:0001530 ... P02931 N/A
    999457 9j9p:A (3.47) BS01 ZN N/A GO:0001530 ... P02931 N/A
    999458 9j9q:A (2.49) BS01 CU N/A GO:0000271 ... O27818 N/A
    999459 9j9q:B (2.49) BS01 CU N/A GO:0000271 ... O27818 N/A
    999460 9j9r:A (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999461 9j9r:B (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999462 9j9r:C (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999463 9j9r:D (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999464 9j9s:A (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999465 9j9s:B (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999466 9j9s:B (2.6) BS02 ZN N/A GO:0000271 ... O27818 N/A
    999467 9j9s:C (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999468 9j9s:D (2.6) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999469 9j9t:B (2.66) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999470 9j9v:A (2.04) BS01 FE N/A GO:0000271 ... O27818 N/A
    999471 9j9v:A (2.04) BS02 FE N/A GO:0000271 ... O27818 N/A
    999472 9j9v:B (2.04) BS01 FE N/A GO:0000271 ... O27818 N/A
    999473 9j9v:B (2.04) BS02 FE N/A GO:0000271 ... O27818 N/A
    999474 9j9v:C (2.04) BS01 FE N/A GO:0000271 ... O27818 N/A
    999475 9j9v:C (2.04) BS02 FE N/A GO:0000271 ... O27818 N/A
    999476 9j9v:D (2.04) BS01 FE N/A GO:0000271 ... O27818 N/A
    999477 9j9z:A (2.97) BS01 2YP N/A GO:0005506 ... A0AB38FS76 40593790
    999478 9ja1:A (2.98) BS01 rna N/A GO:0001172 ... P04050 39604363
    999479 9ja1:A (2.98) BS02 dna N/A GO:0001172 ... P04050 39604363
    999480 9ja1:A (2.98) BS03 dna N/A GO:0001172 ... P04050 39604363
    999481 9ja1:A (2.98) BS04 ZN N/A GO:0001172 ... P04050 39604363
    999482 9ja1:A (2.98) BS05 ZN N/A GO:0001172 ... P04050 39604363
    999483 9ja1:A (2.98) BS06 ATP N/A GO:0001172 ... P04050 39604363
    999484 9ja1:B (2.98) BS01 rna N/A GO:0001172 ... P08518 39604363
    999485 9ja1:B (2.98) BS02 dna N/A GO:0001172 ... P08518 39604363
    999486 9ja1:B (2.98) BS03 ZN N/A GO:0001172 ... P08518 39604363
    999487 9ja1:B (2.98) BS04 ATP N/A GO:0001172 ... P08518 39604363
    999488 9ja1:C (2.98) BS01 ZN N/A GO:0000428 ... P16370 39604363
    999489 9ja1:J (2.98) BS01 ZN N/A GO:0001172 ... P22139 39604363
    999490 9ja1:L (2.98) BS01 ZN N/A GO:0001172 ... P40422 39604363
    999491 9ja3:A (3.15) BS01 dna N/A GO:0000166 ... P04293 N/A
    999492 9ja3:A (3.15) BS02 dna N/A GO:0000166 ... P04293 N/A
    999493 9ja3:A (3.15) BS03 CA N/A GO:0000166 ... P04293 N/A
    999494 9ja3:A (3.15) BS04 AVP N/A GO:0000166 ... P04293 N/A
    999495 9ja3:B (3.15) BS01 dna N/A GO:0003677 ... P10226 N/A
    999496 9ja4:A (2.7) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999497 9ja4:A (2.7) BS02 ZN N/A GO:0000271 ... O27818 N/A
    999498 9ja4:B (2.7) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999499 9ja4:B (2.7) BS02 ZN N/A GO:0000271 ... O27818 N/A
    999500 9ja4:C (2.7) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999501 9ja4:C (2.7) BS02 ZN N/A GO:0000271 ... O27818 N/A
    999502 9ja4:D (2.7) BS01 ZN N/A GO:0000271 ... O27818 N/A
    999503 9ja4:D (2.7) BS02 ZN N/A GO:0000271 ... O27818 N/A
    999504 9ja8:A (2.4) BS01 A1L31 N/A GO:0004114 ... Q9Y233 39816787
    999505 9ja8:A (2.4) BS02 ZN N/A GO:0004114 ... Q9Y233 39816787
    999506 9ja8:A (2.4) BS03 MG N/A GO:0004114 ... Q9Y233 39816787
    999507 9ja8:B (2.4) BS01 A1L31 N/A GO:0004114 ... Q9Y233 39816787
    999508 9ja8:B (2.4) BS02 ZN N/A GO:0004114 ... Q9Y233 39816787
    999509 9jab:A (2.75) BS01 K N/A GO:0001917 ... Q16774 40715061
    999510 9jab:A (2.75) BS02 5GP N/A GO:0001917 ... Q16774 40715061
    999511 9jab:A (2.75) BS03 ADP N/A GO:0001917 ... Q16774 40715061
    999512 9jab:A (2.75) BS04 ALF N/A GO:0001917 ... Q16774 40715061
    999513 9jab:B (2.75) BS01 K N/A GO:0001917 ... Q16774 40715061
    999514 9jab:B (2.75) BS02 5GP N/A GO:0001917 ... Q16774 40715061
    999515 9jab:B (2.75) BS03 ADP N/A GO:0001917 ... Q16774 40715061
    999516 9jab:B (2.75) BS04 ALF N/A GO:0001917 ... Q16774 40715061
    999517 9jac:A (1.47) BS01 5GP N/A GO:0001917 ... Q16774 40715061
    999518 9jad:A (1.55) BS01 K N/A GO:0001917 ... Q16774 40715061
    999519 9jad:A (1.55) BS02 5GP N/A GO:0001917 ... Q16774 40715061
    999520 9jaf:A (1.9) BS01 5GP N/A GO:0001917 ... Q16774 40715061
    999521 9jaf:B (1.9) BS01 5GP N/A GO:0001917 ... Q16774 40715061
    999522 9jag:A (1.9) BS01 ADP N/A GO:0001917 ... Q16774 40715061
    999523 9jah:A (2.8) BS01 5GP N/A GO:0001917 ... Q16774 40715061
    999524 9jah:A (2.8) BS02 AGS N/A GO:0001917 ... Q16774 40715061
    999525 9jah:A (2.8) BS03 K N/A GO:0001917 ... Q16774 40715061
    999526 9jah:D (2.8) BS01 5GP N/A GO:0001917 ... Q16774 40715061
    999527 9jah:D (2.8) BS02 AGS N/A GO:0001917 ... Q16774 40715061
    999528 9jah:D (2.8) BS03 K N/A GO:0001917 ... Q16774 40715061
    999529 9jai:A (2.3) BS01 5GP N/A GO:0001917 ... Q16774 40715061
    999530 9jai:A (2.3) BS02 ADP N/A GO:0001917 ... Q16774 40715061
    999531 9jai:B (2.3) BS01 5GP N/A GO:0001917 ... Q16774 40715061
    999532 9jai:B (2.3) BS02 ADP N/A GO:0001917 ... Q16774 40715061
    999533 9jaj:A (2.65) BS01 GDP N/A GO:0001917 ... Q16774 40715061
    999534 9jaj:A (2.65) BS02 ADP N/A GO:0001917 ... Q16774 40715061
    999535 9jaj:B (2.65) BS01 GDP N/A GO:0001917 ... Q16774 40715061
    999536 9jak:A (1.29) BS01 GAL N/A GO:0019028 ... B3VSM1 40690515
    999537 9jal:A (3.03) BS01 peptide N/A GO:0006508 ... Q5IXV7 40262633
    999538 9jal:B (3.03) BS01 peptide N/A GO:0006508 ... Q5IXV7 40262633
    999539 9jam:A (2.98) BS01 peptide N/A GO:0006508 ... Q5IXV7 40262633
    999540 9jam:B (2.98) BS01 peptide N/A GO:0006508 ... Q5IXV7 40262633
    999541 9jan:A (2.93) BS01 peptide N/A GO:0006508 ... Q5IXV7 40262633
    999542 9jan:B (2.93) BS01 peptide N/A GO:0006508 ... Q5IXV7 40262633
    999543 9jao:B (3.1) BS01 dna N/A GO:0000786 ... P62799 40468067
    999544 9jao:B (3.1) BS02 dna N/A GO:0000786 ... P62799 40468067
    999545 9jao:C (3.1) BS01 dna N/A GO:0005524 ... Q9H4L7 40468067
    999546 9jao:C (3.1) BS02 dna N/A GO:0005524 ... Q9H4L7 40468067
    999547 9jao:C (3.1) BS03 peptide N/A GO:0005524 ... Q9H4L7 40468067
    999548 9jao:C (3.1) BS04 ADP N/A GO:0005524 ... Q9H4L7 40468067
    999549 9jao:C (3.1) BS05 BEF N/A GO:0005524 ... Q9H4L7 40468067
    999550 9jao:D (3.1) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40468067
    999551 9jao:D (3.1) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40468067
    999552 9jao:E (3.1) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40468067
    999553 9jao:E (3.1) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40468067
    999554 9jao:F (3.1) BS01 dna N/A GO:0000786 ... P62799 40468067
    999555 9jao:F (3.1) BS02 dna N/A GO:0000786 ... P62799 40468067
    999556 9jao:G (3.1) BS01 dna N/A GO:0000786 ... P06897 40468067
    999557 9jao:G (3.1) BS02 dna N/A GO:0000786 ... P06897 40468067
    999558 9jao:H (3.1) BS01 dna N/A GO:0000786 ... P02281 40468067
    999559 9jao:H (3.1) BS02 dna N/A GO:0000786 ... P02281 40468067
    999560 9jap:A (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999561 9jap:B (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999562 9jap:C (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999563 9jap:D (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999564 9jap:E (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999565 9jap:F (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999566 9jap:G (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999567 9jap:H (3.4) BS01 ATP N/A N/A A0AA94GZI5 40069208
    999568 9jav:A (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999569 9jav:A (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999570 9jav:B (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999571 9jav:B (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999572 9jav:C (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999573 9jav:C (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999574 9jav:D (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999575 9jav:D (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999576 9jav:E (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999577 9jav:E (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999578 9jav:F (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999579 9jav:F (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999580 9jav:G (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999581 9jav:G (2.6) BS02 APR N/A GO:0004022 ... I3E949 40818608
    999582 9jav:H (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999583 9jav:H (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999584 9jav:I (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999585 9jav:I (2.6) BS02 APR N/A GO:0004022 ... I3E949 40818608
    999586 9jav:J (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999587 9jav:J (2.6) BS02 NAD N/A GO:0004022 ... I3E949 40818608
    999588 9jaw:A (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999589 9jaw:B (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999590 9jaw:C (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999591 9jaw:D (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999592 9jaw:E (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999593 9jaw:F (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999594 9jaw:G (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999595 9jaw:H (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999596 9jaw:I (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999597 9jaw:J (2.8) BS01 MN N/A GO:0004022 ... I3E949 40818608
    999598 9jax:B (2.4) BS01 P4K N/A GO:0005829 ... I3EA59 40818608
    999599 9jax:C (2.4) BS01 P4K N/A GO:0005829 ... I3EA59 40818608
    999600 9jb2:A (2.9) BS01 peptide N/A GO:0016020 ... P05067 40090459

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).