SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    999801 9jfd:A (9.35) BS01 dna N/A N/A P06213 40603733
    999802 9jfd:B (9.35) BS01 dna N/A N/A P06213 40603733
    999803 9jff:A (2.15) BS01 33P N/A GO:0003824 ... A0A499W357 39366178
    999804 9jfh:A (2.56) BS01 A1EBS N/A N/A Q13526 N/A
    999805 9jfh:B (2.56) BS01 A1EBS N/A N/A Q13526 N/A
    999806 9jfj:A (2.49) BS01 ADP N/A GO:0000155 ... P14377 40062583
    999807 9jfj:B (2.49) BS01 ADP N/A GO:0000155 ... P14377 40062583
    999808 9jfj:C (2.49) BS01 ADP N/A GO:0000155 ... P14377 40062583
    999809 9jfj:D (2.49) BS01 ADP N/A GO:0000155 ... P14377 40062583
    999810 9jfk:R (3.23) BS01 peptide N/A N/A Q9UKP6 41062066
    999811 9jfk:R (3.23) BS02 CHO N/A N/A Q9UKP6 41062066
    999812 9jfk:R (3.23) BS03 CHO N/A N/A Q9UKP6 41062066
    999813 9jfm:A (3.13) BS01 MG N/A GO:0000287 ... P34913 N/A
    999814 9jfm:A (3.13) BS02 A1EBK N/A GO:0000287 ... P34913 N/A
    999815 9jfn:A (2.15) BS01 AG2 N/A GO:0004609 ... Q2UAM5 39321488
    999816 9jfn:B (2.15) BS01 AG2 N/A GO:0004609 ... Q2UAM5 39321488
    999817 9jfn:C (2.15) BS01 AG2 N/A GO:0004609 ... Q2UAM5 39321488
    999818 9jfn:D (2.15) BS01 AG2 N/A GO:0004609 ... Q2UAM5 39321488
    999819 9jfo:A (3.25) BS01 dna N/A N/A N/A 41027434
    999820 9jfo:A (3.25) BS02 dna N/A N/A N/A 41027434
    999821 9jfo:A (3.25) BS03 rna N/A N/A N/A 41027434
    999822 9jfp:A (2.96) BS01 dna N/A N/A N/A 41027434
    999823 9jfp:A (2.96) BS02 dna N/A N/A N/A 41027434
    999824 9jfp:A (2.96) BS03 rna N/A N/A N/A 41027434
    999825 9jfq:A (3.62) BS01 dna N/A N/A N/A 41027434
    999826 9jfq:A (3.62) BS02 rna N/A N/A N/A 41027434
    999827 9jfq:A (3.62) BS03 dna N/A N/A N/A 41027434
    999828 9jfs:A (2.67) BS01 rna N/A GO:0000794 ... Q12306 41492065
    999829 9jfs:A (2.67) BS02 dna N/A GO:0000794 ... Q12306 41492065
    999830 9jfs:A (2.67) BS03 dna N/A GO:0000794 ... Q12306 41492065
    999831 9jfu:R (3.23) BS01 A1L1E N/A GO:0004930 ... P46093 40211064
    999832 9jfy:R (3.21) BS01 peptide N/A GO:0004930 ... Q9Y5X5 40128413
    999833 9jg1:R (3.62) BS01 A1EBW N/A GO:0042597 ... P0ABE7
    Q9H3N8
    40877594
    999834 9jg3:A (3.2) BS01 rna N/A GO:0000794 ... Q12306 41492065
    999835 9jg3:A (3.2) BS02 dna N/A GO:0000794 ... Q12306 41492065
    999836 9jg3:A (3.2) BS03 dna N/A GO:0000794 ... Q12306 41492065
    999837 9jg7:A (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999838 9jg7:A (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999839 9jg7:C (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999840 9jg7:C (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999841 9jg7:E (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999842 9jg7:E (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999843 9jg7:G (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999844 9jg7:G (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999845 9jg7:I (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999846 9jg7:I (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999847 9jg7:K (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999848 9jg7:K (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999849 9jg7:M (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999850 9jg7:M (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999851 9jg7:O (1.93) BS01 HEC N/A GO:0005506 ... N/A N/A
    999852 9jg7:O (1.93) BS02 ZN N/A GO:0005506 ... N/A N/A
    999853 9jg9:B (2.97) BS01 peptide N/A N/A A0A5C6JKA9 N/A
    999854 9jg9:G (2.97) BS01 peptide N/A N/A A0A5C6HF51 N/A
    999855 9jgb:A (3.1) BS01 SO3 N/A GO:0006364 ... O50087 39918246
    999856 9jgc:A (2.01) BS01 ADN N/A GO:0006364 ... O50087 39918246
    999857 9jgc:A (2.01) BS02 SO3 N/A GO:0006364 ... O50087 39918246
    999858 9jgc:A (2.01) BS03 SO3 N/A GO:0006364 ... O50087 39918246
    999859 9jgd:A (2.2) BS01 MTA N/A GO:0006364 ... O50087 39918246
    999860 9jgf:A (2.2) BS01 9JT N/A GO:0005615 ... P02768 N/A
    999861 9jgf:B (2.2) BS01 9JT N/A GO:0005615 ... P02768 N/A
    999862 9jgk:A (3.6) BS01 A1EB7 N/A GO:0004930 ... P41595 N/A
    999863 9jgl:A (2.3) BS01 peptide N/A GO:0001836 ... P31947 N/A
    999864 9jgl:B (2.3) BS01 peptide N/A GO:0001836 ... P31947 N/A
    999865 9jgo:A (1.851) BS01 MG N/A GO:0004322 ... P02794 41587995
    999866 9jgp:A (1.53) BS01 MG N/A GO:0004322 ... P02794 41587995
    999867 9jgs:A (2.04) BS01 YDL N/A N/A P0C6U8 N/A
    999868 9jgs:B (2.04) BS01 YDL N/A N/A P0C6U8 N/A
    999869 9jgt:A (1.78) BS01 YDL N/A N/A P0C6X1 N/A
    999870 9jgt:B (1.78) BS01 YDL N/A N/A P0C6X1 N/A
    999871 9jgu:A (1.92) BS01 YDL N/A N/A P0C6X5 N/A
    999872 9jgu:B (1.92) BS01 YDL N/A N/A P0C6X5 N/A
    999873 9jgv:A (1.76) BS01 YDL N/A N/A P0DTC1 N/A
    999874 9jgv:B (1.76) BS01 YDL N/A N/A P0DTC1 N/A
    999875 9jgw:A (1.49) BS01 YDL N/A N/A P0DTC1 N/A
    999876 9jgw:B (1.49) BS01 YDL N/A N/A P0DTC1 N/A
    999877 9jgx:A (2.07) BS01 YDL N/A N/A P0DTD1 N/A
    999878 9jgy:A (1.92) BS01 YDL N/A N/A P0DTD1 N/A
    999879 9jgz:A (2.74) BS01 EIC N/A GO:0005267 ... Q9HB14 40307591
    999880 9jgz:A (2.74) BS02 D21 N/A GO:0005267 ... Q9HB14 40307591
    999881 9jgz:A (2.74) BS03 K N/A GO:0005267 ... Q9HB14 40307591
    999882 9jgz:A (2.74) BS04 K N/A GO:0005267 ... Q9HB14 40307591
    999883 9jgz:A (2.74) BS05 K N/A GO:0005267 ... Q9HB14 40307591
    999884 9jgz:A (2.74) BS06 K N/A GO:0005267 ... Q9HB14 40307591
    999885 9jgz:B (2.74) BS01 K N/A GO:0005267 ... Q9HB14 40307591
    999886 9jgz:B (2.74) BS02 K N/A GO:0005267 ... Q9HB14 40307591
    999887 9jgz:B (2.74) BS03 EIC N/A GO:0005267 ... Q9HB14 40307591
    999888 9jgz:B (2.74) BS04 D21 N/A GO:0005267 ... Q9HB14 40307591
    999889 9jgz:B (2.74) BS05 K N/A GO:0005267 ... Q9HB14 40307591
    999890 9jgz:B (2.74) BS06 K N/A GO:0005267 ... Q9HB14 40307591
    999891 9jh1:A (3.07) BS01 K N/A GO:0005267 ... Q9HB14 40307591
    999892 9jh1:A (3.07) BS02 K N/A GO:0005267 ... Q9HB14 40307591
    999893 9jh1:B (3.07) BS01 K N/A GO:0005267 ... Q9HB14 40307591
    999894 9jh1:B (3.07) BS02 K N/A GO:0005267 ... Q9HB14 40307591
    999895 9jh2:A (2.3) BS01 dna N/A N/A Q12857 41398321
    999896 9jh2:A (2.3) BS02 dna N/A N/A Q12857 41398321
    999897 9jh2:A (2.3) BS03 ZN N/A N/A Q12857 41398321
    999898 9jh3:R (2.93) BS01 A1D5N N/A GO:0001568 ... P35414 40314976
    999899 9jh4:A (3.2) BS01 ZN N/A N/A Q12857 41398321
    999900 9jh4:B (3.2) BS01 ZN N/A N/A Q12857 41398321
    999901 9jh4:C (3.2) BS01 ZN N/A N/A Q12857 41398321
    999902 9jh5:R (2.76) BS01 16C N/A GO:0001631 ... Q9NS75 40049228
    999903 9jh5:R (2.76) BS02 CLR N/A GO:0001631 ... Q9NS75 40049228
    999904 9jh5:R (2.76) BS03 CLR N/A GO:0001631 ... Q9NS75 40049228
    999905 9jh6:R (2.89) BS01 A1LXR N/A GO:0001631 ... Q9NS75 40049228
    999906 9jh7:A (3.4) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999907 9jh8:A (3.81) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999908 9jh8:A (3.81) BS02 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999909 9jh8:A (3.81) BS03 MN N/A GO:0003676 ... A0AAW4IU58 40675991
    999910 9jh9:A (3.42) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999911 9jh9:A (3.42) BS02 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999912 9jh9:A (3.42) BS03 MN N/A GO:0003676 ... A0AAW4IU58 40675991
    999913 9jh9:B (3.42) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999914 9jh9:B (3.42) BS02 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999915 9jh9:B (3.42) BS03 MN N/A GO:0003676 ... A0AAW4IU58 40675991
    999916 9jha:A (1.7) BS01 A1EB6 N/A GO:0003824 ... P0A3G3 40389608
    999917 9jhb:C (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999918 9jhb:D (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999919 9jhb:K (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999920 9jhb:L (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999921 9jhb:M (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999922 9jhb:N (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999923 9jhb:O (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999924 9jhb:P (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999925 9jhb:Q (3.39) BS01 rna N/A N/A Q72WF7 N/A
    999926 9jhc:H (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999927 9jhc:I (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999928 9jhc:J (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999929 9jhc:K (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999930 9jhc:L (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999931 9jhc:M (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999932 9jhc:N (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999933 9jhc:O (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999934 9jhc:P (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999935 9jhc:Q (3.09) BS01 rna N/A N/A Q72WF7 N/A
    999936 9jhd:A (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999937 9jhd:B (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999938 9jhd:C (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999939 9jhd:D (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999940 9jhd:E (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999941 9jhd:F (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999942 9jhd:G (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999943 9jhd:H (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999944 9jhd:I (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999945 9jhd:J (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999946 9jhd:K (2.98) BS01 rna N/A N/A Q72WF7 N/A
    999947 9jhe:A (2.55) BS01 NAD N/A GO:0003824 ... C7H5K9 39409040
    999948 9jhe:B (2.55) BS01 NAD N/A GO:0003824 ... C7H5K9 39409040
    999949 9jhe:C (2.55) BS01 NAD N/A GO:0003824 ... C7H5K9 39409040
    999950 9jhe:D (2.55) BS01 NAD N/A GO:0003824 ... C7H5K9 39409040
    999951 9jhe:E (2.55) BS01 NAD N/A GO:0003824 ... C7H5K9 39409040
    999952 9jhe:F (2.55) BS01 NAD N/A GO:0003824 ... C7H5K9 39409040
    999953 9jhj:R (3.2) BS01 18C N/A GO:0001540 ... P25090 40080544
    999954 9jhk:A (3.42) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999955 9jhk:A (3.42) BS02 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999956 9jhl:A (2.86) BS01 dna N/A GO:0003676 ... A0A343JEE2 40675991
    999957 9jhl:A (2.86) BS02 dna N/A GO:0003676 ... A0A343JEE2 40675991
    999958 9jhl:A (2.86) BS03 MN N/A GO:0003676 ... A0A343JEE2 40675991
    999959 9jhl:B (2.86) BS01 dna N/A GO:0003676 ... A0A343JEE2 40675991
    999960 9jhl:B (2.86) BS02 dna N/A GO:0003676 ... A0A343JEE2 40675991
    999961 9jhl:B (2.86) BS03 MN N/A GO:0003676 ... A0A343JEE2 40675991
    999962 9jhm:A (3.2) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999963 9jhm:A (3.2) BS02 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999964 9jhm:A (3.2) BS03 MN N/A GO:0003676 ... A0AAW4IU58 40675991
    999965 9jhn:A (3.0) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999966 9jhn:A (3.0) BS02 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999967 9jhn:A (3.0) BS03 MN N/A GO:0003676 ... A0AAW4IU58 40675991
    999968 9jhn:B (3.0) BS01 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999969 9jhn:B (3.0) BS02 dna N/A GO:0003676 ... A0AAW4IU58 40675991
    999970 9jhn:B (3.0) BS03 MN N/A GO:0003676 ... A0AAW4IU58 40675991
    999971 9jhs:E (5.02) BS01 dna N/A N/A P06213 40603733
    999972 9jhs:E (5.02) BS02 dna N/A N/A P06213 40603733
    999973 9jhs:F (5.02) BS01 dna N/A N/A P06213 40603733
    999974 9jhs:F (5.02) BS02 dna N/A N/A P06213 40603733
    999975 9jhu:A (1.996) BS01 A1L4A N/A GO:0003868 ... P93836 N/A
    999976 9jhu:A (1.996) BS02 CO N/A GO:0003868 ... P93836 N/A
    999977 9jhv:A (1.65) BS01 MTA N/A GO:0003824 ... Q9YAQ8 N/A
    999978 9jhw:A (1.4) BS01 HEM N/A GO:0004497 ... P18326 39752145
    999979 9jhw:A (1.4) BS02 DIF N/A GO:0004497 ... P18326 39752145
    999980 9jhx:A (2.86) BS01 DST N/A GO:0009820 ... A0A117NS29 39747040
    999981 9jhx:B (2.86) BS01 DST N/A GO:0009820 ... A0A117NS29 39747040
    999982 9jhx:C (2.86) BS01 DST N/A GO:0009820 ... A0A117NS29 39747040
    999983 9jhx:D (2.86) BS01 DST N/A GO:0009820 ... A0A117NS29 39747040
    999984 9jhy:B (1.9) BS01 CAA N/A GO:0003824 ... C7H5K9 39409040
    999985 9jhz:B (2.2) BS01 CAA N/A GO:0003824 ... C7H5K9 39409040
    999986 9jhz:B (2.2) BS02 NAD N/A GO:0003824 ... C7H5K9 39409040
    999987 9ji1:A (1.47) BS01 HEM N/A GO:0004497 ... P18326 39752145
    999988 9ji1:A (1.47) BS02 FLF N/A GO:0004497 ... P18326 39752145
    999989 9ji2:C (3.38) BS01 dna N/A GO:0000345 ... P9WGY9 39948061
    999990 9ji2:C (3.38) BS02 dna N/A GO:0000345 ... P9WGY9 39948061
    999991 9ji2:D (3.38) BS01 dna N/A GO:0000287 ... P9WGY7 39948061
    999992 9ji2:D (3.38) BS02 dna N/A GO:0000287 ... P9WGY7 39948061
    999993 9ji2:D (3.38) BS03 ZN N/A GO:0000287 ... P9WGY7 39948061
    999994 9ji2:D (3.38) BS04 ZN N/A GO:0000287 ... P9WGY7 39948061
    999995 9ji2:D (3.38) BS05 MG N/A GO:0000287 ... P9WGY7 39948061
    999996 9ji2:F (3.38) BS01 dna N/A GO:0000976 ... P9WGI1 39948061
    999997 9ji2:F (3.38) BS02 dna N/A GO:0000976 ... P9WGI1 39948061
    999998 9ji3:C (3.36) BS01 dna N/A GO:0000345 ... P9WGY9 N/A
    999999 9ji3:C (3.36) BS02 dna N/A GO:0000345 ... P9WGY9 N/A
    1000000 9ji3:D (3.36) BS01 dna N/A GO:0000287 ... P9WGY7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).