SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1000001 9ji3:D (3.36) BS02 dna N/A GO:0000287 ... P9WGY7 N/A
    1000002 9ji3:D (3.36) BS03 ZN N/A GO:0000287 ... P9WGY7 N/A
    1000003 9ji3:D (3.36) BS04 ZN N/A GO:0000287 ... P9WGY7 N/A
    1000004 9ji3:D (3.36) BS05 MG N/A GO:0000287 ... P9WGY7 N/A
    1000005 9ji3:F (3.36) BS01 dna N/A GO:0000976 ... P9WGI1 N/A
    1000006 9ji3:F (3.36) BS02 dna N/A GO:0000976 ... P9WGI1 N/A
    1000007 9ji3:J (3.36) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000008 9ji3:J (3.36) BS02 dna N/A GO:0000156 ... P71814 N/A
    1000009 9ji3:K (3.36) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000010 9ji3:K (3.36) BS02 dna N/A GO:0000156 ... P71814 N/A
    1000011 9ji4:C (3.54) BS01 dna N/A GO:0000345 ... P9WGY9 N/A
    1000012 9ji4:C (3.54) BS02 dna N/A GO:0000345 ... P9WGY9 N/A
    1000013 9ji4:D (3.54) BS01 dna N/A GO:0000287 ... P9WGY7 N/A
    1000014 9ji4:D (3.54) BS02 dna N/A GO:0000287 ... P9WGY7 N/A
    1000015 9ji4:D (3.54) BS03 ZN N/A GO:0000287 ... P9WGY7 N/A
    1000016 9ji4:D (3.54) BS04 MG N/A GO:0000287 ... P9WGY7 N/A
    1000017 9ji4:F (3.54) BS01 dna N/A GO:0000976 ... P9WGI1 N/A
    1000018 9ji4:F (3.54) BS02 dna N/A GO:0000976 ... P9WGI1 N/A
    1000019 9ji4:I (3.54) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000020 9ji4:J (3.54) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000021 9ji4:J (3.54) BS02 dna N/A GO:0000156 ... P71814 N/A
    1000022 9ji4:K (3.54) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000023 9ji4:M (3.54) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000024 9ji4:M (3.54) BS02 dna N/A GO:0000156 ... P71814 N/A
    1000025 9ji5:C (3.2) BS01 dna N/A GO:0000345 ... P9WGY9 N/A
    1000026 9ji5:C (3.2) BS02 dna N/A GO:0000345 ... P9WGY9 N/A
    1000027 9ji5:D (3.2) BS01 dna N/A GO:0000287 ... P9WGY7 N/A
    1000028 9ji5:D (3.2) BS02 dna N/A GO:0000287 ... P9WGY7 N/A
    1000029 9ji5:D (3.2) BS03 ZN N/A GO:0000287 ... P9WGY7 N/A
    1000030 9ji5:D (3.2) BS04 ZN N/A GO:0000287 ... P9WGY7 N/A
    1000031 9ji5:F (3.2) BS01 dna N/A GO:0000976 ... P9WGI1 N/A
    1000032 9ji5:F (3.2) BS02 dna N/A GO:0000976 ... P9WGI1 N/A
    1000033 9ji5:I (3.2) BS01 dna N/A GO:0003677 ... P9WGZ1 N/A
    1000034 9ji5:I (3.2) BS02 dna N/A GO:0003677 ... P9WGZ1 N/A
    1000035 9ji5:J (3.2) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000036 9ji5:J (3.2) BS02 dna N/A GO:0000156 ... P71814 N/A
    1000037 9ji5:K (3.2) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000038 9ji5:L (3.2) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000039 9ji5:L (3.2) BS02 dna N/A GO:0000156 ... P71814 N/A
    1000040 9ji5:N (3.2) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000041 9ji5:O (3.2) BS01 dna N/A GO:0000156 ... P71814 N/A
    1000042 9ji6:A (1.55) BS01 HEM N/A GO:0004497 ... P18326 39752145
    1000043 9ji6:A (1.55) BS02 DIF N/A GO:0004497 ... P18326 39752145
    1000044 9ji7:A (2.53) BS01 A1EBZ N/A GO:0016491 ... C3PTT2 40406958
    1000045 9ji7:A (2.53) BS02 NAP N/A GO:0016491 ... C3PTT2 40406958
    1000046 9ji7:B (2.53) BS01 A1EBZ N/A GO:0016491 ... C3PTT2 40406958
    1000047 9ji7:B (2.53) BS02 NAP N/A GO:0016491 ... C3PTT2 40406958
    1000048 9ji8:F (2.85) BS01 peptide N/A GO:0005737 ... P37840 N/A
    1000049 9ji8:G (2.85) BS01 peptide N/A GO:0005737 ... P37840 N/A
    1000050 9ji8:G (2.85) BS02 peptide N/A GO:0005737 ... P37840 N/A
    1000051 9ji8:L (2.85) BS01 peptide N/A GO:0005737 ... P37840 N/A
    1000052 9ji8:M (2.85) BS01 peptide N/A GO:0005737 ... P37840 N/A
    1000053 9ji8:M (2.85) BS02 peptide N/A GO:0005737 ... P37840 N/A
    1000054 9jid:A (2.78) BS01 NIO N/A GO:0004930 ... P49019 N/A
    1000055 9jip:A (1.68) BS01 HEM N/A GO:0004497 ... P18326 39752145
    1000056 9jip:A (1.68) BS02 FLF N/A GO:0004497 ... P18326 39752145
    1000057 9jiq:A (1.78) BS01 A1L36 N/A N/A P02766 39761163
    1000058 9jiq:A (1.78) BS02 A1L36 N/A N/A P02766 39761163
    1000059 9jiq:B (1.78) BS01 A1L36 N/A N/A P02766 39761163
    1000060 9jiq:B (1.78) BS02 A1L36 N/A N/A P02766 39761163
    1000061 9jir:A (1.3) BS01 A1L37 N/A N/A P02766 39761163
    1000062 9jir:A (1.3) BS02 A1L37 N/A N/A P02766 39761163
    1000063 9jir:B (1.3) BS01 A1L37 N/A N/A P02766 39761163
    1000064 9jis:A (1.41) BS01 A1L38 N/A N/A P02766 39761163
    1000065 9jis:B (1.41) BS01 A1L38 N/A N/A P02766 39761163
    1000066 9jiy:A (1.2) BS01 ZN N/A GO:0001516 ... P14174 40745177
    1000067 9jiy:A (1.2) BS02 CO3 N/A GO:0001516 ... P14174 40745177
    1000068 9jiy:B (1.2) BS01 CO3 N/A GO:0001516 ... P14174 40745177
    1000069 9jiy:B (1.2) BS02 ZN N/A GO:0001516 ... P14174 40745177
    1000070 9jiy:C (1.2) BS01 CO3 N/A GO:0001516 ... P14174 40745177
    1000071 9jiy:C (1.2) BS02 ZN N/A GO:0001516 ... P14174 40745177
    1000072 9jiz:A (1.3) BS01 ZN N/A GO:0001516 ... P14174 40745177
    1000073 9jiz:A (1.3) BS02 CO3 N/A GO:0001516 ... P14174 40745177
    1000074 9jiz:B (1.3) BS01 CO3 N/A GO:0001516 ... P14174 40745177
    1000075 9jiz:B (1.3) BS02 ZN N/A GO:0001516 ... P14174 40745177
    1000076 9jiz:C (1.3) BS01 CO3 N/A GO:0001516 ... P14174 40745177
    1000077 9jiz:C (1.3) BS02 ZN N/A GO:0001516 ... P14174 40745177
    1000078 9jj0:A (1.25) BS01 CO3 N/A GO:0001516 ... P14174 40745177
    1000079 9jj0:B (1.25) BS01 CO3 N/A GO:0001516 ... P14174 40745177
    1000080 9jj0:C (1.25) BS01 CO3 N/A GO:0001516 ... P14174 40745177
    1000081 9jj1:A (2.72) BS01 ZN N/A GO:0005385 ... Q99726 N/A
    1000082 9jj1:A (2.72) BS02 ZN N/A GO:0005385 ... Q99726 N/A
    1000083 9jj1:A (2.72) BS03 AV0 N/A GO:0005385 ... Q99726 N/A
    1000084 9jj1:A (2.72) BS04 ZN N/A GO:0005385 ... Q99726 N/A
    1000085 9jj1:B (2.72) BS01 ZN N/A GO:0005385 ... Q99726 N/A
    1000086 9jj1:B (2.72) BS02 ZN N/A GO:0005385 ... Q99726 N/A
    1000087 9jj1:B (2.72) BS03 ZN N/A GO:0005385 ... Q99726 N/A
    1000088 9jj1:B (2.72) BS04 ZN N/A GO:0005385 ... Q99726 N/A
    1000089 9jj1:B (2.72) BS05 AV0 N/A GO:0005385 ... Q99726 N/A
    1000090 9jj4:A (2.6) BS01 NAP N/A GO:0016491 ... C3PTT2 40406958
    1000091 9jj4:A (2.6) BS02 E8T N/A GO:0016491 ... C3PTT2 40406958
    1000092 9jj4:B (2.6) BS01 E8T N/A GO:0016491 ... C3PTT2 40406958
    1000093 9jj4:B (2.6) BS02 NAP N/A GO:0016491 ... C3PTT2 40406958
    1000094 9jj5:A (1.71) BS01 A1EB0 N/A GO:0000082 ... P24941 N/A
    1000095 9jj7:A (1.8) BS01 peptide N/A GO:0008233 ... P0DTD1 N/A
    1000096 9jj8:0 (2.79) BS01 CLA N/A GO:0009765 ... R1CV07 N/A
    1000097 9jj8:0 (2.79) BS02 A86 N/A GO:0009765 ... R1CV07 N/A
    1000098 9jj8:0 (2.79) BS03 A1EB1 N/A GO:0009765 ... R1CV07 N/A
    1000099 9jj8:0 (2.79) BS04 A1EB1 N/A GO:0009765 ... R1CV07 N/A
    1000100 9jj8:0 (2.79) BS05 A86 N/A GO:0009765 ... R1CV07 N/A
    1000101 9jj8:0 (2.79) BS06 A1EB1 N/A GO:0009765 ... R1CV07 N/A
    1000102 9jj8:0 (2.79) BS07 A86 N/A GO:0009765 ... R1CV07 N/A
    1000103 9jj8:0 (2.79) BS08 A1EB1 N/A GO:0009765 ... R1CV07 N/A
    1000104 9jj8:0 (2.79) BS09 A86 N/A GO:0009765 ... R1CV07 N/A
    1000105 9jj8:0 (2.79) BS10 A86 N/A GO:0009765 ... R1CV07 N/A
    1000106 9jj8:0 (2.79) BS11 CLA N/A GO:0009765 ... R1CV07 N/A
    1000107 9jj8:0 (2.79) BS12 CLA N/A GO:0009765 ... R1CV07 N/A
    1000108 9jj8:0 (2.79) BS13 CLA N/A GO:0009765 ... R1CV07 N/A
    1000109 9jj8:0 (2.79) BS14 CLA N/A GO:0009765 ... R1CV07 N/A
    1000110 9jj8:0 (2.79) BS15 KC2 N/A GO:0009765 ... R1CV07 N/A
    1000111 9jj8:0 (2.79) BS16 CLA N/A GO:0009765 ... R1CV07 N/A
    1000112 9jj8:0 (2.79) BS17 KC2 N/A GO:0009765 ... R1CV07 N/A
    1000113 9jj8:0 (2.79) BS18 KC2 N/A GO:0009765 ... R1CV07 N/A
    1000114 9jj8:0 (2.79) BS19 CLA N/A GO:0009765 ... R1CV07 N/A
    1000115 9jj8:0 (2.79) BS20 KC2 N/A GO:0009765 ... R1CV07 N/A
    1000116 9jj8:0 (2.79) BS21 CLA N/A GO:0009765 ... R1CV07 N/A
    1000117 9jj8:0 (2.79) BS22 A1ECV N/A GO:0009765 ... R1CV07 N/A
    1000118 9jj8:0 (2.79) BS23 CLA N/A GO:0009765 ... R1CV07 N/A
    1000119 9jj8:0 (2.79) BS24 CLA N/A GO:0009765 ... R1CV07 N/A
    1000120 9jj8:1 (2.79) BS01 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000121 9jj8:1 (2.79) BS02 A86 N/A GO:0009507 ... R1CMT6 N/A
    1000122 9jj8:1 (2.79) BS03 A86 N/A GO:0009507 ... R1CMT6 N/A
    1000123 9jj8:1 (2.79) BS04 DD6 N/A GO:0009507 ... R1CMT6 N/A
    1000124 9jj8:1 (2.79) BS05 A1EB1 N/A GO:0009507 ... R1CMT6 N/A
    1000125 9jj8:1 (2.79) BS06 A86 N/A GO:0009507 ... R1CMT6 N/A
    1000126 9jj8:1 (2.79) BS07 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000127 9jj8:1 (2.79) BS08 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000128 9jj8:1 (2.79) BS09 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000129 9jj8:1 (2.79) BS10 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000130 9jj8:1 (2.79) BS11 KC2 N/A GO:0009507 ... R1CMT6 N/A
    1000131 9jj8:1 (2.79) BS12 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000132 9jj8:1 (2.79) BS13 KC2 N/A GO:0009507 ... R1CMT6 N/A
    1000133 9jj8:1 (2.79) BS14 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000134 9jj8:1 (2.79) BS15 A1ECV N/A GO:0009507 ... R1CMT6 N/A
    1000135 9jj8:1 (2.79) BS16 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000136 9jj8:1 (2.79) BS17 CLA N/A GO:0009507 ... R1CMT6 N/A
    1000137 9jj8:2 (2.79) BS01 A86 N/A GO:0009507 ... R1CGG7 N/A
    1000138 9jj8:2 (2.79) BS02 DD6 N/A GO:0009507 ... R1CGG7 N/A
    1000139 9jj8:2 (2.79) BS03 A1EB1 N/A GO:0009507 ... R1CGG7 N/A
    1000140 9jj8:2 (2.79) BS04 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000141 9jj8:2 (2.79) BS05 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000142 9jj8:2 (2.79) BS06 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000143 9jj8:2 (2.79) BS07 A1ECV N/A GO:0009507 ... R1CGG7 N/A
    1000144 9jj8:2 (2.79) BS08 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000145 9jj8:2 (2.79) BS09 KC2 N/A GO:0009507 ... R1CGG7 N/A
    1000146 9jj8:2 (2.79) BS10 KC2 N/A GO:0009507 ... R1CGG7 N/A
    1000147 9jj8:2 (2.79) BS11 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000148 9jj8:2 (2.79) BS12 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000149 9jj8:2 (2.79) BS13 KC2 N/A GO:0009507 ... R1CGG7 N/A
    1000150 9jj8:2 (2.79) BS14 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000151 9jj8:2 (2.79) BS15 CLA N/A GO:0009507 ... R1CGG7 N/A
    1000152 9jj8:3 (2.79) BS01 DD6 N/A GO:0009765 ... R1DAV6 N/A
    1000153 9jj8:3 (2.79) BS02 A1EB1 N/A GO:0009765 ... R1DAV6 N/A
    1000154 9jj8:3 (2.79) BS03 DD6 N/A GO:0009765 ... R1DAV6 N/A
    1000155 9jj8:3 (2.79) BS04 A86 N/A GO:0009765 ... R1DAV6 N/A
    1000156 9jj8:3 (2.79) BS05 A86 N/A GO:0009765 ... R1DAV6 N/A
    1000157 9jj8:3 (2.79) BS06 A86 N/A GO:0009765 ... R1DAV6 N/A
    1000158 9jj8:3 (2.79) BS07 A86 N/A GO:0009765 ... R1DAV6 N/A
    1000159 9jj8:3 (2.79) BS08 A1EB1 N/A GO:0009765 ... R1DAV6 N/A
    1000160 9jj8:3 (2.79) BS09 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000161 9jj8:3 (2.79) BS10 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000162 9jj8:3 (2.79) BS11 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000163 9jj8:3 (2.79) BS12 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000164 9jj8:3 (2.79) BS13 KC2 N/A GO:0009765 ... R1DAV6 N/A
    1000165 9jj8:3 (2.79) BS14 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000166 9jj8:3 (2.79) BS15 KC2 N/A GO:0009765 ... R1DAV6 N/A
    1000167 9jj8:3 (2.79) BS16 KC2 N/A GO:0009765 ... R1DAV6 N/A
    1000168 9jj8:3 (2.79) BS17 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000169 9jj8:3 (2.79) BS18 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000170 9jj8:3 (2.79) BS19 KC2 N/A GO:0009765 ... R1DAV6 N/A
    1000171 9jj8:3 (2.79) BS20 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000172 9jj8:3 (2.79) BS21 CLA N/A GO:0009765 ... R1DAV6 N/A
    1000173 9jj8:3 (2.79) BS22 A86 N/A GO:0009765 ... R1DAV6 N/A
    1000174 9jj8:4 (2.79) BS01 A1EB1 N/A GO:0009507 ... R1EIA6 N/A
    1000175 9jj8:4 (2.79) BS02 A1EB1 N/A GO:0009507 ... R1EIA6 N/A
    1000176 9jj8:4 (2.79) BS03 A1EB1 N/A GO:0009507 ... R1EIA6 N/A
    1000177 9jj8:4 (2.79) BS04 A1EB1 N/A GO:0009507 ... R1EIA6 N/A
    1000178 9jj8:4 (2.79) BS05 A86 N/A GO:0009507 ... R1EIA6 N/A
    1000179 9jj8:4 (2.79) BS06 A86 N/A GO:0009507 ... R1EIA6 N/A
    1000180 9jj8:4 (2.79) BS07 DD6 N/A GO:0009507 ... R1EIA6 N/A
    1000181 9jj8:4 (2.79) BS08 DD6 N/A GO:0009507 ... R1EIA6 N/A
    1000182 9jj8:4 (2.79) BS09 A86 N/A GO:0009507 ... R1EIA6 N/A
    1000183 9jj8:4 (2.79) BS10 A86 N/A GO:0009507 ... R1EIA6 N/A
    1000184 9jj8:4 (2.79) BS11 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000185 9jj8:4 (2.79) BS12 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000186 9jj8:4 (2.79) BS13 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000187 9jj8:4 (2.79) BS14 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000188 9jj8:4 (2.79) BS15 A1ECV N/A GO:0009507 ... R1EIA6 N/A
    1000189 9jj8:4 (2.79) BS16 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000190 9jj8:4 (2.79) BS17 KC2 N/A GO:0009507 ... R1EIA6 N/A
    1000191 9jj8:4 (2.79) BS18 KC2 N/A GO:0009507 ... R1EIA6 N/A
    1000192 9jj8:4 (2.79) BS19 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000193 9jj8:4 (2.79) BS20 KC2 N/A GO:0009507 ... R1EIA6 N/A
    1000194 9jj8:4 (2.79) BS21 A1ECV N/A GO:0009507 ... R1EIA6 N/A
    1000195 9jj8:4 (2.79) BS22 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000196 9jj8:4 (2.79) BS23 CLA N/A GO:0009507 ... R1EIA6 N/A
    1000197 9jj8:4 (2.79) BS24 KC2 N/A GO:0009507 ... R1EIA6 N/A
    1000198 9jj8:5 (2.79) BS01 A86 N/A GO:0009507 ... R1DCN2 N/A
    1000199 9jj8:5 (2.79) BS02 KC2 N/A GO:0009507 ... R1DCN2 N/A
    1000200 9jj8:5 (2.79) BS03 A86 N/A GO:0009507 ... R1DCN2 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).