SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001201 9jn3:A (2.4) BS01 UPG N/A GO:0003824 ... A0ACD6BA10 N/A
    1001202 9jn3:A (2.4) BS02 RAB N/A GO:0003824 ... A0ACD6BA10 N/A
    1001203 9jn3:B (2.4) BS01 UPG N/A GO:0003824 ... A0ACD6BA10 N/A
    1001204 9jn3:B (2.4) BS02 RAB N/A GO:0003824 ... A0ACD6BA10 N/A
    1001205 9jn4:A (1.81) BS01 HEM N/A N/A A8CF72 N/A
    1001206 9jn4:B (1.81) BS01 HEM N/A N/A A8CF72 N/A
    1001207 9jn4:C (1.81) BS01 HEM N/A N/A A8CF72 N/A
    1001208 9jn4:D (1.81) BS01 HEM N/A N/A A8CF72 N/A
    1001209 9jn5:A (2.0) BS01 HEM N/A N/A A8CF72 N/A
    1001210 9jn5:A (2.0) BS02 HEM N/A N/A A8CF72 N/A
    1001211 9jn5:B (2.0) BS01 HEM N/A N/A A8CF72 N/A
    1001212 9jn5:C (2.0) BS01 HEM N/A N/A A8CF72 N/A
    1001213 9jn5:D (2.0) BS01 HEM N/A N/A A8CF72 N/A
    1001214 9jn6:A (1.72) BS01 HEM N/A N/A A8CF72 N/A
    1001215 9jn6:A (1.72) BS02 A1ECN N/A N/A A8CF72 N/A
    1001216 9jn6:B (1.72) BS01 HEM N/A N/A A8CF72 N/A
    1001217 9jn6:B (1.72) BS02 A1ECN N/A N/A A8CF72 N/A
    1001218 9jn6:B (1.72) BS03 HEM N/A N/A A8CF72 N/A
    1001219 9jn6:C (1.72) BS01 HEM N/A N/A A8CF72 N/A
    1001220 9jn6:D (1.72) BS01 HEM N/A N/A A8CF72 N/A
    1001221 9jn6:D (1.72) BS02 A1ECN N/A N/A A8CF72 N/A
    1001222 9jn6:D (1.72) BS03 HEM N/A N/A A8CF72 N/A
    1001223 9jn8:A (2.12) BS01 FES N/A N/A D5AV11 39924633
    1001224 9jn8:B (2.12) BS01 FES N/A N/A D5AV11 39924633
    1001225 9jn8:C (2.12) BS01 FES N/A N/A D5AV11 39924633
    1001226 9jn9:A (3.36) BS01 ZN N/A GO:0004521 ... P0C7P3 40464691
    1001227 9jna:A (2.4) BS01 DWZ N/A GO:0008800 ... P52682 N/A
    1001228 9jna:B (2.4) BS01 DWZ N/A GO:0008800 ... P52682 N/A
    1001229 9jnb:A (2.2) BS01 ID1 N/A GO:0008800 ... P52682 N/A
    1001230 9jne:A (2.5) BS01 DRW N/A GO:0008800 ... P52682 N/A
    1001231 9jne:B (2.5) BS01 DRW N/A GO:0008800 ... P52682 N/A
    1001232 9jnf:A (2.32) BS01 2RG N/A GO:0008800 ... P52682 N/A
    1001233 9jnf:B (2.32) BS01 2RG N/A GO:0008800 ... P52682 N/A
    1001234 9jng:A (2.26) BS01 DGE N/A GO:0008800 ... P52682 N/A
    1001235 9jng:B (2.26) BS01 DGE N/A GO:0008800 ... P52682 N/A
    1001236 9jni:A (1.92) BS01 peptide N/A GO:0008270 ... Q9P0J7 40875847
    1001237 9jni:A (1.92) BS02 ZN N/A GO:0008270 ... Q9P0J7 40875847
    1001238 9jni:A (1.92) BS03 ZN N/A GO:0008270 ... Q9P0J7 40875847
    1001239 9jni:A (1.92) BS04 ZN N/A GO:0008270 ... Q9P0J7 40875847
    1001240 9jni:A (1.92) BS05 ZN N/A GO:0008270 ... Q9P0J7 40875847
    1001241 9jnk:C (3.03) BS01 dna N/A GO:0000166 ... P07065 N/A
    1001242 9jnk:D (3.03) BS01 dna N/A GO:0000166 ... P07065 N/A
    1001243 9jnl:A (2.4) BS01 peptide N/A GO:0006402 ... Q92600 N/A
    1001244 9jnm:A (2.2) BS01 peptide N/A GO:0006402 ... Q92600 N/A
    1001245 9jnn:B (5.4) BS01 7RC N/A GO:0005216 ... Q00960 39855198
    1001246 9jnn:D (5.4) BS01 7RC N/A GO:0005216 ... Q00960 39855198
    1001247 9jnp:A (2.3) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001248 9jnp:A (2.3) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001249 9jnp:B (2.3) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001250 9jnp:B (2.3) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001251 9jnp:C (2.3) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001252 9jnp:C (2.3) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001253 9jnp:D (2.3) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001254 9jnp:D (2.3) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001255 9jnp:E (2.3) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001256 9jnp:E (2.3) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001257 9jnp:F (2.3) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001258 9jnp:F (2.3) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001259 9jnp:G (2.3) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001260 9jnp:G (2.3) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001261 9jnp:H (2.3) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001262 9jnp:H (2.3) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001263 9jnp:K (2.3) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001264 9jnp:K (2.3) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001265 9jnp:K (2.3) BS03 ATP N/A GO:0000182 ... P38144 40179160
    1001266 9jnq:A (1.6) BS01 NAD N/A GO:0016616 ... J9WTS5 N/A
    1001267 9jnq:B (1.6) BS01 NAD N/A GO:0016616 ... J9WTS5 N/A
    1001268 9jnr:A (2.44) BS01 NAD N/A GO:0016616 ... Q9RNB7 N/A
    1001269 9jnr:B (2.44) BS01 NAD N/A GO:0016616 ... Q9RNB7 N/A
    1001270 9jns:0 (4.7) BS01 rna N/A GO:0000027 ... P0A7N4 41296849
    1001271 9jns:2 (4.7) BS01 rna N/A GO:0002181 ... P0A7P5 41296849
    1001272 9jns:C (4.7) BS01 rna N/A GO:0000154 ... P13956 41296849
    1001273 9jns:D (4.7) BS01 rna N/A GO:0000027 ... P60438 41296849
    1001274 9jns:E (4.7) BS01 rna N/A GO:0001070 ... P60723 41296849
    1001275 9jns:J (4.7) BS01 rna N/A GO:0002181 ... P0AA10 41296849
    1001276 9jns:K (4.7) BS01 rna N/A GO:0002181 ... P0ADY3 41296849
    1001277 9jns:L (4.7) BS01 rna N/A GO:0002181 ... P02413 41296849
    1001278 9jns:N (4.7) BS01 rna N/A GO:0000027 ... P0AG44 41296849
    1001279 9jns:P (4.7) BS01 rna N/A GO:0000027 ... P0A7K6 41296849
    1001280 9jns:Q (4.7) BS01 rna N/A GO:0000027 ... P0A7L3 41296849
    1001281 9jns:R (4.7) BS01 rna N/A GO:0002181 ... P0AG48 41296849
    1001282 9jns:S (4.7) BS01 rna N/A GO:0002181 ... P61175 41296849
    1001283 9jns:T (4.7) BS01 rna N/A GO:0000027 ... P0ADZ0 41296849
    1001284 9jns:U (4.7) BS01 rna N/A GO:0000027 ... P60624 41296849
    1001285 9jns:Y (4.7) BS01 rna N/A GO:0000027 ... P0A7M6 41296849
    1001286 9jns:Z (4.7) BS01 rna N/A GO:0000027 ... P0AG51 41296849
    1001287 9jnt:A (2.7) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001288 9jnt:A (2.7) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001289 9jnt:B (2.7) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001290 9jnt:B (2.7) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001291 9jnt:C (2.7) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001292 9jnt:C (2.7) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001293 9jnt:D (2.7) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001294 9jnt:D (2.7) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001295 9jnt:E (2.7) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001296 9jnt:E (2.7) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001297 9jnt:F (2.7) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001298 9jnt:F (2.7) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001299 9jnt:G (2.7) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001300 9jnt:G (2.7) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001301 9jnt:H (2.7) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001302 9jnt:H (2.7) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001303 9jnt:K (2.7) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001304 9jnt:K (2.7) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001305 9jnt:K (2.7) BS03 ADP N/A GO:0000182 ... P38144 40179160
    1001306 9jnu:A (2.5) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001307 9jnu:A (2.5) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001308 9jnu:B (2.5) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001309 9jnu:B (2.5) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001310 9jnu:C (2.5) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001311 9jnu:C (2.5) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001312 9jnu:D (2.5) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001313 9jnu:D (2.5) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001314 9jnu:E (2.5) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001315 9jnu:E (2.5) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001316 9jnu:F (2.5) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001317 9jnu:F (2.5) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001318 9jnu:G (2.5) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001319 9jnu:G (2.5) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001320 9jnu:H (2.5) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001321 9jnu:H (2.5) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001322 9jnu:K (2.5) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001323 9jnu:K (2.5) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001324 9jnu:K (2.5) BS03 ADP N/A GO:0000182 ... P38144 40179160
    1001325 9jnv:A (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001326 9jnv:A (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001327 9jnv:B (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001328 9jnv:B (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001329 9jnv:C (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001330 9jnv:C (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001331 9jnv:D (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001332 9jnv:D (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001333 9jnv:E (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001334 9jnv:E (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001335 9jnv:F (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001336 9jnv:F (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001337 9jnv:G (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001338 9jnv:G (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001339 9jnv:H (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001340 9jnv:H (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001341 9jnv:K (3.0) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001342 9jnv:K (3.0) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001343 9jnv:K (3.0) BS03 ADP N/A GO:0000182 ... P38144 40179160
    1001344 9jnw:A (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001345 9jnw:A (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001346 9jnw:B (2.9) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001347 9jnw:B (2.9) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001348 9jnw:C (2.9) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001349 9jnw:C (2.9) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001350 9jnw:D (2.9) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001351 9jnw:D (2.9) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001352 9jnw:E (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001353 9jnw:E (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001354 9jnw:F (2.9) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001355 9jnw:F (2.9) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001356 9jnw:G (2.9) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001357 9jnw:G (2.9) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001358 9jnw:H (2.9) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001359 9jnw:H (2.9) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001360 9jnw:K (2.9) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001361 9jnw:K (2.9) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001362 9jnw:K (2.9) BS03 MG N/A GO:0000182 ... P38144 40179160
    1001363 9jnw:K (2.9) BS04 ADP N/A GO:0000182 ... P38144 40179160
    1001364 9jnx:A (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001365 9jnx:A (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001366 9jnx:B (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001367 9jnx:B (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001368 9jnx:C (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001369 9jnx:C (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001370 9jnx:D (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001371 9jnx:D (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001372 9jnx:E (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001373 9jnx:E (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001374 9jnx:F (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001375 9jnx:F (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001376 9jnx:G (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001377 9jnx:G (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001378 9jnx:H (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001379 9jnx:H (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001380 9jnx:K (3.0) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001381 9jnx:K (3.0) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001382 9jnx:K (3.0) BS03 ADP N/A GO:0000182 ... P38144 40179160
    1001383 9jnz:A (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001384 9jnz:A (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001385 9jnz:B (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001386 9jnz:B (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001387 9jnz:C (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001388 9jnz:C (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001389 9jnz:D (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001390 9jnz:D (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001391 9jnz:E (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001392 9jnz:E (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001393 9jnz:F (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001394 9jnz:F (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001395 9jnz:G (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001396 9jnz:G (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001397 9jnz:H (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001398 9jnz:H (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001399 9jnz:K (3.0) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001400 9jnz:K (3.0) BS02 dna N/A GO:0000182 ... P38144 40179160

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).