SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001401 9jo2:A (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001402 9jo2:A (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001403 9jo2:B (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001404 9jo2:B (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001405 9jo2:C (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001406 9jo2:C (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001407 9jo2:D (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001408 9jo2:D (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001409 9jo2:E (3.0) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001410 9jo2:E (3.0) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001411 9jo2:F (3.0) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001412 9jo2:F (3.0) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001413 9jo2:G (3.0) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001414 9jo2:G (3.0) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001415 9jo2:H (3.0) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001416 9jo2:H (3.0) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001417 9jo2:K (3.0) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001418 9jo2:K (3.0) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001419 9jo3:A (2.8) BS01 MG N/A GO:0001666 ... Q12791 39947888
    1001420 9jo3:A (2.8) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001421 9jo3:A (2.8) BS03 CA N/A GO:0001666 ... Q12791 39947888
    1001422 9jo3:A (2.8) BS04 A1L4E N/A GO:0001666 ... Q12791 39947888
    1001423 9jo3:A (2.8) BS05 Y01 N/A GO:0001666 ... Q12791 39947888
    1001424 9jo3:A (2.8) BS06 Y01 N/A GO:0001666 ... Q12791 39947888
    1001425 9jo3:B (2.8) BS01 MG N/A GO:0001666 ... Q12791 39947888
    1001426 9jo3:B (2.8) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001427 9jo3:B (2.8) BS03 CA N/A GO:0001666 ... Q12791 39947888
    1001428 9jo3:B (2.8) BS04 A1L4E N/A GO:0001666 ... Q12791 39947888
    1001429 9jo3:B (2.8) BS05 Y01 N/A GO:0001666 ... Q12791 39947888
    1001430 9jo3:B (2.8) BS06 Y01 N/A GO:0001666 ... Q12791 39947888
    1001431 9jo3:C (2.8) BS01 CA N/A GO:0001666 ... Q12791 39947888
    1001432 9jo3:C (2.8) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001433 9jo3:C (2.8) BS03 A1L4E N/A GO:0001666 ... Q12791 39947888
    1001434 9jo3:C (2.8) BS04 Y01 N/A GO:0001666 ... Q12791 39947888
    1001435 9jo3:C (2.8) BS05 Y01 N/A GO:0001666 ... Q12791 39947888
    1001436 9jo3:D (2.8) BS01 CA N/A GO:0001666 ... Q12791 39947888
    1001437 9jo3:D (2.8) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001438 9jo3:D (2.8) BS03 A1L4E N/A GO:0001666 ... Q12791 39947888
    1001439 9jo3:D (2.8) BS04 Y01 N/A GO:0001666 ... Q12791 39947888
    1001440 9jo4:A (3.4) BS01 A1L4F N/A GO:0001666 ... Q12791 39947888
    1001441 9jo4:A (3.4) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001442 9jo4:A (3.4) BS03 CA N/A GO:0001666 ... Q12791 39947888
    1001443 9jo4:A (3.4) BS04 Y01 N/A GO:0001666 ... Q12791 39947888
    1001444 9jo4:A (3.4) BS05 Y01 N/A GO:0001666 ... Q12791 39947888
    1001445 9jo4:B (3.4) BS01 A1L4F N/A GO:0001666 ... Q12791 39947888
    1001446 9jo4:B (3.4) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001447 9jo4:B (3.4) BS03 CA N/A GO:0001666 ... Q12791 39947888
    1001448 9jo4:B (3.4) BS04 Y01 N/A GO:0001666 ... Q12791 39947888
    1001449 9jo4:B (3.4) BS05 Y01 N/A GO:0001666 ... Q12791 39947888
    1001450 9jo4:B (3.4) BS06 Y01 N/A GO:0001666 ... Q12791 39947888
    1001451 9jo4:C (3.4) BS01 A1L4F N/A GO:0001666 ... Q12791 39947888
    1001452 9jo4:C (3.4) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001453 9jo4:C (3.4) BS03 CA N/A GO:0001666 ... Q12791 39947888
    1001454 9jo4:C (3.4) BS04 Y01 N/A GO:0001666 ... Q12791 39947888
    1001455 9jo4:C (3.4) BS05 Y01 N/A GO:0001666 ... Q12791 39947888
    1001456 9jo4:C (3.4) BS06 Y01 N/A GO:0001666 ... Q12791 39947888
    1001457 9jo4:D (3.4) BS01 A1L4F N/A GO:0001666 ... Q12791 39947888
    1001458 9jo4:D (3.4) BS02 CA N/A GO:0001666 ... Q12791 39947888
    1001459 9jo4:D (3.4) BS03 CA N/A GO:0001666 ... Q12791 39947888
    1001460 9jo4:D (3.4) BS04 Y01 N/A GO:0001666 ... Q12791 39947888
    1001461 9jo4:D (3.4) BS05 Y01 N/A GO:0001666 ... Q12791 39947888
    1001462 9jo5:A (2.8) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001463 9jo5:A (2.8) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001464 9jo5:B (2.8) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001465 9jo5:B (2.8) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001466 9jo5:C (2.8) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001467 9jo5:C (2.8) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001468 9jo5:D (2.8) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001469 9jo5:D (2.8) BS02 dna N/A GO:0000786 ... P02281 40179160
    1001470 9jo5:E (2.8) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001471 9jo5:E (2.8) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40179160
    1001472 9jo5:F (2.8) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001473 9jo5:F (2.8) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 40179160
    1001474 9jo5:G (2.8) BS01 dna N/A GO:0000786 ... P06897 40179160
    1001475 9jo5:G (2.8) BS02 dna N/A GO:0000786 ... P06897 40179160
    1001476 9jo5:H (2.8) BS01 dna N/A GO:0000786 ... P02281 40179160
    1001477 9jo5:K (2.8) BS01 dna N/A GO:0000182 ... P38144 40179160
    1001478 9jo5:K (2.8) BS02 dna N/A GO:0000182 ... P38144 40179160
    1001479 9jo5:K (2.8) BS03 MG N/A GO:0000182 ... P38144 40179160
    1001480 9jo5:K (2.8) BS04 ADP N/A GO:0000182 ... P38144 40179160
    1001481 9jo8:A (3.0) BS01 dna N/A N/A A0A7T8FYG6 40934924
    1001482 9jo8:D (3.0) BS01 dna N/A N/A P0DUH5 40934924
    1001483 9jo8:D (3.0) BS02 dna N/A N/A P0DUH5 40934924
    1001484 9jo8:D (3.0) BS03 ZN N/A N/A P0DUH5 40934924
    1001485 9joa:A (1.5) BS01 MN N/A GO:0008299 ... O96693 38647213
    1001486 9joa:A (1.5) BS02 UW0 N/A GO:0008299 ... O96693 38647213
    1001487 9joa:B (1.5) BS01 MN N/A GO:0008299 ... O96693 38647213
    1001488 9joa:B (1.5) BS02 UW0 N/A GO:0008299 ... O96693 38647213
    1001489 9joa:B (1.5) BS03 CA N/A GO:0008299 ... O96693 38647213
    1001490 9joa:B (1.5) BS04 CA N/A GO:0008299 ... O96693 38647213
    1001491 9job:A (1.39) BS01 NDP N/A GO:0008299 ... O96693 38647213
    1001492 9job:A (1.39) BS02 MN N/A GO:0008299 ... O96693 38647213
    1001493 9job:A (1.39) BS03 UW0 N/A GO:0008299 ... O96693 38647213
    1001494 9job:B (1.39) BS01 NDP N/A GO:0008299 ... O96693 38647213
    1001495 9job:B (1.39) BS02 MN N/A GO:0008299 ... O96693 38647213
    1001496 9job:B (1.39) BS03 UW0 N/A GO:0008299 ... O96693 38647213
    1001497 9job:B (1.39) BS04 CA N/A GO:0008299 ... O96693 38647213
    1001498 9job:B (1.39) BS05 CA N/A GO:0008299 ... O96693 38647213
    1001499 9jof:A (1.5) BS01 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001500 9jof:A (1.5) BS02 X2Y N/A N/A A0A1B1Y6G8 N/A
    1001501 9jof:A (1.5) BS03 FUC N/A N/A A0A1B1Y6G8 N/A
    1001502 9jof:B (1.5) BS01 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001503 9jof:B (1.5) BS02 X2Y N/A N/A A0A1B1Y6G8 N/A
    1001504 9jof:B (1.5) BS03 FUC N/A N/A A0A1B1Y6G8 N/A
    1001505 9jog:A (1.4) BS01 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001506 9jog:A (1.4) BS02 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001507 9jog:A (1.4) BS03 FUC N/A N/A A0A1B1Y6G8 N/A
    1001508 9jog:A (1.4) BS04 X2Y N/A N/A A0A1B1Y6G8 N/A
    1001509 9jog:B (1.4) BS01 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001510 9jog:B (1.4) BS02 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001511 9jog:B (1.4) BS03 FUC N/A N/A A0A1B1Y6G8 N/A
    1001512 9joh:A (1.36) BS01 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001513 9joh:A (1.36) BS02 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001514 9joh:A (1.36) BS03 X2Y N/A N/A A0A1B1Y6G8 N/A
    1001515 9joh:A (1.36) BS04 FUC N/A N/A A0A1B1Y6G8 N/A
    1001516 9joh:B (1.36) BS01 X6Y N/A N/A A0A1B1Y6G8 N/A
    1001517 9joh:B (1.36) BS02 X2Y N/A N/A A0A1B1Y6G8 N/A
    1001518 9joh:B (1.36) BS03 FUC N/A N/A A0A1B1Y6G8 N/A
    1001519 9joo:A (1.97) BS01 X6Y N/A N/A A0A1B1Y6K9 N/A
    1001520 9joo:A (1.97) BS02 X2Y N/A N/A A0A1B1Y6K9 N/A
    1001521 9joo:A (1.97) BS03 X6Y N/A N/A A0A1B1Y6K9 N/A
    1001522 9jop:H (2.17) BS01 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001523 9jop:H (2.17) BS02 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001524 9jop:I (2.17) BS01 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001525 9jop:I (2.17) BS02 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001526 9jop:J (2.17) BS01 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001527 9jop:J (2.17) BS02 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001528 9jop:K (2.17) BS01 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001529 9jop:K (2.17) BS02 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001530 9jop:L (2.17) BS01 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001531 9jop:L (2.17) BS02 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001532 9jop:M (2.17) BS01 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001533 9jop:M (2.17) BS02 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001534 9jop:N (2.17) BS01 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001535 9jop:N (2.17) BS02 A1EDS N/A GO:0004176 ... Q2G036 N/A
    1001536 9jor:A (3.09) BS01 dna N/A GO:0000166 ... P09176
    P23992
    N/A
    1001537 9jor:A (3.09) BS02 dna N/A GO:0000166 ... P09176
    P23992
    N/A
    1001538 9jor:A (3.09) BS03 MG N/A GO:0000166 ... P09176
    P23992
    N/A
    1001539 9jor:B (3.09) BS01 dna N/A GO:0000166 ... P09176
    P23992
    N/A
    1001540 9jor:B (3.09) BS02 dna N/A GO:0000166 ... P09176
    P23992
    N/A
    1001541 9jor:C (3.09) BS01 dna N/A GO:0000166 ... P07065 N/A
    1001542 9jor:C (3.09) BS02 dna N/A GO:0000166 ... P07065 N/A
    1001543 9jor:D (3.09) BS01 dna N/A GO:0000166 ... P07065 N/A
    1001544 9jor:D (3.09) BS02 dna N/A GO:0000166 ... P07065 N/A
    1001545 9jou:A (2.46) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001546 9jou:A (2.46) BS02 K3I N/A GO:0016020 ... W8VZ92 40908369
    1001547 9jou:B (2.46) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001548 9jou:B (2.46) BS02 K3I N/A GO:0016020 ... W8VZ92 40908369
    1001549 9jou:C (2.46) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001550 9jou:C (2.46) BS02 K3I N/A GO:0016020 ... W8VZ92 40908369
    1001551 9jou:D (2.46) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001552 9jou:D (2.46) BS02 K3I N/A GO:0016020 ... W8VZ92 40908369
    1001553 9jou:E (2.46) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001554 9jou:E (2.46) BS02 K3I N/A GO:0016020 ... W8VZ92 40908369
    1001555 9jov:A (2.27) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001556 9jov:A (2.27) BS02 A1L4O N/A GO:0016020 ... W8VZ92 40908369
    1001557 9jov:B (2.27) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001558 9jov:B (2.27) BS02 A1L4O N/A GO:0016020 ... W8VZ92 40908369
    1001559 9jov:C (2.27) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001560 9jov:C (2.27) BS02 A1L4O N/A GO:0016020 ... W8VZ92 40908369
    1001561 9jov:D (2.27) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001562 9jov:D (2.27) BS02 A1L4O N/A GO:0016020 ... W8VZ92 40908369
    1001563 9jov:E (2.27) BS01 RET N/A GO:0016020 ... W8VZ92 40908369
    1001564 9jov:E (2.27) BS02 A1L4O N/A GO:0016020 ... W8VZ92 40908369
    1001565 9jow:A (2.48) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001566 9jow:A (2.48) BS02 A1L4O N/A GO:0016020 ... W8VZW3 40908369
    1001567 9jow:A (2.48) BS03 CL N/A GO:0016020 ... W8VZW3 40908369
    1001568 9jow:A (2.48) BS04 8K6 N/A GO:0016020 ... W8VZW3 40908369
    1001569 9jow:B (2.48) BS01 8K6 N/A GO:0016020 ... W8VZW3 40908369
    1001570 9jow:B (2.48) BS02 RET N/A GO:0016020 ... W8VZW3 40908369
    1001571 9jow:B (2.48) BS03 A1L4O N/A GO:0016020 ... W8VZW3 40908369
    1001572 9jow:B (2.48) BS04 CL N/A GO:0016020 ... W8VZW3 40908369
    1001573 9jow:C (2.48) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001574 9jow:C (2.48) BS02 A1L4O N/A GO:0016020 ... W8VZW3 40908369
    1001575 9jow:C (2.48) BS03 CL N/A GO:0016020 ... W8VZW3 40908369
    1001576 9jow:D (2.48) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001577 9jow:D (2.48) BS02 A1L4O N/A GO:0016020 ... W8VZW3 40908369
    1001578 9jow:D (2.48) BS03 CL N/A GO:0016020 ... W8VZW3 40908369
    1001579 9jow:E (2.48) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001580 9jow:E (2.48) BS02 A1L4O N/A GO:0016020 ... W8VZW3 40908369
    1001581 9jow:E (2.48) BS03 CL N/A GO:0016020 ... W8VZW3 40908369
    1001582 9jox:A (2.5) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001583 9jox:B (2.5) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001584 9jox:C (2.5) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001585 9jox:C (2.5) BS02 CL N/A GO:0016020 ... W8VZW3 40908369
    1001586 9jox:D (2.5) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001587 9jox:D (2.5) BS02 CL N/A GO:0016020 ... W8VZW3 40908369
    1001588 9jox:E (2.5) BS01 RET N/A GO:0016020 ... W8VZW3 40908369
    1001589 9jp2:A (2.02) BS01 X6Y N/A N/A A0A5C6D8T6 N/A
    1001590 9jp3:A (1.4) BS01 X6Y N/A N/A A0A5C6D8T6 N/A
    1001591 9jp3:A (1.4) BS02 X2Y N/A N/A A0A5C6D8T6 N/A
    1001592 9jp3:A (1.4) BS03 FUC N/A N/A A0A5C6D8T6 N/A
    1001593 9jp5:A (2.88) BS01 FES N/A GO:0004497 ... Q0RWD5 N/A
    1001594 9jp5:A (2.88) BS02 FE2 N/A GO:0004497 ... Q0RWD5 N/A
    1001595 9jp5:C (2.88) BS01 FES N/A GO:0004497 ... Q0RWD5 N/A
    1001596 9jp5:C (2.88) BS02 FE2 N/A GO:0004497 ... Q0RWD5 N/A
    1001597 9jp5:E (2.88) BS01 FES N/A GO:0004497 ... Q0RWD5 N/A
    1001598 9jp5:E (2.88) BS02 FE2 N/A GO:0004497 ... Q0RWD5 N/A
    1001599 9jp5:G (2.88) BS01 FES N/A GO:0004497 ... Q0RWD5 N/A
    1001600 9jp5:G (2.88) BS02 FE2 N/A GO:0004497 ... Q0RWD5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).