SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1002001 9jpp:u (2.26) BS01 rna N/A N/A P68919 N/A
    1002002 9jpp:v (2.26) BS01 rna N/A N/A P0A7L8 N/A
    1002003 9jpp:v (2.26) BS02 rna N/A N/A P0A7L8 N/A
    1002004 9jpp:w (2.26) BS01 rna N/A N/A P0A7M2 N/A
    1002005 9jpp:x (2.26) BS01 rna N/A N/A P0A7M6 N/A
    1002006 9jpp:y (2.26) BS01 rna N/A N/A P0AG51 N/A
    1002007 9jpp:z (2.26) BS01 rna N/A N/A P0A7N4 N/A
    1002008 9jpu:A (3.25) BS01 dna N/A GO:0002250 ... P15919 40729386
    1002009 9jpu:A (3.25) BS02 dna N/A GO:0002250 ... P15919 40729386
    1002010 9jpu:A (3.25) BS03 dna N/A GO:0002250 ... P15919 40729386
    1002011 9jpu:A (3.25) BS04 dna N/A GO:0002250 ... P15919 40729386
    1002012 9jpu:A (3.25) BS05 CA N/A GO:0002250 ... P15919 40729386
    1002013 9jpu:A (3.25) BS06 ZN N/A GO:0002250 ... P15919 40729386
    1002014 9jpu:C (3.25) BS01 dna N/A GO:0002250 ... P15919 40729386
    1002015 9jpu:C (3.25) BS02 dna N/A GO:0002250 ... P15919 40729386
    1002016 9jpu:C (3.25) BS03 dna N/A GO:0002250 ... P15919 40729386
    1002017 9jpu:C (3.25) BS04 dna N/A GO:0002250 ... P15919 40729386
    1002018 9jpu:C (3.25) BS05 CA N/A GO:0002250 ... P15919 40729386
    1002019 9jpu:C (3.25) BS06 ZN N/A GO:0002250 ... P15919 40729386
    1002020 9jpu:E (3.25) BS01 ZN N/A GO:0002313 ... P21784 40729386
    1002021 9jpu:E (3.25) BS02 ZN N/A GO:0002313 ... P21784 40729386
    1002022 9jpx:A (2.95) BS01 dna N/A GO:0002250 ... P15919 40729386
    1002023 9jpx:A (2.95) BS02 dna N/A GO:0002250 ... P15919 40729386
    1002024 9jpx:A (2.95) BS03 dna N/A GO:0002250 ... P15919 40729386
    1002025 9jpx:A (2.95) BS04 dna N/A GO:0002250 ... P15919 40729386
    1002026 9jpx:A (2.95) BS05 CA N/A GO:0002250 ... P15919 40729386
    1002027 9jpx:A (2.95) BS06 ZN N/A GO:0002250 ... P15919 40729386
    1002028 9jpx:C (2.95) BS01 dna N/A GO:0002250 ... P15919 40729386
    1002029 9jpx:C (2.95) BS02 dna N/A GO:0002250 ... P15919 40729386
    1002030 9jpx:C (2.95) BS03 dna N/A GO:0002250 ... P15919 40729386
    1002031 9jpx:C (2.95) BS04 dna N/A GO:0002250 ... P15919 40729386
    1002032 9jpx:C (2.95) BS05 CA N/A GO:0002250 ... P15919 40729386
    1002033 9jpx:C (2.95) BS06 ZN N/A GO:0002250 ... P15919 40729386
    1002034 9jq0:A (1.93) BS01 PO4 N/A GO:0003993 ... B5XS64 40081774
    1002035 9jq0:A (1.93) BS02 PO4 N/A GO:0003993 ... B5XS64 40081774
    1002036 9jq0:A (1.93) BS03 PO4 N/A GO:0003993 ... B5XS64 40081774
    1002037 9jq0:A (1.93) BS04 PO4 N/A GO:0003993 ... B5XS64 40081774
    1002038 9jq0:A (1.93) BS05 PO4 N/A GO:0003993 ... B5XS64 40081774
    1002039 9jq0:A (1.93) BS06 PO4 N/A GO:0003993 ... B5XS64 40081774
    1002040 9jq1:A (3.02) BS01 A1ECU N/A GO:0004672 ... P00533 N/A
    1002041 9jq2:0 (2.61) BS01 rna N/A N/A P0A7N9 N/A
    1002042 9jq2:1 (2.61) BS01 rna N/A N/A P0A7P5 N/A
    1002043 9jq2:2 (2.61) BS01 rna N/A N/A P0A7Q1 N/A
    1002044 9jq2:3 (2.61) BS01 rna N/A N/A P0A7Q6 N/A
    1002045 9jq2:3 (2.61) BS02 ZN N/A N/A P0A7Q6 N/A
    1002046 9jq2:4 (2.61) BS01 rna N/A N/A P0A7M9 N/A
    1002047 9jq2:4 (2.61) BS02 ZN N/A N/A P0A7M9 N/A
    1002048 9jq2:B (2.61) BS01 rna N/A N/A P0A7V0 N/A
    1002049 9jq2:C (2.61) BS01 rna N/A N/A P0A7V3 N/A
    1002050 9jq2:D (2.61) BS01 rna N/A N/A P0A7V8 N/A
    1002051 9jq2:E (2.61) BS01 rna N/A N/A P0A7W1 N/A
    1002052 9jq2:F (2.61) BS01 rna N/A N/A P02358 N/A
    1002053 9jq2:G (2.61) BS01 rna N/A N/A P02359 N/A
    1002054 9jq2:G (2.61) BS02 rna N/A N/A P02359 N/A
    1002055 9jq2:H (2.61) BS01 rna N/A N/A P0A7W7 N/A
    1002056 9jq2:I (2.61) BS01 rna N/A N/A P0A7X3 N/A
    1002057 9jq2:I (2.61) BS02 rna N/A N/A P0A7X3 N/A
    1002058 9jq2:J (2.61) BS01 rna N/A N/A P0A7R5 N/A
    1002059 9jq2:K (2.61) BS01 rna N/A N/A P0A7R9 N/A
    1002060 9jq2:L (2.61) BS01 rna N/A N/A P0A7S3 N/A
    1002061 9jq2:L (2.61) BS02 rna N/A N/A P0A7S3 N/A
    1002062 9jq2:M (2.61) BS01 rna N/A N/A P0A7S9 N/A
    1002063 9jq2:M (2.61) BS02 rna N/A N/A P0A7S9 N/A
    1002064 9jq2:N (2.61) BS01 rna N/A N/A P0AG59 N/A
    1002065 9jq2:O (2.61) BS01 rna N/A N/A P0ADZ4 N/A
    1002066 9jq2:O (2.61) BS02 rna N/A N/A P0ADZ4 N/A
    1002067 9jq2:P (2.61) BS01 rna N/A N/A P0A7T3 N/A
    1002068 9jq2:Q (2.61) BS01 rna N/A N/A P0AG63 N/A
    1002069 9jq2:R (2.61) BS01 rna N/A N/A P0A7T7 N/A
    1002070 9jq2:S (2.61) BS01 rna N/A N/A P0A7U3 N/A
    1002071 9jq2:T (2.61) BS01 rna N/A N/A P0A7U7 N/A
    1002072 9jq2:U (2.61) BS01 rna N/A N/A P68679 N/A
    1002073 9jq2:c (2.61) BS01 rna N/A N/A P60422 N/A
    1002074 9jq2:d (2.61) BS01 rna N/A N/A P60438 N/A
    1002075 9jq2:e (2.61) BS01 rna N/A N/A P60723 N/A
    1002076 9jq2:f (2.61) BS01 rna N/A N/A P62399 N/A
    1002077 9jq2:f (2.61) BS02 rna N/A N/A P62399 N/A
    1002078 9jq2:f (2.61) BS03 rna N/A N/A P62399 N/A
    1002079 9jq2:g (2.61) BS01 rna N/A N/A P0AG55 N/A
    1002080 9jq2:h (2.61) BS01 rna N/A N/A P0A7R1 N/A
    1002081 9jq2:i (2.61) BS01 rna N/A N/A P0AA10 N/A
    1002082 9jq2:j (2.61) BS01 rna N/A N/A P0ADY3 N/A
    1002083 9jq2:j (2.61) BS02 rna N/A N/A P0ADY3 N/A
    1002084 9jq2:k (2.61) BS01 rna N/A N/A P02413 N/A
    1002085 9jq2:l (2.61) BS01 rna N/A N/A P0ADY7 N/A
    1002086 9jq2:l (2.61) BS02 rna N/A N/A P0ADY7 N/A
    1002087 9jq2:l (2.61) BS03 rna N/A N/A P0ADY7 N/A
    1002088 9jq2:m (2.61) BS01 rna N/A N/A P0AG44 N/A
    1002089 9jq2:n (2.61) BS01 rna N/A N/A P0C018 N/A
    1002090 9jq2:n (2.61) BS02 rna N/A N/A P0C018 N/A
    1002091 9jq2:o (2.61) BS01 rna N/A N/A P0A7K6 N/A
    1002092 9jq2:o (2.61) BS02 rna N/A N/A P0A7K6 N/A
    1002093 9jq2:p (2.61) BS01 rna N/A N/A P0A7L3 N/A
    1002094 9jq2:q (2.61) BS01 rna N/A N/A P0AG48 N/A
    1002095 9jq2:r (2.61) BS01 rna N/A N/A P61175 N/A
    1002096 9jq2:s (2.61) BS01 rna N/A N/A P0ADZ0 N/A
    1002097 9jq2:t (2.61) BS01 rna N/A N/A P60624 N/A
    1002098 9jq2:u (2.61) BS01 rna N/A N/A P68919 N/A
    1002099 9jq2:v (2.61) BS01 rna N/A N/A P0A7L8 N/A
    1002100 9jq2:v (2.61) BS02 rna N/A N/A P0A7L8 N/A
    1002101 9jq2:w (2.61) BS01 rna N/A N/A P0A7M2 N/A
    1002102 9jq2:x (2.61) BS01 rna N/A N/A P0A7M6 N/A
    1002103 9jq2:y (2.61) BS01 rna N/A N/A P0AG51 N/A
    1002104 9jq2:z (2.61) BS01 rna N/A N/A P0A7N4 N/A
    1002105 9jq3:A (2.45) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002106 9jq3:A (2.45) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002107 9jq3:B (2.45) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002108 9jq3:B (2.45) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002109 9jq3:C (2.45) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002110 9jq3:C (2.45) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002111 9jq3:D (2.45) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002112 9jq3:D (2.45) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002113 9jq4:A (2.91) BS01 BCO N/A GO:0003995 ... P26440 40851894
    1002114 9jq4:A (2.91) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002115 9jq4:A (2.91) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002116 9jq4:B (2.91) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002117 9jq4:B (2.91) BS02 BCO N/A GO:0003995 ... P26440 40851894
    1002118 9jq4:B (2.91) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002119 9jq4:C (2.91) BS01 BCO N/A GO:0003995 ... P26440 40851894
    1002120 9jq4:C (2.91) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002121 9jq4:C (2.91) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002122 9jq4:D (2.91) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002123 9jq4:D (2.91) BS02 BCO N/A GO:0003995 ... P26440 40851894
    1002124 9jq4:D (2.91) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002125 9jq5:A (3.35) BS01 IVC N/A GO:0003995 ... P26440 40851894
    1002126 9jq5:A (3.35) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002127 9jq5:A (3.35) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002128 9jq5:B (3.35) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002129 9jq5:B (3.35) BS02 IVC N/A GO:0003995 ... P26440 40851894
    1002130 9jq5:B (3.35) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002131 9jq5:C (3.35) BS01 IVC N/A GO:0003995 ... P26440 40851894
    1002132 9jq5:C (3.35) BS02 FAD N/A GO:0003995 ... P26440 40851894
    1002133 9jq5:C (3.35) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002134 9jq5:D (3.35) BS01 FAD N/A GO:0003995 ... P26440 40851894
    1002135 9jq5:D (3.35) BS02 IVC N/A GO:0003995 ... P26440 40851894
    1002136 9jq5:D (3.35) BS03 FAD N/A GO:0003995 ... P26440 40851894
    1002137 9jqa:A (2.15) BS01 FAD N/A GO:0005886 ... M1VMF7 N/A
    1002138 9jqa:A (2.15) BS02 F3S N/A GO:0005886 ... M1VMF7 N/A
    1002139 9jqa:C (2.15) BS01 HEC N/A GO:0009055 ... M1V1V5 N/A
    1002140 9jqa:C (2.15) BS02 HEC N/A GO:0009055 ... M1V1V5 N/A
    1002141 9jqc:A (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002142 9jqc:B (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002143 9jqc:C (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002144 9jqc:D (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002145 9jqc:E (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002146 9jqc:F (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002147 9jqc:G (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002148 9jqc:H (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002149 9jqc:I (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002150 9jqc:J (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002151 9jqc:K (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002152 9jqc:L (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002153 9jqc:M (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002154 9jqc:N (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002155 9jqc:O (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002156 9jqc:P (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002157 9jqc:Q (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002158 9jqc:R (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002159 9jqc:S (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002160 9jqc:T (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002161 9jqc:U (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002162 9jqc:V (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002163 9jqc:W (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002164 9jqc:X (1.73) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002165 9jqd:A (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002166 9jqd:A (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002167 9jqd:A (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002168 9jqd:B (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002169 9jqd:B (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002170 9jqd:B (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002171 9jqd:C (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002172 9jqd:C (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002173 9jqd:C (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002174 9jqd:D (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002175 9jqd:D (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002176 9jqd:D (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002177 9jqd:E (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002178 9jqd:E (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002179 9jqd:E (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002180 9jqd:F (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002181 9jqd:F (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002182 9jqd:F (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002183 9jqd:G (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002184 9jqd:G (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002185 9jqd:G (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002186 9jqd:H (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002187 9jqd:H (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002188 9jqd:H (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002189 9jqd:I (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002190 9jqd:I (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002191 9jqd:I (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002192 9jqd:J (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002193 9jqd:J (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002194 9jqd:J (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002195 9jqd:K (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002196 9jqd:K (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002197 9jqd:K (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002198 9jqd:L (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002199 9jqd:L (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002200 9jqd:L (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).