SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1002201 9jqd:M (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002202 9jqd:M (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002203 9jqd:M (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002204 9jqd:N (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002205 9jqd:N (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002206 9jqd:N (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002207 9jqd:O (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002208 9jqd:O (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002209 9jqd:O (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002210 9jqd:P (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002211 9jqd:P (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002212 9jqd:P (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002213 9jqd:Q (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002214 9jqd:Q (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002215 9jqd:Q (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002216 9jqd:R (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002217 9jqd:R (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002218 9jqd:R (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002219 9jqd:S (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002220 9jqd:S (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002221 9jqd:S (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002222 9jqd:T (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002223 9jqd:T (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002224 9jqd:T (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002225 9jqd:U (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002226 9jqd:U (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002227 9jqd:U (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002228 9jqd:V (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002229 9jqd:V (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002230 9jqd:V (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002231 9jqd:W (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002232 9jqd:W (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002233 9jqd:W (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002234 9jqd:X (1.81) BS01 FE N/A GO:0004322 ... P02794 39499210
    1002235 9jqd:X (1.81) BS02 FE N/A GO:0004322 ... P02794 39499210
    1002236 9jqd:X (1.81) BS03 FE N/A GO:0004322 ... P02794 39499210
    1002237 9jqe:A (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002238 9jqe:A (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002239 9jqe:B (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002240 9jqe:B (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002241 9jqe:C (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002242 9jqe:C (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002243 9jqe:D (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002244 9jqe:D (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002245 9jqe:E (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002246 9jqe:E (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002247 9jqe:F (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002248 9jqe:F (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002249 9jqe:G (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002250 9jqe:G (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002251 9jqe:H (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002252 9jqe:H (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002253 9jqe:I (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002254 9jqe:I (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002255 9jqe:J (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002256 9jqe:J (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002257 9jqe:K (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002258 9jqe:K (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002259 9jqe:L (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002260 9jqe:L (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002261 9jqe:M (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002262 9jqe:M (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002263 9jqe:N (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002264 9jqe:N (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002265 9jqe:O (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002266 9jqe:O (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002267 9jqe:P (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002268 9jqe:P (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002269 9jqe:Q (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002270 9jqe:Q (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002271 9jqe:R (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002272 9jqe:R (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002273 9jqe:S (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002274 9jqe:S (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002275 9jqe:T (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002276 9jqe:T (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002277 9jqe:U (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002278 9jqe:U (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002279 9jqe:V (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002280 9jqe:V (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002281 9jqe:W (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002282 9jqe:W (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002283 9jqe:X (1.83) BS01 CU N/A GO:0004322 ... P02794 39499210
    1002284 9jqe:X (1.83) BS02 CU N/A GO:0004322 ... P02794 39499210
    1002285 9jqg:A (1.5) BS01 A1EBP N/A N/A Q10QA5 40267905
    1002286 9jqg:A (1.5) BS02 PDO N/A N/A Q10QA5 40267905
    1002287 9jqi:A (2.1) BS01 CA N/A GO:0000922 ... P0DP23 N/A
    1002288 9jqi:A (2.1) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1002289 9jqi:A (2.1) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1002290 9jqi:A (2.1) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1002291 9jqi:A (2.1) BS05 KN9 N/A GO:0000922 ... P0DP23 N/A
    1002292 9jqi:B (2.1) BS01 CA N/A GO:0000922 ... P0DP23 N/A
    1002293 9jqi:B (2.1) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1002294 9jqi:B (2.1) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1002295 9jqi:B (2.1) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1002296 9jqi:B (2.1) BS05 KN9 N/A GO:0000922 ... P0DP23 N/A
    1002297 9jqi:C (2.1) BS01 CA N/A GO:0000922 ... P0DP23 N/A
    1002298 9jqi:C (2.1) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1002299 9jqi:C (2.1) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1002300 9jqi:C (2.1) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1002301 9jqi:C (2.1) BS05 KN9 N/A GO:0000922 ... P0DP23 N/A
    1002302 9jqk:D (2.29) BS01 A1ECX N/A GO:0003723 ... Q77DJ5 39716669
    1002303 9jqk:D (2.29) BS02 A1ECX N/A GO:0003723 ... Q77DJ5 39716669
    1002304 9jqm:A (2.44) BS01 HEM N/A GO:0004497 ... A0A1M7CBV6 40543591
    1002305 9jqm:A (2.44) BS02 DCR N/A GO:0004497 ... A0A1M7CBV6 40543591
    1002306 9jqm:B (2.44) BS01 HEM N/A GO:0004497 ... A0A1M7CBV6 40543591
    1002307 9jqm:B (2.44) BS02 DCR N/A GO:0004497 ... A0A1M7CBV6 40543591
    1002308 9jqn:A (3.03) BS01 dna N/A GO:0002250 ... P15919 40729386
    1002309 9jqn:A (3.03) BS02 dna N/A GO:0002250 ... P15919 40729386
    1002310 9jqn:A (3.03) BS03 dna N/A GO:0002250 ... P15919 40729386
    1002311 9jqn:A (3.03) BS04 dna N/A GO:0002250 ... P15919 40729386
    1002312 9jqn:A (3.03) BS05 dna N/A GO:0002250 ... P15919 40729386
    1002313 9jqn:A (3.03) BS06 dna N/A GO:0002250 ... P15919 40729386
    1002314 9jqn:A (3.03) BS07 ZN N/A GO:0002250 ... P15919 40729386
    1002315 9jqn:B (3.03) BS01 dna N/A GO:0002313 ... P21784 40729386
    1002316 9jqn:C (3.03) BS01 dna N/A GO:0002250 ... P15919 40729386
    1002317 9jqn:C (3.03) BS02 dna N/A GO:0002250 ... P15919 40729386
    1002318 9jqn:C (3.03) BS03 dna N/A GO:0002250 ... P15919 40729386
    1002319 9jqn:C (3.03) BS04 dna N/A GO:0002250 ... P15919 40729386
    1002320 9jqn:C (3.03) BS05 dna N/A GO:0002250 ... P15919 40729386
    1002321 9jqn:C (3.03) BS06 dna N/A GO:0002250 ... P15919 40729386
    1002322 9jqn:C (3.03) BS07 CA N/A GO:0002250 ... P15919 40729386
    1002323 9jqn:C (3.03) BS08 ZN N/A GO:0002250 ... P15919 40729386
    1002324 9jqn:D (3.03) BS01 dna N/A GO:0002313 ... P21784 40729386
    1002325 9jqq:A (3.26) BS01 H6P N/A GO:0001817 ... O00481 40505658
    1002326 9jqq:E (3.26) BS01 H6P N/A GO:0001817 ... Q7KYR7 40505658
    1002327 9jqr:A (3.0) BS01 H6P N/A GO:0001817 ... O00481 40505658
    1002328 9jqx:A (3.61) BS01 2BV N/A GO:0004930 ... Q9BML7 N/A
    1002329 9jqy:A (2.92) BS01 A1EC5 N/A GO:0004930 ... P35408 41162752
    1002330 9jqz:A (2.65) BS01 A1ECR N/A GO:0004930 ... P35408 41162752
    1002331 9jr0:A (3.06) BS01 ABU N/A GO:0004930 ... Q9BML7 N/A
    1002332 9jr1:B (3.4) BS01 peptide N/A GO:0004175 ... B5Z8Z7 N/A
    1002333 9jr1:B (3.4) BS02 peptide N/A GO:0004175 ... B5Z8Z7 N/A
    1002334 9jr1:B (3.4) BS03 peptide N/A GO:0004175 ... B5Z8Z7 N/A
    1002335 9jr1:D (3.4) BS01 peptide N/A GO:0004175 ... B5Z8Z7 N/A
    1002336 9jr1:D (3.4) BS02 peptide N/A GO:0004175 ... B5Z8Z7 N/A
    1002337 9jr1:D (3.4) BS03 peptide N/A GO:0004175 ... B5Z8Z7 N/A
    1002338 9jr4:B (2.76) BS01 ZN N/A GO:0006508 ... A0A8D2KIZ1 40713966
    1002339 9jr6:A (1.894) BS01 A1L38 N/A N/A Q0INZ4 N/A
    1002340 9jr6:B (1.894) BS01 A1L38 N/A N/A Q0INZ4 N/A
    1002341 9jr9:A (2.84) BS01 ZN N/A GO:0004521 ... P0C7P3 40642785
    1002342 9jr9:B (2.84) BS01 ZN N/A GO:0004521 ... P0C7P3 40642785
    1002343 9jrc:B (3.16) BS01 ZN N/A GO:0006508 ... A0A8D2KIZ1 40713966
    1002344 9jri:A (3.43) BS01 C2F N/A GO:0005506 ... P41440 40175380
    1002345 9jrk:A (3.44) BS01 MTX N/A GO:0005506 ... P41440 40175380
    1002346 9jrl:A (3.25) BS01 COP N/A GO:0005506 ... P41440 40175380
    1002347 9jrm:A (3.34) BS01 GJF N/A GO:0005506 ... P41440 40175380
    1002348 9jrn:A (3.74) BS01 TPP N/A GO:0005506 ... P41440 40175380
    1002349 9jro:A (3.5) BS01 A1ECS N/A GO:0004930 ... P0ABE7
    P43116
    41162752
    1002350 9jrp:A (1.49) BS01 A1EC7 N/A GO:0001523 ... P42330 N/A
    1002351 9jrp:A (1.49) BS02 NAP N/A GO:0001523 ... P42330 N/A
    1002352 9jrp:B (1.49) BS01 A1EC7 N/A GO:0001523 ... P42330 N/A
    1002353 9jrp:B (1.49) BS02 NAP N/A GO:0001523 ... P42330 N/A
    1002354 9jrr:A (1.76) BS01 ZN N/A GO:0005829 ... A0A0H3NJ20 40525813
    1002355 9jrr:B (1.76) BS01 ZN N/A GO:0005829 ... A0A0H3NJ20 40525813
    1002356 9jrt:A (3.28) BS01 A1EC5 N/A GO:0004930 ... P0ABE7
    P43116
    41162752
    1002357 9jru:A (1.67) BS01 NAP N/A GO:0001523 ... P42330 N/A
    1002358 9jru:A (1.67) BS02 A1ECZ N/A GO:0001523 ... P42330 N/A
    1002359 9jru:B (1.67) BS01 NAP N/A GO:0001523 ... P42330 N/A
    1002360 9jru:B (1.67) BS02 A1ECZ N/A GO:0001523 ... P42330 N/A
    1002361 9jry:A (3.35) BS01 BLR N/A GO:0006355 ... Q9R6X3 39801362
    1002362 9jry:B (3.35) BS01 BLR N/A GO:0006355 ... Q9R6X3 39801362
    1002363 9jrz:A (1.69) BS01 MTA N/A GO:0003824 ... Q9YAQ8 N/A
    1002364 9js2:A (1.94) BS01 A1L4S N/A GO:0003868 ... P93836 N/A
    1002365 9js2:A (1.94) BS02 CO N/A GO:0003868 ... P93836 N/A
    1002366 9js9:B (1.89) BS01 HEM N/A GO:0004497 ... Q5YNS8 N/A
    1002367 9js9:B (1.89) BS02 TES N/A GO:0004497 ... Q5YNS8 N/A
    1002368 9jsb:A (2.93) BS01 rna N/A GO:0003676 ... A0A1L3JCL0 40122999
    1002369 9jsb:B (2.93) BS01 rna N/A GO:0003676 ... A0A1L3JCL0 40122999
    1002370 9jse:A (1.25) BS01 KJK N/A GO:0008800 ... H7C785 40938351
    1002371 9jsf:A (3.04) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002372 9jsf:A (3.04) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002373 9jsf:A (3.04) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002374 9jsg:A (2.47) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002375 9jsg:A (2.47) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002376 9jsg:A (2.47) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002377 9jsh:A (3.32) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002378 9jsh:A (3.32) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002379 9jsh:A (3.32) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002380 9jsh:B (3.32) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002381 9jsh:B (3.32) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002382 9jsh:B (3.32) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002383 9jsh:C (3.32) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002384 9jsh:C (3.32) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002385 9jsh:C (3.32) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002386 9jsh:D (3.32) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002387 9jsh:D (3.32) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002388 9jsh:D (3.32) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002389 9jsh:E (3.32) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002390 9jsh:E (3.32) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002391 9jsh:E (3.32) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002392 9jsh:F (3.32) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002393 9jsh:F (3.32) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002394 9jsh:F (3.32) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002395 9jsh:G (3.32) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002396 9jsh:G (3.32) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002397 9jsh:G (3.32) BS03 CA N/A GO:0005576 ... Q46221 N/A
    1002398 9jsi:A (3.35) BS01 CA N/A GO:0005576 ... Q46221 N/A
    1002399 9jsi:A (3.35) BS02 CA N/A GO:0005576 ... Q46221 N/A
    1002400 9jsi:A (3.35) BS03 CA N/A GO:0005576 ... Q46221 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).