SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1003801 9k0z:s (4.7) BS01 rna N/A GO:0003735 ... A0QSG8 40569974
    1003802 9k0z:t (4.7) BS01 rna N/A GO:0003735 ... A0QSD8 40569974
    1003803 9k0z:u (4.7) BS01 rna N/A GO:0003735 ... A0QSL9 40569974
    1003804 9k0z:v (4.7) BS01 rna N/A GO:0003735 ... A0QSG5 40569974
    1003805 9k0z:v (4.7) BS02 rna N/A GO:0003735 ... A0QSG5 40569974
    1003806 9k0z:w (4.7) BS01 rna N/A GO:0003735 ... A0QV42 40569974
    1003807 9k0z:w (4.7) BS02 rna N/A GO:0003735 ... A0QV42 40569974
    1003808 9k0z:x (4.7) BS01 rna N/A GO:0000027 ... A0QYU6 40569974
    1003809 9k0z:y (4.7) BS01 rna N/A GO:0003723 ... A0R151 40569974
    1003810 9k0z:z (4.7) BS01 rna N/A GO:0003735 ... A0QSD6 40569974
    1003811 9k10:5 (3.6) BS01 rna N/A GO:0003746 ... A0R6G0 40569974
    1003812 9k10:5 (3.6) BS02 GNP N/A GO:0003746 ... A0R6G0 40569974
    1003813 9k10:6 (3.6) BS01 rna N/A GO:0003746 ... A0R6G0 40569974
    1003814 9k10:6 (3.6) BS02 GNP N/A GO:0003746 ... A0R6G0 40569974
    1003815 9k10:C (3.6) BS01 rna N/A GO:0002181 ... A0QSD4 40569974
    1003816 9k10:C (3.6) BS02 MG N/A GO:0002181 ... A0QSD4 40569974
    1003817 9k10:C (3.6) BS03 MG N/A GO:0002181 ... A0QSD4 40569974
    1003818 9k10:D (3.6) BS01 rna N/A GO:0003735 ... A0QSD1 40569974
    1003819 9k10:E (3.6) BS01 rna N/A GO:0003735 ... A0QSD2 40569974
    1003820 9k10:F (3.6) BS01 rna N/A GO:0000049 ... A0QSG1 40569974
    1003821 9k10:F (3.6) BS02 rna N/A GO:0000049 ... A0QSG1 40569974
    1003822 9k10:F (3.6) BS03 MG N/A GO:0000049 ... A0QSG1 40569974
    1003823 9k10:G (3.6) BS01 rna N/A GO:0002181 ... A0QSG4 40569974
    1003824 9k10:H (3.6) BS01 rna N/A GO:0003735 ... A0R7F6 40569974
    1003825 9k10:I (3.6) BS01 rna N/A GO:0003735 ... A0QS62 40569974
    1003826 9k10:J (3.6) BS01 rna N/A GO:0003735 ... A0QS45 40569974
    1003827 9k10:K (3.6) BS01 rna N/A GO:0003729 ... A0QSP8 40569974
    1003828 9k10:L (3.6) BS01 rna N/A GO:0003735 ... A0QSF9 40569974
    1003829 9k10:M (3.6) BS01 rna N/A GO:0003735 ... A0QSG8 40569974
    1003830 9k10:N (3.6) BS01 rna N/A GO:0003735 ... A0QSD8 40569974
    1003831 9k10:O (3.6) BS01 rna N/A GO:0003735 ... A0QSL9 40569974
    1003832 9k10:P (3.6) BS01 rna N/A GO:0003735 ... A0QSG5 40569974
    1003833 9k10:P (3.6) BS02 rna N/A GO:0003735 ... A0QSG5 40569974
    1003834 9k10:Q (3.6) BS01 rna N/A GO:0003735 ... A0QV42 40569974
    1003835 9k10:R (3.6) BS01 rna N/A GO:0000027 ... A0QYU6 40569974
    1003836 9k10:S (3.6) BS01 rna N/A GO:0003723 ... A0R151 40569974
    1003837 9k10:T (3.6) BS01 rna N/A GO:0003735 ... A0QSD6 40569974
    1003838 9k10:U (3.6) BS01 rna N/A GO:0003735 ... A0QSD3 40569974
    1003839 9k10:V (3.6) BS01 rna N/A GO:0003723 ... A0QSG0 40569974
    1003840 9k10:W (3.6) BS01 rna N/A GO:0003723 ... A0R3D2 40569974
    1003841 9k10:W (3.6) BS02 rna N/A GO:0003723 ... A0R3D2 40569974
    1003842 9k10:X (3.6) BS01 rna N/A GO:0003735 ... A0R150 40569974
    1003843 9k10:Y (3.6) BS01 rna N/A GO:0003735 ... A0QV03 40569974
    1003844 9k10:Y (3.6) BS02 ZN N/A GO:0003735 ... A0QV03 40569974
    1003845 9k10:Z (3.6) BS01 rna N/A GO:0003735 ... A0QSD9 40569974
    1003846 9k10:a (3.6) BS01 rna N/A GO:0003735 ... A0QSG7 40569974
    1003847 9k10:a (3.6) BS02 rna N/A GO:0003735 ... A0QSG7 40569974
    1003848 9k10:b (3.6) BS01 rna N/A GO:0003735 ... A0R3I9 40569974
    1003849 9k10:c (3.6) BS01 rna N/A GO:0003735 ... A0QS39 40569974
    1003850 9k10:c (3.6) BS02 ZN N/A GO:0003735 ... A0QS39 40569974
    1003851 9k10:d (3.6) BS01 rna N/A GO:0003735 ... A0R7K0 40569974
    1003852 9k10:e (3.6) BS01 rna N/A GO:0003735 ... A0QYU7 40569974
    1003853 9k10:f (3.6) BS01 rna N/A GO:0003735 ... A0QSL4 40569974
    1003854 9k10:f (3.6) BS02 ZN N/A GO:0003735 ... A0QSL4 40569974
    1003855 9k10:g (3.6) BS01 rna N/A GO:0003735 ... A0R215 40569974
    1003856 9k10:g (3.6) BS02 ZN N/A GO:0003735 ... A0R215 40569974
    1003857 9k1b:A (3.34) BS01 NA N/A GO:0005283 ... P31641 40789850
    1003858 9k1b:A (3.34) BS02 NA N/A GO:0005283 ... P31641 40789850
    1003859 9k1b:A (3.34) BS03 CL N/A GO:0005283 ... P31641 40789850
    1003860 9k1c:R (3.2) BS01 HXA N/A GO:0004930 ... O14842 39616615
    1003861 9k1d:R (3.34) BS01 BUA N/A GO:0002232 ... O15552 39616615
    1003862 9k1d:R (3.34) BS02 CLR N/A GO:0002232 ... O15552 39616615
    1003863 9k1d:R (3.34) BS03 CLR N/A GO:0002232 ... O15552 39616615
    1003864 9k1d:R (3.34) BS04 CLR N/A GO:0002232 ... O15552 39616615
    1003865 9k1d:R (3.34) BS05 CLR N/A GO:0002232 ... O15552 39616615
    1003866 9k1e:0 (2.68) BS01 CHL N/A N/A N/A N/A
    1003867 9k1e:0 (2.68) BS02 CHL N/A N/A N/A N/A
    1003868 9k1e:0 (2.68) BS03 CLA N/A N/A N/A N/A
    1003869 9k1e:0 (2.68) BS04 CLA N/A N/A N/A N/A
    1003870 9k1e:0 (2.68) BS05 CHL N/A N/A N/A N/A
    1003871 9k1e:0 (2.68) BS06 CHL N/A N/A N/A N/A
    1003872 9k1e:0 (2.68) BS07 CLA N/A N/A N/A N/A
    1003873 9k1e:0 (2.68) BS08 CLA N/A N/A N/A N/A
    1003874 9k1e:0 (2.68) BS09 CLA N/A N/A N/A N/A
    1003875 9k1e:0 (2.68) BS10 CLA N/A N/A N/A N/A
    1003876 9k1e:0 (2.68) BS11 CLA N/A N/A N/A N/A
    1003877 9k1e:0 (2.68) BS12 CLA N/A N/A N/A N/A
    1003878 9k1e:0 (2.68) BS13 CLA N/A N/A N/A N/A
    1003879 9k1e:0 (2.68) BS14 8CT N/A N/A N/A N/A
    1003880 9k1e:0 (2.68) BS15 0UR N/A N/A N/A N/A
    1003881 9k1e:0 (2.68) BS16 0UR N/A N/A N/A N/A
    1003882 9k1e:0 (2.68) BS17 CLA N/A N/A N/A N/A
    1003883 9k1e:0 (2.68) BS18 CLA N/A N/A N/A N/A
    1003884 9k1e:0 (2.68) BS19 CLA N/A N/A N/A N/A
    1003885 9k1e:1 (2.68) BS01 CHL N/A N/A N/A N/A
    1003886 9k1e:1 (2.68) BS02 CLA N/A N/A N/A N/A
    1003887 9k1e:1 (2.68) BS03 CLA N/A N/A N/A N/A
    1003888 9k1e:1 (2.68) BS04 CHL N/A N/A N/A N/A
    1003889 9k1e:1 (2.68) BS05 CHL N/A N/A N/A N/A
    1003890 9k1e:1 (2.68) BS06 CHL N/A N/A N/A N/A
    1003891 9k1e:1 (2.68) BS07 CLA N/A N/A N/A N/A
    1003892 9k1e:1 (2.68) BS08 CLA N/A N/A N/A N/A
    1003893 9k1e:1 (2.68) BS09 CLA N/A N/A N/A N/A
    1003894 9k1e:1 (2.68) BS10 CLA N/A N/A N/A N/A
    1003895 9k1e:1 (2.68) BS11 CLA N/A N/A N/A N/A
    1003896 9k1e:1 (2.68) BS12 CHL N/A N/A N/A N/A
    1003897 9k1e:1 (2.68) BS13 CLA N/A N/A N/A N/A
    1003898 9k1e:1 (2.68) BS14 8CT N/A N/A N/A N/A
    1003899 9k1e:1 (2.68) BS15 0UR N/A N/A N/A N/A
    1003900 9k1e:1 (2.68) BS16 0UR N/A N/A N/A N/A
    1003901 9k1e:1 (2.68) BS17 CLA N/A N/A N/A N/A
    1003902 9k1e:1 (2.68) BS18 CHL N/A N/A N/A N/A
    1003903 9k1e:2 (2.68) BS01 CHL N/A N/A N/A N/A
    1003904 9k1e:2 (2.68) BS02 CLA N/A N/A N/A N/A
    1003905 9k1e:2 (2.68) BS03 CLA N/A N/A N/A N/A
    1003906 9k1e:2 (2.68) BS04 CHL N/A N/A N/A N/A
    1003907 9k1e:2 (2.68) BS05 CHL N/A N/A N/A N/A
    1003908 9k1e:2 (2.68) BS06 CHL N/A N/A N/A N/A
    1003909 9k1e:2 (2.68) BS07 CHL N/A N/A N/A N/A
    1003910 9k1e:2 (2.68) BS08 CLA N/A N/A N/A N/A
    1003911 9k1e:2 (2.68) BS09 CLA N/A N/A N/A N/A
    1003912 9k1e:2 (2.68) BS10 CLA N/A N/A N/A N/A
    1003913 9k1e:2 (2.68) BS11 CLA N/A N/A N/A N/A
    1003914 9k1e:2 (2.68) BS12 CHL N/A N/A N/A N/A
    1003915 9k1e:2 (2.68) BS13 CLA N/A N/A N/A N/A
    1003916 9k1e:2 (2.68) BS14 8CT N/A N/A N/A N/A
    1003917 9k1e:2 (2.68) BS15 0UR N/A N/A N/A N/A
    1003918 9k1e:2 (2.68) BS16 0UR N/A N/A N/A N/A
    1003919 9k1e:2 (2.68) BS17 CHL N/A N/A N/A N/A
    1003920 9k1e:2 (2.68) BS18 CLA N/A N/A N/A N/A
    1003921 9k1e:2 (2.68) BS19 CHL N/A N/A N/A N/A
    1003922 9k1e:2 (2.68) BS20 CHL N/A N/A N/A N/A
    1003923 9k1e:3 (2.68) BS01 CHL N/A N/A N/A N/A
    1003924 9k1e:3 (2.68) BS02 CHL N/A N/A N/A N/A
    1003925 9k1e:3 (2.68) BS03 CHL N/A N/A N/A N/A
    1003926 9k1e:3 (2.68) BS04 CLA N/A N/A N/A N/A
    1003927 9k1e:3 (2.68) BS05 CLA N/A N/A N/A N/A
    1003928 9k1e:3 (2.68) BS06 CHL N/A N/A N/A N/A
    1003929 9k1e:3 (2.68) BS07 CLA N/A N/A N/A N/A
    1003930 9k1e:3 (2.68) BS08 CHL N/A N/A N/A N/A
    1003931 9k1e:3 (2.68) BS09 CLA N/A N/A N/A N/A
    1003932 9k1e:3 (2.68) BS10 CLA N/A N/A N/A N/A
    1003933 9k1e:3 (2.68) BS11 CLA N/A N/A N/A N/A
    1003934 9k1e:3 (2.68) BS12 CLA N/A N/A N/A N/A
    1003935 9k1e:3 (2.68) BS13 CLA N/A N/A N/A N/A
    1003936 9k1e:3 (2.68) BS14 CLA N/A N/A N/A N/A
    1003937 9k1e:3 (2.68) BS15 CLA N/A N/A N/A N/A
    1003938 9k1e:3 (2.68) BS16 CLA N/A N/A N/A N/A
    1003939 9k1e:3 (2.68) BS17 8CT N/A N/A N/A N/A
    1003940 9k1e:3 (2.68) BS18 8CT N/A N/A N/A N/A
    1003941 9k1e:3 (2.68) BS19 0UR N/A N/A N/A N/A
    1003942 9k1e:3 (2.68) BS20 0IE N/A N/A N/A N/A
    1003943 9k1e:3 (2.68) BS21 8CT N/A N/A N/A N/A
    1003944 9k1e:3 (2.68) BS22 CHL N/A N/A N/A N/A
    1003945 9k1e:3 (2.68) BS23 CLA N/A N/A N/A N/A
    1003946 9k1e:3 (2.68) BS24 CLA N/A N/A N/A N/A
    1003947 9k1e:3 (2.68) BS25 CLA N/A N/A N/A N/A
    1003948 9k1e:4 (2.68) BS01 CLA N/A N/A N/A N/A
    1003949 9k1e:4 (2.68) BS02 CHL N/A N/A N/A N/A
    1003950 9k1e:4 (2.68) BS03 CHL N/A N/A N/A N/A
    1003951 9k1e:4 (2.68) BS04 CLA N/A N/A N/A N/A
    1003952 9k1e:4 (2.68) BS05 CLA N/A N/A N/A N/A
    1003953 9k1e:4 (2.68) BS06 CHL N/A N/A N/A N/A
    1003954 9k1e:4 (2.68) BS07 CHL N/A N/A N/A N/A
    1003955 9k1e:4 (2.68) BS08 CHL N/A N/A N/A N/A
    1003956 9k1e:4 (2.68) BS09 CHL N/A N/A N/A N/A
    1003957 9k1e:4 (2.68) BS10 CLA N/A N/A N/A N/A
    1003958 9k1e:4 (2.68) BS11 CLA N/A N/A N/A N/A
    1003959 9k1e:4 (2.68) BS12 CLA N/A N/A N/A N/A
    1003960 9k1e:4 (2.68) BS13 CLA N/A N/A N/A N/A
    1003961 9k1e:4 (2.68) BS14 CHL N/A N/A N/A N/A
    1003962 9k1e:4 (2.68) BS15 CLA N/A N/A N/A N/A
    1003963 9k1e:4 (2.68) BS16 CHL N/A N/A N/A N/A
    1003964 9k1e:4 (2.68) BS17 8CT N/A N/A N/A N/A
    1003965 9k1e:4 (2.68) BS18 0UR N/A N/A N/A N/A
    1003966 9k1e:4 (2.68) BS19 0UR N/A N/A N/A N/A
    1003967 9k1e:5 (2.68) BS01 CHL N/A N/A N/A N/A
    1003968 9k1e:5 (2.68) BS02 CLA N/A N/A N/A N/A
    1003969 9k1e:5 (2.68) BS03 CLA N/A N/A N/A N/A
    1003970 9k1e:5 (2.68) BS04 CHL N/A N/A N/A N/A
    1003971 9k1e:5 (2.68) BS05 CHL N/A N/A N/A N/A
    1003972 9k1e:5 (2.68) BS06 CHL N/A N/A N/A N/A
    1003973 9k1e:5 (2.68) BS07 CLA N/A N/A N/A N/A
    1003974 9k1e:5 (2.68) BS08 CLA N/A N/A N/A N/A
    1003975 9k1e:5 (2.68) BS09 CLA N/A N/A N/A N/A
    1003976 9k1e:5 (2.68) BS10 CLA N/A N/A N/A N/A
    1003977 9k1e:5 (2.68) BS11 CHL N/A N/A N/A N/A
    1003978 9k1e:5 (2.68) BS12 CLA N/A N/A N/A N/A
    1003979 9k1e:5 (2.68) BS13 0UR N/A N/A N/A N/A
    1003980 9k1e:5 (2.68) BS14 0UR N/A N/A N/A N/A
    1003981 9k1e:5 (2.68) BS15 CHL N/A N/A N/A N/A
    1003982 9k1e:6 (2.68) BS01 CHL N/A N/A N/A N/A
    1003983 9k1e:6 (2.68) BS02 CHL N/A N/A N/A N/A
    1003984 9k1e:6 (2.68) BS03 CLA N/A N/A N/A N/A
    1003985 9k1e:6 (2.68) BS04 CLA N/A N/A N/A N/A
    1003986 9k1e:6 (2.68) BS05 CHL N/A N/A N/A N/A
    1003987 9k1e:6 (2.68) BS06 CHL N/A N/A N/A N/A
    1003988 9k1e:6 (2.68) BS07 CHL N/A N/A N/A N/A
    1003989 9k1e:6 (2.68) BS08 CHL N/A N/A N/A N/A
    1003990 9k1e:6 (2.68) BS09 CLA N/A N/A N/A N/A
    1003991 9k1e:6 (2.68) BS10 CLA N/A N/A N/A N/A
    1003992 9k1e:6 (2.68) BS11 CLA N/A N/A N/A N/A
    1003993 9k1e:6 (2.68) BS12 CLA N/A N/A N/A N/A
    1003994 9k1e:6 (2.68) BS13 CHL N/A N/A N/A N/A
    1003995 9k1e:6 (2.68) BS14 CLA N/A N/A N/A N/A
    1003996 9k1e:6 (2.68) BS15 CHL N/A N/A N/A N/A
    1003997 9k1e:6 (2.68) BS16 CLA N/A N/A N/A N/A
    1003998 9k1e:6 (2.68) BS17 CLA N/A N/A N/A N/A
    1003999 9k1e:6 (2.68) BS18 CLA N/A N/A N/A N/A
    1004000 9k1e:6 (2.68) BS19 8CT N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).