SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1005201 9k3v:W (3.5) BS01 dna N/A GO:0000126 ... A6H8Y1 40468065
    1005202 9k3v:W (3.5) BS02 dna N/A GO:0000126 ... A6H8Y1 40468065
    1005203 9k3x:E (2.9) BS01 PO4 N/A N/A N/A 41634007
    1005204 9k3z:A (2.75) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005205 9k3z:A (2.75) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005206 9k3z:B (2.75) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005207 9k3z:B (2.75) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005208 9k3z:C (2.75) BS01 dna N/A GO:0000325 ... Q9C944 40359943
    1005209 9k3z:C (2.75) BS02 dna N/A GO:0000325 ... Q9C944 40359943
    1005210 9k3z:D (2.75) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005211 9k3z:D (2.75) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005212 9k3z:E (2.75) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005213 9k3z:E (2.75) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005214 9k3z:F (2.75) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005215 9k3z:F (2.75) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005216 9k3z:G (2.75) BS01 dna N/A GO:0000325 ... Q9C944 40359943
    1005217 9k3z:G (2.75) BS02 dna N/A GO:0000325 ... Q9C944 40359943
    1005218 9k3z:H (2.75) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005219 9k40:A (3.15) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005220 9k40:A (3.15) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005221 9k40:B (3.15) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005222 9k40:B (3.15) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005223 9k40:C (3.15) BS01 dna N/A GO:0000786 ... Q9LD28 40359943
    1005224 9k40:C (3.15) BS02 dna N/A GO:0000786 ... Q9LD28 40359943
    1005225 9k40:D (3.15) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005226 9k40:D (3.15) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005227 9k40:E (3.15) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005228 9k40:E (3.15) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005229 9k40:F (3.15) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005230 9k40:F (3.15) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005231 9k40:G (3.15) BS01 dna N/A GO:0000786 ... Q9LD28 40359943
    1005232 9k40:G (3.15) BS02 dna N/A GO:0000786 ... Q9LD28 40359943
    1005233 9k40:H (3.15) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005234 9k40:H (3.15) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005235 9k41:A (2.81) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005236 9k41:A (2.81) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005237 9k41:B (2.81) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005238 9k41:B (2.81) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005239 9k41:C (2.81) BS01 dna N/A GO:0000786 ... Q9FJE8 40359943
    1005240 9k41:C (2.81) BS02 dna N/A GO:0000786 ... Q9FJE8 40359943
    1005241 9k41:D (2.81) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005242 9k41:D (2.81) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005243 9k41:E (2.81) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005244 9k41:E (2.81) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005245 9k41:F (2.81) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005246 9k41:F (2.81) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005247 9k41:G (2.81) BS01 dna N/A GO:0000786 ... Q9FJE8 40359943
    1005248 9k41:G (2.81) BS02 dna N/A GO:0000786 ... Q9FJE8 40359943
    1005249 9k41:H (2.81) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005250 9k41:H (2.81) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005251 9k42:A (3.14) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005252 9k42:A (3.14) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005253 9k42:B (3.14) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005254 9k42:B (3.14) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005255 9k42:C (3.14) BS01 dna N/A GO:0000786 ... Q9LD28 40359943
    1005256 9k42:C (3.14) BS02 dna N/A GO:0000786 ... Q9LD28 40359943
    1005257 9k42:D (3.14) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005258 9k42:D (3.14) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005259 9k42:E (3.14) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005260 9k42:E (3.14) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005261 9k42:F (3.14) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005262 9k42:F (3.14) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005263 9k42:G (3.14) BS01 dna N/A GO:0000786 ... Q9LD28 40359943
    1005264 9k42:G (3.14) BS02 dna N/A GO:0000786 ... Q9LD28 40359943
    1005265 9k42:H (3.14) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005266 9k42:H (3.14) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005267 9k43:A (2.87) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005268 9k43:A (2.87) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005269 9k43:B (2.87) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005270 9k43:B (2.87) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005271 9k43:C (2.87) BS01 dna N/A GO:0000325 ... Q9C944 40359943
    1005272 9k43:C (2.87) BS02 dna N/A GO:0000325 ... Q9C944 40359943
    1005273 9k43:D (2.87) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005274 9k43:D (2.87) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005275 9k43:E (2.87) BS01 dna N/A GO:0000786 ... P59226 40359943
    1005276 9k43:E (2.87) BS02 dna N/A GO:0000786 ... P59226 40359943
    1005277 9k43:F (2.87) BS01 dna N/A GO:0000325 ... P59259 40359943
    1005278 9k43:F (2.87) BS02 dna N/A GO:0000325 ... P59259 40359943
    1005279 9k43:G (2.87) BS01 dna N/A GO:0000325 ... Q9C944 40359943
    1005280 9k43:G (2.87) BS02 dna N/A GO:0000325 ... Q9C944 40359943
    1005281 9k43:H (2.87) BS01 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005282 9k43:H (2.87) BS02 dna N/A GO:0000786 ... Q9LQQ4 40359943
    1005283 9k44:A (3.22) BS01 dna N/A GO:0000786 ... P59169 N/A
    1005284 9k44:A (3.22) BS02 dna N/A GO:0000786 ... P59169 N/A
    1005285 9k44:B (3.22) BS01 dna N/A GO:0000325 ... P59259 N/A
    1005286 9k44:B (3.22) BS02 dna N/A GO:0000325 ... P59259 N/A
    1005287 9k44:C (3.22) BS01 dna N/A GO:0000786 ... Q9LD28 N/A
    1005288 9k44:C (3.22) BS02 dna N/A GO:0000786 ... Q9LD28 N/A
    1005289 9k44:D (3.22) BS01 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005290 9k44:D (3.22) BS02 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005291 9k44:E (3.22) BS01 dna N/A GO:0000786 ... P59169 N/A
    1005292 9k44:E (3.22) BS02 dna N/A GO:0000786 ... P59169 N/A
    1005293 9k44:F (3.22) BS01 dna N/A GO:0000325 ... P59259 N/A
    1005294 9k44:F (3.22) BS02 dna N/A GO:0000325 ... P59259 N/A
    1005295 9k44:G (3.22) BS01 dna N/A GO:0000786 ... Q9LD28 N/A
    1005296 9k44:G (3.22) BS02 dna N/A GO:0000786 ... Q9LD28 N/A
    1005297 9k44:H (3.22) BS01 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005298 9k45:A (2.71) BS01 dna N/A GO:0000786 ... P59169 N/A
    1005299 9k45:A (2.71) BS02 dna N/A GO:0000786 ... P59169 N/A
    1005300 9k45:B (2.71) BS01 dna N/A GO:0000325 ... P59259 N/A
    1005301 9k45:C (2.71) BS01 dna N/A GO:0000325 ... Q9C944 N/A
    1005302 9k45:C (2.71) BS02 dna N/A GO:0000325 ... Q9C944 N/A
    1005303 9k45:D (2.71) BS01 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005304 9k45:D (2.71) BS02 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005305 9k45:E (2.71) BS01 dna N/A GO:0000786 ... P59169 N/A
    1005306 9k45:E (2.71) BS02 dna N/A GO:0000786 ... P59169 N/A
    1005307 9k45:F (2.71) BS01 dna N/A GO:0000325 ... P59259 N/A
    1005308 9k45:F (2.71) BS02 dna N/A GO:0000325 ... P59259 N/A
    1005309 9k45:G (2.71) BS01 dna N/A GO:0000325 ... Q9C944 N/A
    1005310 9k45:G (2.71) BS02 dna N/A GO:0000325 ... Q9C944 N/A
    1005311 9k45:H (2.71) BS01 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005312 9k46:A (2.85) BS01 dna N/A GO:0000786 ... P59169 N/A
    1005313 9k46:A (2.85) BS02 dna N/A GO:0000786 ... P59169 N/A
    1005314 9k46:B (2.85) BS01 dna N/A GO:0000325 ... P59259 N/A
    1005315 9k46:B (2.85) BS02 dna N/A GO:0000325 ... P59259 N/A
    1005316 9k46:C (2.85) BS01 dna N/A GO:0000786 ... Q9FJE8 N/A
    1005317 9k46:C (2.85) BS02 dna N/A GO:0000786 ... Q9FJE8 N/A
    1005318 9k46:D (2.85) BS01 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005319 9k46:D (2.85) BS02 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005320 9k46:E (2.85) BS01 dna N/A GO:0000786 ... P59169 N/A
    1005321 9k46:E (2.85) BS02 dna N/A GO:0000786 ... P59169 N/A
    1005322 9k46:F (2.85) BS01 dna N/A GO:0000325 ... P59259 N/A
    1005323 9k46:F (2.85) BS02 dna N/A GO:0000325 ... P59259 N/A
    1005324 9k46:G (2.85) BS01 dna N/A GO:0000786 ... Q9FJE8 N/A
    1005325 9k46:G (2.85) BS02 dna N/A GO:0000786 ... Q9FJE8 N/A
    1005326 9k46:H (2.85) BS01 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005327 9k46:H (2.85) BS02 dna N/A GO:0000786 ... Q9LQQ4 N/A
    1005328 9k49:A (3.6) BS01 peptide N/A GO:0005515 ... P0ABU9 40589080
    1005329 9k49:A (3.6) BS02 peptide N/A GO:0005515 ... P0ABU9 40589080
    1005330 9k49:B (3.6) BS01 peptide N/A GO:0005515 ... P0ABU9 40589080
    1005331 9k49:C (3.6) BS01 peptide N/A GO:0005515 ... P0ABU9 40589080
    1005332 9k49:D (3.6) BS01 peptide N/A GO:0005515 ... P0ABU9 40589080
    1005333 9k49:D (3.6) BS02 peptide N/A GO:0005515 ... P0ABU9 40589080
    1005334 9k49:E (3.6) BS01 peptide N/A GO:0005515 ... P0ABU9 40589080
    1005335 9k4c:A (3.84) BS01 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005336 9k4c:A (3.84) BS02 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005337 9k4c:A (3.84) BS03 rna N/A GO:0003676 ... Q99ZW2 N/A
    1005338 9k4d:A (3.53) BS01 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005339 9k4d:A (3.53) BS02 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005340 9k4d:A (3.53) BS03 rna N/A GO:0003676 ... Q99ZW2 N/A
    1005341 9k4e:A (3.3) BS01 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005342 9k4e:A (3.3) BS02 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005343 9k4e:A (3.3) BS03 rna N/A GO:0003676 ... Q99ZW2 N/A
    1005344 9k4f:A (3.27) BS01 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005345 9k4f:A (3.27) BS02 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005346 9k4f:A (3.27) BS03 rna N/A GO:0003676 ... Q99ZW2 N/A
    1005347 9k4h:A (3.36) BS01 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005348 9k4h:A (3.36) BS02 dna N/A GO:0003676 ... Q99ZW2 N/A
    1005349 9k4h:A (3.36) BS03 rna N/A GO:0003676 ... Q99ZW2 N/A
    1005350 9k4i:A (2.84) BS01 CA N/A GO:0005216 ... Q9QX29 N/A
    1005351 9k4i:A (2.84) BS02 Y01 N/A GO:0005216 ... Q9QX29 N/A
    1005352 9k4i:A (2.84) BS03 YZY N/A GO:0005216 ... Q9QX29 N/A
    1005353 9k4i:B (2.84) BS01 YZY N/A GO:0005102 ... A0A076JQ90
    P48995
    N/A
    1005354 9k4i:C (2.84) BS01 CA N/A GO:0005216 ... Q9QX29 N/A
    1005355 9k4i:C (2.84) BS02 Y01 N/A GO:0005216 ... Q9QX29 N/A
    1005356 9k4i:C (2.84) BS03 YZY N/A GO:0005216 ... Q9QX29 N/A
    1005357 9k4i:D (2.84) BS01 YZY N/A GO:0005216 ... Q9QX29 N/A
    1005358 9k4i:D (2.84) BS02 CA N/A GO:0005216 ... Q9QX29 N/A
    1005359 9k4i:D (2.84) BS03 Y01 N/A GO:0005216 ... Q9QX29 N/A
    1005360 9k4q:A (2.0) BS01 ZN N/A N/A N/A N/A
    1005361 9k4q:C (2.0) BS01 ZN N/A N/A N/A N/A
    1005362 9k5h:A (1.8) BS01 ZN N/A N/A N/A N/A
    1005363 9k5p:A (2.15) BS01 ZN N/A N/A N/A N/A
    1005364 9k5p:A (2.15) BS02 ZN N/A N/A N/A N/A
    1005365 9k5p:A (2.15) BS03 ZN N/A N/A N/A N/A
    1005366 9k5p:A (2.15) BS04 ZN N/A N/A N/A N/A
    1005367 9k5p:B (2.15) BS01 ZN N/A N/A N/A N/A
    1005368 9k5p:B (2.15) BS02 ZN N/A N/A N/A N/A
    1005369 9k5p:B (2.15) BS03 ZN N/A N/A N/A N/A
    1005370 9k5p:B (2.15) BS04 ZN N/A N/A N/A N/A
    1005371 9k5p:C (2.15) BS01 ZN N/A N/A N/A N/A
    1005372 9k5p:C (2.15) BS02 ZN N/A N/A N/A N/A
    1005373 9k5p:C (2.15) BS03 ZN N/A N/A N/A N/A
    1005374 9k5p:C (2.15) BS04 ZN N/A N/A N/A N/A
    1005375 9k6g:A (3.3) BS01 dna N/A GO:0003824 ... O00370 41066570
    1005376 9k6g:A (3.3) BS02 dna N/A GO:0003824 ... O00370 41066570
    1005377 9k6g:A (3.3) BS03 dna N/A GO:0003824 ... O00370 41066570
    1005378 9k6g:A (3.3) BS04 rna N/A GO:0003824 ... O00370 41066570
    1005379 9k6g:A (3.3) BS05 ZN N/A GO:0003824 ... O00370 41066570
    1005380 9k6h:A (3.0) BS01 dna N/A GO:0003824 ... O00370 41066570
    1005381 9k6h:A (3.0) BS02 dna N/A GO:0003824 ... O00370 41066570
    1005382 9k6h:A (3.0) BS03 dna N/A GO:0003824 ... O00370 41066570
    1005383 9k6h:A (3.0) BS04 rna N/A GO:0003824 ... O00370 41066570
    1005384 9k6h:A (3.0) BS05 DTP N/A GO:0003824 ... O00370 41066570
    1005385 9k6h:A (3.0) BS06 ZN N/A GO:0003824 ... O00370 41066570
    1005386 9k6h:A (3.0) BS07 MN N/A GO:0003824 ... O00370 41066570
    1005387 9k6i:A (3.6) BS01 dna N/A GO:0003824 ... O00370 41066570
    1005388 9k6i:A (3.6) BS02 dna N/A GO:0003824 ... O00370 41066570
    1005389 9k6i:A (3.6) BS03 dna N/A GO:0003824 ... O00370 41066570
    1005390 9k6i:A (3.6) BS04 rna N/A GO:0003824 ... O00370 41066570
    1005391 9k6i:A (3.6) BS05 ZN N/A GO:0003824 ... O00370 41066570
    1005392 9k6k:A (2.826) BS01 ZN N/A GO:0000166 ... A0A7H0DN73 40020877
    1005393 9k6k:A (2.826) BS02 PO4 N/A GO:0000166 ... A0A7H0DN73 40020877
    1005394 9k6k:B (2.826) BS01 TTP N/A GO:0000166 ... A0A7H0DN73 40020877
    1005395 9k6k:B (2.826) BS02 ZN N/A GO:0000166 ... A0A7H0DN73 40020877
    1005396 9k6k:C (2.826) BS01 ZN N/A GO:0000166 ... A0A7H0DN73 40020877
    1005397 9k6k:D (2.826) BS01 ZN N/A GO:0000166 ... A0A7H0DN73 40020877
    1005398 9k6k:D (2.826) BS02 PO4 N/A GO:0000166 ... A0A7H0DN73 40020877
    1005399 9k6l:R (2.77) BS01 SA0 N/A GO:0001580 ... Q9NYV7 40261795
    1005400 9k6m:A (2.502) BS01 CA N/A GO:0005509 ... Q54JS1 40399431

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).