SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1008201 9kdh:B (2.52) BS06 CLR N/A GO:0003779 ... P23975 41138730
    1008202 9kdh:B (2.52) BS07 CLR N/A GO:0003779 ... P23975 41138730
    1008203 9kdh:B (2.52) BS08 CLR N/A GO:0003779 ... P23975 41138730
    1008204 9kdh:B (2.52) BS09 A1EFM N/A GO:0003779 ... P23975 41138730
    1008205 9kdh:B (2.52) BS10 CLR N/A GO:0003779 ... P23975 41138730
    1008206 9kdh:B (2.52) BS11 A1D5S N/A GO:0003779 ... P23975 41138730
    1008207 9kdm:A (2.46) BS01 F0F N/A GO:0003779 ... P23975 41138730
    1008208 9kdm:A (2.46) BS02 CLR N/A GO:0003779 ... P23975 41138730
    1008209 9kdm:A (2.46) BS03 CLR N/A GO:0003779 ... P23975 41138730
    1008210 9kdm:A (2.46) BS04 CLR N/A GO:0003779 ... P23975 41138730
    1008211 9kdm:A (2.46) BS05 CLR N/A GO:0003779 ... P23975 41138730
    1008212 9kdm:A (2.46) BS06 CLR N/A GO:0003779 ... P23975 41138730
    1008213 9kdm:A (2.46) BS07 A1EFM N/A GO:0003779 ... P23975 41138730
    1008214 9kdm:B (2.46) BS01 F0F N/A GO:0003779 ... P23975 41138730
    1008215 9kdm:B (2.46) BS02 CLR N/A GO:0003779 ... P23975 41138730
    1008216 9kdm:B (2.46) BS03 CLR N/A GO:0003779 ... P23975 41138730
    1008217 9kdm:B (2.46) BS04 CLR N/A GO:0003779 ... P23975 41138730
    1008218 9kdm:B (2.46) BS05 CLR N/A GO:0003779 ... P23975 41138730
    1008219 9kdm:B (2.46) BS06 CLR N/A GO:0003779 ... P23975 41138730
    1008220 9kdm:B (2.46) BS07 A1EFM N/A GO:0003779 ... P23975 41138730
    1008221 9kdn:A (2.96) BS01 peptide N/A GO:0001172 ... P04050 N/A
    1008222 9kdn:A (2.96) BS02 rna N/A GO:0001172 ... P04050 N/A
    1008223 9kdn:A (2.96) BS03 dna N/A GO:0001172 ... P04050 N/A
    1008224 9kdn:A (2.96) BS04 ZN N/A GO:0001172 ... P04050 N/A
    1008225 9kdn:A (2.96) BS05 ZN N/A GO:0001172 ... P04050 N/A
    1008226 9kdn:A (2.96) BS06 MG N/A GO:0001172 ... P04050 N/A
    1008227 9kdn:B (2.96) BS01 dna N/A GO:0001172 ... P08518 N/A
    1008228 9kdn:B (2.96) BS02 rna N/A GO:0001172 ... P08518 N/A
    1008229 9kdn:B (2.96) BS03 dna N/A GO:0001172 ... P08518 N/A
    1008230 9kdn:B (2.96) BS04 ZN N/A GO:0001172 ... P08518 N/A
    1008231 9kdn:C (2.96) BS01 ZN N/A GO:0000428 ... P16370 N/A
    1008232 9kdn:E (2.96) BS01 dna N/A GO:0001172 ... P20434 N/A
    1008233 9kdn:I (2.96) BS01 ZN N/A GO:0001172 ... P27999 N/A
    1008234 9kdn:I (2.96) BS02 ZN N/A GO:0001172 ... P27999 N/A
    1008235 9kdn:J (2.96) BS01 ZN N/A GO:0001172 ... P22139 N/A
    1008236 9kdn:L (2.96) BS01 ZN N/A GO:0001172 ... P40422 N/A
    1008237 9kdo:A (2.92) BS01 rna N/A GO:0001172 ... P04050 N/A
    1008238 9kdo:A (2.92) BS02 dna N/A GO:0001172 ... P04050 N/A
    1008239 9kdo:A (2.92) BS03 ZN N/A GO:0001172 ... P04050 N/A
    1008240 9kdo:A (2.92) BS04 ZN N/A GO:0001172 ... P04050 N/A
    1008241 9kdo:A (2.92) BS05 MG N/A GO:0001172 ... P04050 N/A
    1008242 9kdo:B (2.92) BS01 dna N/A GO:0001172 ... P08518 N/A
    1008243 9kdo:B (2.92) BS02 rna N/A GO:0001172 ... P08518 N/A
    1008244 9kdo:B (2.92) BS03 dna N/A GO:0001172 ... P08518 N/A
    1008245 9kdo:B (2.92) BS04 ZN N/A GO:0001172 ... P08518 N/A
    1008246 9kdo:C (2.92) BS01 ZN N/A GO:0000428 ... P16370 N/A
    1008247 9kdo:I (2.92) BS01 ZN N/A GO:0001172 ... P27999 N/A
    1008248 9kdo:I (2.92) BS02 ZN N/A GO:0001172 ... P27999 N/A
    1008249 9kdo:J (2.92) BS01 ZN N/A GO:0001172 ... P22139 N/A
    1008250 9kdo:L (2.92) BS01 ZN N/A GO:0001172 ... P40422 N/A
    1008251 9kdq:A (2.63) BS01 rna N/A GO:0003677 ... P04050 N/A
    1008252 9kdq:A (2.63) BS02 dna N/A GO:0003677 ... P04050 N/A
    1008253 9kdq:A (2.63) BS03 ZN N/A GO:0003677 ... P04050 N/A
    1008254 9kdq:A (2.63) BS04 ZN N/A GO:0003677 ... P04050 N/A
    1008255 9kdq:A (2.63) BS05 MG N/A GO:0003677 ... P04050 N/A
    1008256 9kdq:B (2.63) BS01 dna N/A GO:0001172 ... P08518 N/A
    1008257 9kdq:B (2.63) BS02 rna N/A GO:0001172 ... P08518 N/A
    1008258 9kdq:B (2.63) BS03 dna N/A GO:0001172 ... P08518 N/A
    1008259 9kdq:B (2.63) BS04 ZN N/A GO:0001172 ... P08518 N/A
    1008260 9kdq:C (2.63) BS01 ZN N/A GO:0003677 ... P16370 N/A
    1008261 9kdq:I (2.63) BS01 ZN N/A GO:0001172 ... P27999 N/A
    1008262 9kdq:I (2.63) BS02 ZN N/A GO:0001172 ... P27999 N/A
    1008263 9kdq:J (2.63) BS01 ZN N/A GO:0001172 ... P22139 N/A
    1008264 9kdq:L (2.63) BS01 ZN N/A GO:0001172 ... P40422 N/A
    1008265 9ke3:A (3.13) BS01 A1EFR N/A GO:0003779 ... P23975 41138730
    1008266 9ke3:A (3.13) BS02 CLR N/A GO:0003779 ... P23975 41138730
    1008267 9ke3:A (3.13) BS03 CLR N/A GO:0003779 ... P23975 41138730
    1008268 9ke3:A (3.13) BS04 CLR N/A GO:0003779 ... P23975 41138730
    1008269 9ke3:A (3.13) BS05 CLR N/A GO:0003779 ... P23975 41138730
    1008270 9ke3:A (3.13) BS06 CLR N/A GO:0003779 ... P23975 41138730
    1008271 9ke3:A (3.13) BS07 CLR N/A GO:0003779 ... P23975 41138730
    1008272 9ke3:A (3.13) BS08 A1EFM N/A GO:0003779 ... P23975 41138730
    1008273 9ke3:B (3.13) BS01 CLR N/A GO:0003779 ... P23975 41138730
    1008274 9ke3:B (3.13) BS02 CLR N/A GO:0003779 ... P23975 41138730
    1008275 9ke3:B (3.13) BS03 CLR N/A GO:0003779 ... P23975 41138730
    1008276 9ke3:B (3.13) BS04 CLR N/A GO:0003779 ... P23975 41138730
    1008277 9ke3:B (3.13) BS05 CLR N/A GO:0003779 ... P23975 41138730
    1008278 9ke3:B (3.13) BS06 A1EFM N/A GO:0003779 ... P23975 41138730
    1008279 9ke3:B (3.13) BS07 A1EFR N/A GO:0003779 ... P23975 41138730
    1008280 9ke3:B (3.13) BS08 CLR N/A GO:0003779 ... P23975 41138730
    1008281 9ke5:A (2.05) BS01 A1EE3 N/A GO:0000413 ... Q13526 N/A
    1008282 9ke7:A (1.68) BS01 A1EE7 N/A GO:0000413 ... Q13526 40803165
    1008283 9ke8:A (1.86) BS01 NMN N/A GO:0003824 ... G1U9V7 N/A
    1008284 9ke8:A (1.86) BS02 NMN N/A GO:0003824 ... G1U9V7 N/A
    1008285 9ke8:B (1.86) BS01 NMN N/A GO:0003824 ... G1U9V7 N/A
    1008286 9ke8:B (1.86) BS02 NMN N/A GO:0003824 ... G1U9V7 N/A
    1008287 9ke9:A (2.25) BS01 A1BDV N/A GO:0000413 ... Q13526 40803165
    1008288 9kea:A (2.3) BS01 HEM N/A N/A A0A7K3RVR3 N/A
    1008289 9kea:A (2.3) BS02 HEM N/A N/A A0A7K3RVR3 N/A
    1008290 9kea:B (2.3) BS01 HEM N/A N/A A0A7K3RVR3 N/A
    1008291 9kea:B (2.3) BS02 HEM N/A N/A A0A7K3RVR3 N/A
    1008292 9kea:C (2.3) BS01 HEM N/A N/A A0A7K3RVR3 N/A
    1008293 9kea:C (2.3) BS02 HEM N/A N/A A0A7K3RVR3 N/A
    1008294 9kea:D (2.3) BS01 HEM N/A N/A A0A7K3RVR3 N/A
    1008295 9keb:A (1.65) BS01 A1EE8 N/A GO:0000413 ... Q13526 40803165
    1008296 9kec:A (1.68) BS01 A1EE6 N/A GO:0000413 ... Q13526 40803165
    1008297 9kee:A (2.08) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008298 9kee:A (2.08) BS02 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008299 9kee:A (2.08) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008300 9kee:A (2.08) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008301 9kee:B (2.08) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008302 9kee:B (2.08) BS02 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008303 9kee:B (2.08) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008304 9kee:B (2.08) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008305 9keg:A (1.8) BS01 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008306 9keg:A (1.8) BS02 ZN N/A GO:0004462 ... Q04760 N/A
    1008307 9keg:A (1.8) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008308 9keg:A (1.8) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008309 9keg:B (1.8) BS01 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008310 9keg:B (1.8) BS02 ZN N/A GO:0004462 ... Q04760 N/A
    1008311 9keg:B (1.8) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008312 9keg:B (1.8) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008313 9keh:A (1.72) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008314 9keh:A (1.72) BS02 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008315 9keh:A (1.72) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008316 9keh:A (1.72) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008317 9keh:B (1.72) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008318 9keh:B (1.72) BS02 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008319 9keh:B (1.72) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008320 9keh:B (1.72) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008321 9keh:B (1.72) BS05 GSH N/A GO:0004462 ... Q04760 N/A
    1008322 9kei:A (1.81) BS01 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008323 9kei:A (1.81) BS02 ZN N/A GO:0004462 ... Q04760 N/A
    1008324 9kei:A (1.81) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008325 9kei:A (1.81) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008326 9kei:B (1.81) BS01 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008327 9kei:B (1.81) BS02 ZN N/A GO:0004462 ... Q04760 N/A
    1008328 9kei:B (1.81) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008329 9kei:B (1.81) BS04 A1L5R N/A GO:0004462 ... Q04760 N/A
    1008330 9kej:A (3.04) BS01 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008331 9kej:A (3.04) BS02 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008332 9kej:B (3.04) BS01 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008333 9kej:B (3.04) BS02 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008334 9kej:B (3.04) BS03 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008335 9kej:C (3.04) BS01 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008336 9kej:C (3.04) BS02 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008337 9kej:C (3.04) BS03 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008338 9kej:D (3.04) BS01 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008339 9kej:D (3.04) BS02 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008340 9kej:D (3.04) BS03 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008341 9kej:E (3.04) BS01 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008342 9kej:E (3.04) BS02 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008343 9kej:E (3.04) BS03 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008344 9kej:F (3.04) BS01 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008345 9kej:F (3.04) BS02 4BW N/A GO:0006629 ... A0A505MGQ1 41022836
    1008346 9kek:A (2.11) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008347 9kek:A (2.11) BS02 PIT N/A GO:0004462 ... Q04760 N/A
    1008348 9kek:A (2.11) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008349 9kek:A (2.11) BS04 PIT N/A GO:0004462 ... Q04760 N/A
    1008350 9kek:B (2.11) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008351 9kek:B (2.11) BS02 PIT N/A GO:0004462 ... Q04760 N/A
    1008352 9kek:B (2.11) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008353 9kek:B (2.11) BS04 PIT N/A GO:0004462 ... Q04760 N/A
    1008354 9kek:C (2.11) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008355 9kek:C (2.11) BS02 PIT N/A GO:0004462 ... Q04760 N/A
    1008356 9kek:C (2.11) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008357 9kek:D (2.11) BS01 ZN N/A GO:0004462 ... Q04760 N/A
    1008358 9kek:D (2.11) BS02 PIT N/A GO:0004462 ... Q04760 N/A
    1008359 9kek:D (2.11) BS03 ZN N/A GO:0004462 ... Q04760 N/A
    1008360 9kel:A (1.96) BS01 A1EFA N/A GO:0000413 ... Q13526 40803165
    1008361 9keo:A (2.62) BS01 NCA N/A GO:0003824 ... G1U9V7 N/A
    1008362 9keo:A (2.62) BS02 NCA N/A GO:0003824 ... G1U9V7 N/A
    1008363 9keo:B (2.62) BS01 NCA N/A GO:0003824 ... G1U9V7 N/A
    1008364 9keo:B (2.62) BS02 NCA N/A GO:0003824 ... G1U9V7 N/A
    1008365 9keo:B (2.62) BS03 NCA N/A GO:0003824 ... G1U9V7 N/A
    1008366 9keq:A (1.53) BS01 A1EFB N/A GO:0000413 ... Q13526 40803165
    1008367 9kes:A (1.62) BS01 A1EFC N/A GO:0000413 ... Q13526 40803165
    1008368 9ket:C (3.46) BS01 dna N/A GO:0000345 ... P9WGY9 39948061
    1008369 9ket:C (3.46) BS02 dna N/A GO:0000345 ... P9WGY9 39948061
    1008370 9ket:D (3.46) BS01 dna N/A GO:0000287 ... P9WGY7 39948061
    1008371 9ket:D (3.46) BS02 dna N/A GO:0000287 ... P9WGY7 39948061
    1008372 9ket:D (3.46) BS03 ZN N/A GO:0000287 ... P9WGY7 39948061
    1008373 9ket:D (3.46) BS04 ZN N/A GO:0000287 ... P9WGY7 39948061
    1008374 9ket:D (3.46) BS05 MG N/A GO:0000287 ... P9WGY7 39948061
    1008375 9ket:F (3.46) BS01 dna N/A GO:0000976 ... P9WGI1 39948061
    1008376 9ket:F (3.46) BS02 dna N/A GO:0000976 ... P9WGI1 39948061
    1008377 9ket:J (3.46) BS01 dna N/A GO:0000160 ... P71814 39948061
    1008378 9ket:J (3.46) BS02 dna N/A GO:0000160 ... P71814 39948061
    1008379 9ket:K (3.46) BS01 dna N/A GO:0000160 ... P71814 39948061
    1008380 9ket:K (3.46) BS02 dna N/A GO:0000160 ... P71814 39948061
    1008381 9keu:C (3.7) BS01 dna N/A GO:0000345 ... P9WGY9 39948061
    1008382 9keu:C (3.7) BS02 dna N/A GO:0000345 ... P9WGY9 39948061
    1008383 9keu:D (3.7) BS01 dna N/A GO:0000287 ... P9WGY7 39948061
    1008384 9keu:D (3.7) BS02 dna N/A GO:0000287 ... P9WGY7 39948061
    1008385 9keu:D (3.7) BS03 ZN N/A GO:0000287 ... P9WGY7 39948061
    1008386 9keu:D (3.7) BS04 MG N/A GO:0000287 ... P9WGY7 39948061
    1008387 9keu:F (3.7) BS01 dna N/A GO:0000976 ... P9WGI1 39948061
    1008388 9keu:F (3.7) BS02 dna N/A GO:0000976 ... P9WGI1 39948061
    1008389 9keu:I (3.7) BS01 dna N/A GO:0000156 ... P71814 39948061
    1008390 9keu:J (3.7) BS01 dna N/A GO:0000156 ... P71814 39948061
    1008391 9keu:J (3.7) BS02 dna N/A GO:0000156 ... P71814 39948061
    1008392 9keu:K (3.7) BS01 dna N/A GO:0000156 ... P71814 39948061
    1008393 9keu:M (3.7) BS01 dna N/A GO:0000156 ... P71814 39948061
    1008394 9keu:M (3.7) BS02 dna N/A GO:0000156 ... P71814 39948061
    1008395 9kev:A (3.31) BS01 dna N/A GO:0003677 ... P9WGZ1 39948061
    1008396 9kev:A (3.31) BS02 dna N/A GO:0003677 ... P9WGZ1 39948061
    1008397 9kev:C (3.31) BS01 dna N/A GO:0000345 ... P9WGY9 39948061
    1008398 9kev:C (3.31) BS02 dna N/A GO:0000345 ... P9WGY9 39948061
    1008399 9kev:D (3.31) BS01 dna N/A GO:0000287 ... P9WGY7 39948061
    1008400 9kev:D (3.31) BS02 dna N/A GO:0000287 ... P9WGY7 39948061

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).