SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1009201 9km0:k (2.78) BS02 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009202 9km0:k (2.78) BS03 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009203 9km0:k (2.78) BS04 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009204 9km0:n (2.78) BS01 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009205 9km0:n (2.78) BS02 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009206 9km0:n (2.78) BS03 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009207 9km0:n (2.78) BS04 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009208 9km0:p (2.78) BS01 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009209 9km0:p (2.78) BS02 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009210 9km0:p (2.78) BS03 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009211 9km0:p (2.78) BS04 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009212 9km0:q (2.78) BS01 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009213 9km0:q (2.78) BS02 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009214 9km0:q (2.78) BS03 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009215 9km0:q (2.78) BS04 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009216 9km0:r (2.78) BS01 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009217 9km0:r (2.78) BS02 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009218 9km0:r (2.78) BS03 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009219 9km0:r (2.78) BS04 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009220 9km0:s (2.78) BS01 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009221 9km0:s (2.78) BS02 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009222 9km0:s (2.78) BS03 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009223 9km0:t (2.78) BS01 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009224 9km0:t (2.78) BS02 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009225 9km0:t (2.78) BS03 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009226 9km0:v (2.78) BS01 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009227 9km0:v (2.78) BS02 BCL N/A GO:0005886 ... A8LQ14 40112203
    1009228 9km0:v (2.78) BS03 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009229 9km0:v (2.78) BS04 A1EFU N/A GO:0005886 ... A8LQ14 40112203
    1009230 9km1:A (2.68) BS01 A1EFZ N/A N/A Q9H8M2 41477332
    1009231 9km1:A (2.68) BS02 A1EFZ N/A N/A Q9H8M2 41477332
    1009232 9km1:B (2.68) BS01 A1EFZ N/A N/A Q9H8M2 41477332
    1009233 9km1:B (2.68) BS02 A1EFZ N/A N/A Q9H8M2 41477332
    1009234 9km3:A (2.9) BS01 CLR N/A GO:0005886 ... A0A7D9NK84 41284875
    1009235 9km3:A (2.9) BS02 GLY N/A GO:0005886 ... A0A7D9NK84 41284875
    1009236 9km4:A (3.2) BS01 DLY N/A N/A A0A7D9NK84 41284875
    1009237 9km5:A (3.5) BS01 A1EZ0 N/A GO:0005886 ... A0A7D9NK84 41284875
    1009238 9km5:A (3.5) BS02 CLR N/A GO:0005886 ... A0A7D9NK84 41284875
    1009239 9km6:A (2.00003) BS01 SFG N/A N/A A0A3R7FZU3 40761108
    1009240 9km6:B (2.00003) BS01 SFG N/A N/A A0A3R7FZU3 40761108
    1009241 9km7:A (2.8) BS01 A1EF1 N/A N/A A0A7D9NK84 41284875
    1009242 9km8:A (3.5) BS01 A1EF3 N/A N/A A0A7D9NK84 41284875
    1009243 9km8:A (3.5) BS02 CLR N/A N/A A0A7D9NK84 41284875
    1009244 9kmb:A (2.28) BS01 ZN N/A GO:0005515 ... Q16769 40368832
    1009245 9kmb:A (2.28) BS02 A1EFY N/A GO:0005515 ... Q16769 40368832
    1009246 9kmb:B (2.28) BS01 ZN N/A GO:0005515 ... Q16769 40368832
    1009247 9kmb:B (2.28) BS02 A1EFY N/A GO:0005515 ... Q16769 40368832
    1009248 9kmb:C (2.28) BS01 ZN N/A GO:0005515 ... Q16769 40368832
    1009249 9kmb:C (2.28) BS02 A1EFY N/A GO:0005515 ... Q16769 40368832
    1009250 9kmc:B (2.97) BS01 FUC N/A N/A P14784 41587986
    1009251 9kmd:A (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009252 9kmd:A (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009253 9kmd:A (2.99) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1009254 9kmd:B (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009255 9kmd:B (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009256 9kmd:B (2.99) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1009257 9kmd:C (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009258 9kmd:C (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009259 9kmd:C (2.99) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1009260 9kmd:D (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009261 9kmd:D (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009262 9kmd:D (2.99) BS03 MG N/A GO:0004176 ... P28737 N/A
    1009263 9kmd:D (2.99) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1009264 9kmd:E (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009265 9kmd:E (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009266 9kmd:E (2.99) BS03 MG N/A GO:0004176 ... P28737 N/A
    1009267 9kmd:E (2.99) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1009268 9kmd:F (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009269 9kmd:F (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009270 9kmd:F (2.99) BS03 MG N/A GO:0004176 ... P28737 N/A
    1009271 9kmd:F (2.99) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1009272 9kmd:G (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009273 9kmd:G (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009274 9kmd:G (2.99) BS03 MG N/A GO:0004176 ... P28737 N/A
    1009275 9kmd:G (2.99) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1009276 9kmd:H (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009277 9kmd:H (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009278 9kmd:H (2.99) BS03 MG N/A GO:0004176 ... P28737 N/A
    1009279 9kmd:H (2.99) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1009280 9kmd:I (2.99) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1009281 9kmd:I (2.99) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1009282 9kme:A (1.76) BS01 RET N/A GO:0016020 ... N/A 40406218
    1009283 9kme:B (1.76) BS01 RET N/A GO:0016020 ... N/A 40406218
    1009284 9kme:C (1.76) BS01 RET N/A GO:0016020 ... N/A 40406218
    1009285 9kme:D (1.76) BS01 RET N/A GO:0016020 ... N/A 40406218
    1009286 9kmf:A (1.4) BS01 CA N/A N/A N/A N/A
    1009287 9kmf:A (1.4) BS02 CA N/A N/A N/A N/A
    1009288 9kmf:B (1.4) BS01 CA N/A N/A N/A N/A
    1009289 9kmf:B (1.4) BS02 CA N/A N/A N/A N/A
    1009290 9kmm:A (3.3) BS01 IZC N/A GO:0005283 ... P31641 40601627
    1009291 9kmn:A (2.47) BS01 A1EFW N/A GO:0000017 ... P31639 40759649
    1009292 9kmr:A (2.98) BS01 ADP N/A GO:0001764 ... P07900 N/A
    1009293 9kmr:B (2.98) BS01 ADP N/A GO:0001764 ... P07900 N/A
    1009294 9kmt:A (2.81) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009295 9kmt:B (2.81) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009296 9kmt:C (2.81) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009297 9kmt:D (2.81) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009298 9kmt:E (2.81) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009299 9kmt:F (2.81) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009300 9kmt:G (2.81) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009301 9kmt:H (2.81) BS01 rna N/A GO:0002181 ... P62081 N/A
    1009302 9kmt:I (2.81) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009303 9kmt:J (2.81) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009304 9kmt:K (2.81) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009305 9kmt:L (2.81) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009306 9kmt:M (2.81) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009307 9kmt:N (2.81) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009308 9kmt:O (2.81) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009309 9kmt:P (2.81) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009310 9kmt:Q (2.81) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009311 9kmt:R (2.81) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009312 9kmt:S (2.81) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009313 9kmt:T (2.81) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009314 9kmt:U (2.81) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009315 9kmt:W (2.81) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009316 9kmt:X (2.81) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009317 9kmt:Y (2.81) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009318 9kmt:Z (2.81) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009319 9kmt:a (2.81) BS01 rna N/A N/A P62854 N/A
    1009320 9kmt:b (2.81) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009321 9kmt:c (2.81) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009322 9kmt:d (2.81) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009323 9kmt:e (2.81) BS01 rna N/A N/A P62861 N/A
    1009324 9kmt:f (2.81) BS01 rna N/A N/A P62979 N/A
    1009325 9kmt:g (2.81) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009326 9kmt:n (2.81) BS01 rna N/A N/A N/A N/A
    1009327 9kmu:A (2.87) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009328 9kmu:B (2.87) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009329 9kmu:C (2.87) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009330 9kmu:D (2.87) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009331 9kmu:E (2.87) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009332 9kmu:F (2.87) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009333 9kmu:G (2.87) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009334 9kmu:H (2.87) BS01 rna N/A GO:0002181 ... P62081 N/A
    1009335 9kmu:I (2.87) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009336 9kmu:J (2.87) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009337 9kmu:K (2.87) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009338 9kmu:L (2.87) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009339 9kmu:M (2.87) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009340 9kmu:N (2.87) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009341 9kmu:O (2.87) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009342 9kmu:P (2.87) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009343 9kmu:Q (2.87) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009344 9kmu:R (2.87) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009345 9kmu:S (2.87) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009346 9kmu:T (2.87) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009347 9kmu:U (2.87) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009348 9kmu:W (2.87) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009349 9kmu:X (2.87) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009350 9kmu:Y (2.87) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009351 9kmu:Z (2.87) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009352 9kmu:a (2.87) BS01 rna N/A N/A P62854 N/A
    1009353 9kmu:b (2.87) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009354 9kmu:c (2.87) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009355 9kmu:d (2.87) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009356 9kmu:e (2.87) BS01 rna N/A N/A P62861 N/A
    1009357 9kmu:f (2.87) BS01 rna N/A N/A P62979 N/A
    1009358 9kmu:g (2.87) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009359 9kmu:n (2.87) BS01 rna N/A N/A N/A N/A
    1009360 9kmv:A (2.65) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009361 9kmv:B (2.65) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009362 9kmv:C (2.65) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009363 9kmv:D (2.65) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009364 9kmv:E (2.65) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009365 9kmv:F (2.65) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009366 9kmv:G (2.65) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009367 9kmv:H (2.65) BS01 rna N/A GO:0002181 ... P62081 N/A
    1009368 9kmv:I (2.65) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009369 9kmv:J (2.65) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009370 9kmv:K (2.65) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009371 9kmv:L (2.65) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009372 9kmv:M (2.65) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009373 9kmv:N (2.65) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009374 9kmv:O (2.65) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009375 9kmv:P (2.65) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009376 9kmv:Q (2.65) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009377 9kmv:R (2.65) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009378 9kmv:S (2.65) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009379 9kmv:T (2.65) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009380 9kmv:U (2.65) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009381 9kmv:W (2.65) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009382 9kmv:X (2.65) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009383 9kmv:Y (2.65) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009384 9kmv:Z (2.65) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009385 9kmv:a (2.65) BS01 rna N/A N/A P62854 N/A
    1009386 9kmv:b (2.65) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009387 9kmv:c (2.65) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009388 9kmv:d (2.65) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009389 9kmv:e (2.65) BS01 rna N/A N/A P62861 N/A
    1009390 9kmv:f (2.65) BS01 rna N/A N/A P62979 N/A
    1009391 9kmv:g (2.65) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009392 9kmv:n (2.65) BS01 rna N/A N/A N/A N/A
    1009393 9kmw:A (2.73) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009394 9kmw:B (2.73) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009395 9kmw:C (2.73) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009396 9kmw:D (2.73) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009397 9kmw:E (2.73) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009398 9kmw:F (2.73) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009399 9kmw:G (2.73) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009400 9kmw:H (2.73) BS01 rna N/A GO:0002181 ... P62081 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).