SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1009401 9kmw:I (2.73) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009402 9kmw:J (2.73) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009403 9kmw:K (2.73) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009404 9kmw:L (2.73) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009405 9kmw:M (2.73) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009406 9kmw:N (2.73) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009407 9kmw:O (2.73) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009408 9kmw:P (2.73) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009409 9kmw:Q (2.73) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009410 9kmw:R (2.73) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009411 9kmw:S (2.73) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009412 9kmw:T (2.73) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009413 9kmw:U (2.73) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009414 9kmw:W (2.73) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009415 9kmw:X (2.73) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009416 9kmw:Y (2.73) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009417 9kmw:Z (2.73) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009418 9kmw:a (2.73) BS01 rna N/A N/A P62854 N/A
    1009419 9kmw:b (2.73) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009420 9kmw:c (2.73) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009421 9kmw:d (2.73) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009422 9kmw:e (2.73) BS01 rna N/A N/A P62861 N/A
    1009423 9kmw:f (2.73) BS01 rna N/A N/A P62979 N/A
    1009424 9kmw:g (2.73) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009425 9kmw:n (2.73) BS01 rna N/A N/A N/A N/A
    1009426 9kmx:A (2.89) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009427 9kmx:B (2.89) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009428 9kmx:C (2.89) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009429 9kmx:C (2.89) BS02 peptide N/A GO:0002181 ... P15880 N/A
    1009430 9kmx:D (2.89) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009431 9kmx:D (2.89) BS02 peptide N/A GO:0001228 ... P23396 N/A
    1009432 9kmx:E (2.89) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009433 9kmx:F (2.89) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009434 9kmx:G (2.89) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009435 9kmx:H (2.89) BS01 rna N/A GO:0002181 ... P62081 N/A
    1009436 9kmx:I (2.89) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009437 9kmx:J (2.89) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009438 9kmx:K (2.89) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009439 9kmx:L (2.89) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009440 9kmx:M (2.89) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009441 9kmx:N (2.89) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009442 9kmx:O (2.89) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009443 9kmx:P (2.89) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009444 9kmx:Q (2.89) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009445 9kmx:R (2.89) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009446 9kmx:S (2.89) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009447 9kmx:T (2.89) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009448 9kmx:U (2.89) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009449 9kmx:W (2.89) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009450 9kmx:X (2.89) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009451 9kmx:Y (2.89) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009452 9kmx:Z (2.89) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009453 9kmx:a (2.89) BS01 rna N/A N/A P62854 N/A
    1009454 9kmx:b (2.89) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009455 9kmx:c (2.89) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009456 9kmx:d (2.89) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009457 9kmx:e (2.89) BS01 rna N/A N/A P62861 N/A
    1009458 9kmx:f (2.89) BS01 rna N/A N/A P62979 N/A
    1009459 9kmx:g (2.89) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009460 9kmy:A (2.7) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009461 9kmy:B (2.7) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009462 9kmy:C (2.7) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009463 9kmy:C (2.7) BS02 peptide N/A GO:0002181 ... P15880 N/A
    1009464 9kmy:D (2.7) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009465 9kmy:D (2.7) BS02 peptide N/A GO:0001228 ... P23396 N/A
    1009466 9kmy:E (2.7) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009467 9kmy:F (2.7) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009468 9kmy:G (2.7) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009469 9kmy:H (2.7) BS01 rna N/A GO:0002181 ... P62081 N/A
    1009470 9kmy:I (2.7) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009471 9kmy:J (2.7) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009472 9kmy:K (2.7) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009473 9kmy:L (2.7) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009474 9kmy:M (2.7) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009475 9kmy:N (2.7) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009476 9kmy:O (2.7) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009477 9kmy:P (2.7) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009478 9kmy:Q (2.7) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009479 9kmy:R (2.7) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009480 9kmy:S (2.7) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009481 9kmy:T (2.7) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009482 9kmy:U (2.7) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009483 9kmy:W (2.7) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009484 9kmy:X (2.7) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009485 9kmy:Y (2.7) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009486 9kmy:Z (2.7) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009487 9kmy:a (2.7) BS01 rna N/A N/A P62854 N/A
    1009488 9kmy:b (2.7) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009489 9kmy:c (2.7) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009490 9kmy:d (2.7) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009491 9kmy:e (2.7) BS01 rna N/A N/A P62861 N/A
    1009492 9kmy:f (2.7) BS01 rna N/A N/A P62979 N/A
    1009493 9kmy:g (2.7) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009494 9kmz:A (2.78) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009495 9kmz:B (2.78) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009496 9kmz:C (2.78) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009497 9kmz:C (2.78) BS02 peptide N/A GO:0002181 ... P15880 N/A
    1009498 9kmz:D (2.78) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009499 9kmz:D (2.78) BS02 peptide N/A GO:0001228 ... P23396 N/A
    1009500 9kmz:E (2.78) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009501 9kmz:F (2.78) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009502 9kmz:G (2.78) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009503 9kmz:H (2.78) BS01 rna N/A GO:0002181 ... P62081 N/A
    1009504 9kmz:I (2.78) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009505 9kmz:J (2.78) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009506 9kmz:K (2.78) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009507 9kmz:L (2.78) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009508 9kmz:M (2.78) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009509 9kmz:N (2.78) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009510 9kmz:O (2.78) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009511 9kmz:P (2.78) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009512 9kmz:Q (2.78) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009513 9kmz:R (2.78) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009514 9kmz:S (2.78) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009515 9kmz:T (2.78) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009516 9kmz:U (2.78) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009517 9kmz:W (2.78) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009518 9kmz:X (2.78) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009519 9kmz:Y (2.78) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009520 9kmz:Z (2.78) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009521 9kmz:a (2.78) BS01 rna N/A N/A P62854 N/A
    1009522 9kmz:b (2.78) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009523 9kmz:c (2.78) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009524 9kmz:d (2.78) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009525 9kmz:e (2.78) BS01 rna N/A N/A P62861 N/A
    1009526 9kmz:f (2.78) BS01 rna N/A N/A P62979 N/A
    1009527 9kmz:g (2.78) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009528 9kn0:A (2.65) BS01 rna N/A GO:0000028 ... P08865 N/A
    1009529 9kn0:B (2.65) BS01 rna N/A GO:0002181 ... P61247 N/A
    1009530 9kn0:C (2.65) BS01 rna N/A GO:0002181 ... P15880 N/A
    1009531 9kn0:C (2.65) BS02 peptide N/A GO:0002181 ... P15880 N/A
    1009532 9kn0:D (2.65) BS01 rna N/A GO:0001228 ... P23396 N/A
    1009533 9kn0:D (2.65) BS02 peptide N/A GO:0001228 ... P23396 N/A
    1009534 9kn0:E (2.65) BS01 rna N/A GO:0002181 ... P62701 N/A
    1009535 9kn0:F (2.65) BS01 rna N/A GO:0002181 ... P46782 N/A
    1009536 9kn0:G (2.65) BS01 rna N/A GO:0002181 ... P62753 N/A
    1009537 9kn0:H (2.65) BS01 rna N/A GO:0002181 ... P62081 N/A
    1009538 9kn0:I (2.65) BS01 rna N/A GO:0002181 ... P62241 N/A
    1009539 9kn0:J (2.65) BS01 rna N/A GO:0002181 ... P46781 N/A
    1009540 9kn0:K (2.65) BS01 rna N/A GO:0002181 ... P46783 N/A
    1009541 9kn0:L (2.65) BS01 rna N/A GO:0002181 ... P62280 N/A
    1009542 9kn0:M (2.65) BS01 rna N/A GO:0002181 ... P25398 N/A
    1009543 9kn0:N (2.65) BS01 rna N/A GO:0000462 ... P62277 N/A
    1009544 9kn0:O (2.65) BS01 rna N/A GO:0000028 ... P62263 N/A
    1009545 9kn0:P (2.65) BS01 rna N/A GO:0000056 ... P62841 N/A
    1009546 9kn0:Q (2.65) BS01 rna N/A GO:0000462 ... P62249 N/A
    1009547 9kn0:R (2.65) BS01 rna N/A GO:0002181 ... P08708 N/A
    1009548 9kn0:S (2.65) BS01 rna N/A GO:0002181 ... P62269 N/A
    1009549 9kn0:T (2.65) BS01 rna N/A GO:0000028 ... P39019 N/A
    1009550 9kn0:U (2.65) BS01 rna N/A GO:0002181 ... P60866 N/A
    1009551 9kn0:W (2.65) BS01 rna N/A GO:0002181 ... P62244 N/A
    1009552 9kn0:X (2.65) BS01 rna N/A GO:0002181 ... P62266 N/A
    1009553 9kn0:Y (2.65) BS01 rna N/A GO:0002181 ... P62847 N/A
    1009554 9kn0:Z (2.65) BS01 rna N/A GO:0002181 ... P62851 N/A
    1009555 9kn0:a (2.65) BS01 rna N/A N/A P62854 N/A
    1009556 9kn0:b (2.65) BS01 rna N/A GO:0002181 ... P42677 N/A
    1009557 9kn0:c (2.65) BS01 rna N/A GO:0000028 ... P62857 N/A
    1009558 9kn0:d (2.65) BS01 rna N/A GO:0002181 ... P62273 N/A
    1009559 9kn0:e (2.65) BS01 rna N/A N/A P62861 N/A
    1009560 9kn0:e (2.65) BS02 peptide N/A N/A P62861 N/A
    1009561 9kn0:f (2.65) BS01 rna N/A N/A P62979 N/A
    1009562 9kn0:g (2.65) BS01 rna N/A GO:0001891 ... P63244 N/A
    1009563 9kn1:A (2.12) BS01 U N/A GO:0003723 ... P0DTC9 39848104
    1009564 9kn2:A (2.04) BS01 RDF N/A GO:0004222 ... Q7MXL5 39709774
    1009565 9kn2:A (2.04) BS02 ZN N/A GO:0004222 ... Q7MXL5 39709774
    1009566 9kn3:A (3.27) BS01 peptide N/A GO:0005515 ... P31554 40674207
    1009567 9kn5:1A (3.2) BS01 rna N/A GO:0003723 ... P47813 41337487
    1009568 9kn5:3a (3.2) BS01 rna N/A GO:0001732 ... Q14152 41337487
    1009569 9kn5:3c (3.2) BS01 rna N/A GO:0001732 ... Q99613 41337487
    1009570 9kn5:SA (3.2) BS01 rna N/A GO:0000028 ... P08865 41337487
    1009571 9kn5:SB (3.2) BS01 rna N/A GO:0002181 ... P61247 41337487
    1009572 9kn5:SC (3.2) BS01 rna N/A GO:0002181 ... P15880 41337487
    1009573 9kn5:SD (3.2) BS01 rna N/A GO:0001228 ... P23396 41337487
    1009574 9kn5:SE (3.2) BS01 rna N/A GO:0002181 ... P62701 41337487
    1009575 9kn5:SF (3.2) BS01 rna N/A GO:0002181 ... P46782 41337487
    1009576 9kn5:SF (3.2) BS02 rna N/A GO:0002181 ... P46782 41337487
    1009577 9kn5:SG (3.2) BS01 rna N/A GO:0002181 ... P62753 41337487
    1009578 9kn5:SH (3.2) BS01 rna N/A GO:0002181 ... P62081 41337487
    1009579 9kn5:SI (3.2) BS01 rna N/A GO:0002181 ... P62241 41337487
    1009580 9kn5:SJ (3.2) BS01 rna N/A GO:0002181 ... P46781 41337487
    1009581 9kn5:SK (3.2) BS01 rna N/A GO:0002181 ... P46783 41337487
    1009582 9kn5:SL (3.2) BS01 rna N/A GO:0002181 ... P62280 41337487
    1009583 9kn5:SN (3.2) BS01 rna N/A GO:0000462 ... P62277 41337487
    1009584 9kn5:SO (3.2) BS01 rna N/A GO:0000028 ... P62263 41337487
    1009585 9kn5:SO (3.2) BS02 rna N/A GO:0000028 ... P62263 41337487
    1009586 9kn5:SP (3.2) BS01 rna N/A GO:0000056 ... P62841 41337487
    1009587 9kn5:SQ (3.2) BS01 rna N/A GO:0000462 ... P62249 41337487
    1009588 9kn5:SR (3.2) BS01 rna N/A GO:0002181 ... P08708 41337487
    1009589 9kn5:SS (3.2) BS01 rna N/A GO:0002181 ... P62269 41337487
    1009590 9kn5:ST (3.2) BS01 rna N/A GO:0000028 ... P39019 41337487
    1009591 9kn5:SU (3.2) BS01 rna N/A GO:0002181 ... P60866 41337487
    1009592 9kn5:SW (3.2) BS01 rna N/A GO:0002181 ... P62244 41337487
    1009593 9kn5:SX (3.2) BS01 rna N/A GO:0002181 ... P62266 41337487
    1009594 9kn5:SY (3.2) BS01 rna N/A GO:0002181 ... P62847 41337487
    1009595 9kn5:SZ (3.2) BS01 rna N/A GO:0002181 ... P62851 41337487
    1009596 9kn5:SZ (3.2) BS02 rna N/A GO:0002181 ... P62851 41337487
    1009597 9kn5:Sa (3.2) BS01 rna N/A GO:0002181 ... P62854 41337487
    1009598 9kn5:Sa (3.2) BS02 rna N/A GO:0002181 ... P62854 41337487
    1009599 9kn5:Sa (3.2) BS03 ZN N/A GO:0002181 ... P62854 41337487
    1009600 9kn5:Sb (3.2) BS01 rna N/A GO:0002181 ... P42677 41337487
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).