SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1009601 9kn5:Sb (3.2) BS02 rna N/A GO:0002181 ... P42677 41337487
    1009602 9kn5:Sc (3.2) BS01 rna N/A GO:0000028 ... P62857 41337487
    1009603 9kn5:Sc (3.2) BS02 rna N/A GO:0000028 ... P62857 41337487
    1009604 9kn5:Sd (3.2) BS01 rna N/A GO:0002181 ... P62273 41337487
    1009605 9kn5:Se (3.2) BS01 rna N/A N/A P62861 41337487
    1009606 9kn5:Sf (3.2) BS01 rna N/A GO:0002181 ... P25398 41337487
    1009607 9kn5:Sg (3.2) BS01 rna N/A GO:0001891 ... P63244 41337487
    1009608 9kn5:sh (3.2) BS01 rna N/A GO:0002181 ... P62979 41337487
    1009609 9kn5:sh (3.2) BS02 ZN N/A GO:0002181 ... P62979 41337487
    1009610 9kn6:1A (3.3) BS01 rna N/A GO:0003723 ... P47813 41337487
    1009611 9kn6:1A (3.3) BS02 rna N/A GO:0003723 ... P47813 41337487
    1009612 9kn6:3a (3.3) BS01 rna N/A GO:0001732 ... Q14152 41337487
    1009613 9kn6:3c (3.3) BS01 rna N/A GO:0001732 ... Q99613 41337487
    1009614 9kn6:5B (3.3) BS01 rna N/A N/A O60841 41337487
    1009615 9kn6:5B (3.3) BS02 rna N/A N/A O60841 41337487
    1009616 9kn6:5B (3.3) BS03 MG N/A N/A O60841 41337487
    1009617 9kn6:5B (3.3) BS04 GTP N/A N/A O60841 41337487
    1009618 9kn6:SA (3.3) BS01 rna N/A GO:0000028 ... P08865 41337487
    1009619 9kn6:SB (3.3) BS01 rna N/A GO:0002181 ... P61247 41337487
    1009620 9kn6:SC (3.3) BS01 rna N/A GO:0002181 ... P15880 41337487
    1009621 9kn6:SD (3.3) BS01 rna N/A GO:0001228 ... P23396 41337487
    1009622 9kn6:SE (3.3) BS01 rna N/A GO:0002181 ... P62701 41337487
    1009623 9kn6:SF (3.3) BS01 rna N/A GO:0002181 ... P46782 41337487
    1009624 9kn6:SF (3.3) BS02 rna N/A GO:0002181 ... P46782 41337487
    1009625 9kn6:SG (3.3) BS01 rna N/A GO:0002181 ... P62753 41337487
    1009626 9kn6:SH (3.3) BS01 rna N/A GO:0002181 ... P62081 41337487
    1009627 9kn6:SI (3.3) BS01 rna N/A GO:0002181 ... P62241 41337487
    1009628 9kn6:SJ (3.3) BS01 rna N/A GO:0002181 ... P46781 41337487
    1009629 9kn6:SK (3.3) BS01 rna N/A GO:0002181 ... P46783 41337487
    1009630 9kn6:SL (3.3) BS01 rna N/A GO:0002181 ... P62280 41337487
    1009631 9kn6:SN (3.3) BS01 rna N/A GO:0000462 ... P62277 41337487
    1009632 9kn6:SO (3.3) BS01 rna N/A GO:0000028 ... P62263 41337487
    1009633 9kn6:SO (3.3) BS02 rna N/A GO:0000028 ... P62263 41337487
    1009634 9kn6:SP (3.3) BS01 rna N/A GO:0000056 ... P62841 41337487
    1009635 9kn6:SQ (3.3) BS01 rna N/A GO:0000462 ... P62249 41337487
    1009636 9kn6:SR (3.3) BS01 rna N/A GO:0002181 ... P08708 41337487
    1009637 9kn6:SS (3.3) BS01 rna N/A GO:0002181 ... P62269 41337487
    1009638 9kn6:ST (3.3) BS01 rna N/A GO:0000028 ... P39019 41337487
    1009639 9kn6:SU (3.3) BS01 rna N/A GO:0002181 ... P60866 41337487
    1009640 9kn6:SW (3.3) BS01 rna N/A GO:0002181 ... P62244 41337487
    1009641 9kn6:SX (3.3) BS01 rna N/A GO:0002181 ... P62266 41337487
    1009642 9kn6:SY (3.3) BS01 rna N/A GO:0002181 ... P62847 41337487
    1009643 9kn6:SZ (3.3) BS01 rna N/A GO:0002181 ... P62851 41337487
    1009644 9kn6:SZ (3.3) BS02 rna N/A GO:0002181 ... P62851 41337487
    1009645 9kn6:Sa (3.3) BS01 rna N/A GO:0002181 ... P62854 41337487
    1009646 9kn6:Sa (3.3) BS02 rna N/A GO:0002181 ... P62854 41337487
    1009647 9kn6:Sa (3.3) BS03 ZN N/A GO:0002181 ... P62854 41337487
    1009648 9kn6:Sb (3.3) BS01 rna N/A GO:0002181 ... P42677 41337487
    1009649 9kn6:Sb (3.3) BS02 rna N/A GO:0002181 ... P42677 41337487
    1009650 9kn6:Sc (3.3) BS01 rna N/A GO:0000028 ... P62857 41337487
    1009651 9kn6:Sc (3.3) BS02 rna N/A GO:0000028 ... P62857 41337487
    1009652 9kn6:Sd (3.3) BS01 rna N/A GO:0002181 ... P62273 41337487
    1009653 9kn6:Se (3.3) BS01 rna N/A N/A P62861 41337487
    1009654 9kn6:Sf (3.3) BS01 rna N/A GO:0002181 ... P25398 41337487
    1009655 9kn6:Sg (3.3) BS01 rna N/A GO:0001891 ... P63244 41337487
    1009656 9kn6:sh (3.3) BS01 rna N/A GO:0002181 ... P62979 41337487
    1009657 9kn6:sh (3.3) BS02 ZN N/A GO:0002181 ... P62979 41337487
    1009658 9kn8:A (1.64) BS01 A1L54 N/A GO:0005506 ... P02791 39973762
    1009659 9kn9:A (2.0) BS01 A1EF6 N/A N/A O96028 41264880
    1009660 9kn9:B (2.0) BS01 A1EF6 N/A N/A O96028 41264880
    1009661 9kna:A (2.92) BS01 6Y3 N/A N/A O96028 41264880
    1009662 9kna:B (2.92) BS01 6Y3 N/A N/A O96028 41264880
    1009663 9knb:A (1.84) BS01 A1EF7 N/A N/A O96028 41264880
    1009664 9knc:A (1.9) BS01 peptide N/A N/A P62508 40200124
    1009665 9knc:A (1.9) BS02 A1EF8 N/A N/A P62508 40200124
    1009666 9knd:A (1.52) BS01 peptide N/A N/A P62508 40200124
    1009667 9kne:A (1.8) BS01 peptide N/A N/A P62508 40200124
    1009668 9kne:A (1.8) BS02 2HU N/A N/A P62508 40200124
    1009669 9knf:A (1.62) BS01 peptide N/A N/A P62508 40200124
    1009670 9knf:A (1.62) BS02 A1EGB N/A N/A P62508 40200124
    1009671 9kng:A (1.5) BS01 peptide N/A N/A P62508 40200124
    1009672 9kng:A (1.5) BS02 A1EGD N/A N/A P62508 40200124
    1009673 9knh:A (2.9) BS01 A1EF4 N/A GO:0001659 ... Q9C0B1 40579742
    1009674 9knh:A (2.9) BS02 FE N/A GO:0001659 ... Q9C0B1 40579742
    1009675 9kni:A (2.63) BS01 AKG N/A GO:0001659 ... Q9C0B1 40022879
    1009676 9kni:A (2.63) BS02 A1EF5 N/A GO:0001659 ... Q9C0B1 40022879
    1009677 9knp:A (1.94) BS01 NAD N/A GO:0004022 ... O58517 N/A
    1009678 9knp:A (1.94) BS02 1BO N/A GO:0004022 ... O58517 N/A
    1009679 9knp:B (1.94) BS01 NAD N/A GO:0004022 ... O58517 N/A
    1009680 9knp:B (1.94) BS02 1BO N/A GO:0004022 ... O58517 N/A
    1009681 9knq:A (3.0) BS01 ZN N/A GO:0000166 ... Q9WMB3 40628260
    1009682 9knt:A (3.4) BS01 peptide N/A GO:0000166 ... Q9WMB3 40628260
    1009683 9knt:A (3.4) BS02 ZN N/A GO:0000166 ... Q9WMB3 40628260
    1009684 9knt:A (3.4) BS03 ZN N/A GO:0000166 ... Q9WMB3 40628260
    1009685 9knt:A (3.4) BS04 A1EF9 N/A GO:0000166 ... Q9WMB3 40628260
    1009686 9knt:C (3.4) BS01 peptide N/A GO:0001172 ... Q9WMB4 40628260
    1009687 9knt:D (3.4) BS01 peptide N/A GO:0001172 ... Q9WMB4 40628260
    1009688 9knv:A (3.3) BS01 peptide N/A GO:0000166 ... Q9WMB3 40628260
    1009689 9knv:A (3.3) BS02 ZN N/A GO:0000166 ... Q9WMB3 40628260
    1009690 9knv:A (3.3) BS03 A1EGA N/A GO:0000166 ... Q9WMB3 40628260
    1009691 9knv:C (3.3) BS01 peptide N/A GO:0001172 ... Q9WMB4 40628260
    1009692 9knv:D (3.3) BS01 peptide N/A GO:0001172 ... Q9WMB4 40628260
    1009693 9knz:A (3.0) BS01 A1EF9 N/A GO:0000166 ... Q997F0 40628260
    1009694 9knz:A (3.0) BS02 ZN N/A GO:0000166 ... Q997F0 40628260
    1009695 9knz:A (3.0) BS03 ZN N/A GO:0000166 ... Q997F0 40628260
    1009696 9ko3:A (1.95) BS01 SAH N/A N/A A9CKE9 N/A
    1009697 9ko3:B (1.95) BS01 SAH N/A N/A A9CKE9 N/A
    1009698 9ko3:C (1.95) BS01 SAH N/A N/A A9CKE9 N/A
    1009699 9ko3:D (1.95) BS01 SAH N/A N/A A9CKE9 N/A
    1009700 9ko5:A (2.04) BS01 MTA N/A N/A A9CKE9 N/A
    1009701 9ko5:B (2.04) BS01 MTA N/A N/A A9CKE9 N/A
    1009702 9ko5:C (2.04) BS01 MTA N/A N/A A9CKE9 N/A
    1009703 9ko5:D (2.04) BS01 MTA N/A N/A A9CKE9 N/A
    1009704 9ko7:A (3.27) BS01 FUC N/A N/A A0A5J6CU64 N/A
    1009705 9ko9:A (2.7) BS01 rna N/A N/A A0ABF7PQ28 N/A
    1009706 9kod:A (2.95) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009707 9kod:A (2.95) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009708 9kod:B (2.95) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009709 9kod:B (2.95) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009710 9kod:C (2.95) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009711 9kod:C (2.95) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009712 9kod:D (2.95) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009713 9kod:D (2.95) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1009714 9koj:A (1.445) BS01 MN N/A N/A A0A317KV93 N/A
    1009715 9koj:B (1.445) BS01 MN N/A N/A A0A317KV93 N/A
    1009716 9kok:A (2.4) BS01 NAD N/A GO:0004030 ... Q9I2C4 39642707
    1009717 9kok:B (2.4) BS01 NAD N/A GO:0004030 ... Q9I2C4 39642707
    1009718 9kol:A (2.1) BS01 CU N/A GO:0005507 ... Q9XAL8 N/A
    1009719 9koo:A (2.7) BS01 4XX N/A N/A G3XD24 N/A
    1009720 9koo:B (2.7) BS01 4XX N/A N/A G3XD24 N/A
    1009721 9kop:A (1.99) BS01 CA N/A GO:0003723 ... N/A 40464688
    1009722 9koq:A (1.96) BS01 MN N/A GO:0004065 ... I3U6E8 40778759
    1009723 9koq:B (1.96) BS01 MN N/A GO:0004065 ... I3U6E8 40778759
    1009724 9kor:A (2.8) BS01 rna N/A N/A A0ABF7PQ28 N/A
    1009725 9kor:A (2.8) BS02 dna N/A N/A A0ABF7PQ28 N/A
    1009726 9kor:A (2.8) BS03 dna N/A N/A A0ABF7PQ28 N/A
    1009727 9kor:A (2.8) BS04 MG N/A N/A A0ABF7PQ28 N/A
    1009728 9kou:A (3.4) BS01 PO4 N/A GO:0005315 ... Q94DB8 41005295
    1009729 9kov:A (2.56) BS01 ZN N/A N/A A0A846MQ93 40318335
    1009730 9kov:B (2.56) BS01 ZN N/A N/A A0A846MQ93 40318335
    1009731 9kox:A (4.43) BS01 ADP N/A GO:0001764 ... P07900 N/A
    1009732 9kox:B (4.43) BS01 ADP N/A GO:0001764 ... P07900 N/A
    1009733 9koy:A (2.9) BS01 CO N/A GO:0003868 ... Q6H4V1 40495343
    1009734 9koy:A (2.9) BS02 A1L59 N/A GO:0003868 ... Q6H4V1 40495343
    1009735 9koy:A (2.9) BS03 CO N/A GO:0003868 ... Q6H4V1 40495343
    1009736 9koy:B (2.9) BS01 CO N/A GO:0003868 ... Q6H4V1 40495343
    1009737 9koy:B (2.9) BS02 A1L59 N/A GO:0003868 ... Q6H4V1 40495343
    1009738 9koy:B (2.9) BS03 CO N/A GO:0003868 ... Q6H4V1 40495343
    1009739 9koz:A (2.15) BS01 CO N/A GO:0003868 ... P93836 40495343
    1009740 9koz:A (2.15) BS02 A1L59 N/A GO:0003868 ... P93836 40495343
    1009741 9koz:B (2.15) BS01 CO N/A GO:0003868 ... P93836 40495343
    1009742 9koz:B (2.15) BS02 A1L59 N/A GO:0003868 ... P93836 40495343
    1009743 9koz:C (2.15) BS01 CO N/A GO:0003868 ... P93836 40495343
    1009744 9koz:C (2.15) BS02 A1L59 N/A GO:0003868 ... P93836 40495343
    1009745 9koz:D (2.15) BS01 CO N/A GO:0003868 ... P93836 40495343
    1009746 9koz:D (2.15) BS02 A1L59 N/A GO:0003868 ... P93836 40495343
    1009747 9kp0:A (2.0) BS01 CO N/A GO:0003868 ... Q6H4V1 40495343
    1009748 9kp0:A (2.0) BS02 ZN N/A GO:0003868 ... Q6H4V1 40495343
    1009749 9kp0:B (2.0) BS01 CO N/A GO:0003868 ... Q6H4V1 40495343
    1009750 9kp0:B (2.0) BS02 ZN N/A GO:0003868 ... Q6H4V1 40495343
    1009751 9kp2:A (1.5) BS01 A1L52 N/A GO:0005506 ... P02791 39973762
    1009752 9kp3:B (2.74) BS01 4XX N/A N/A Q9I0I4 N/A
    1009753 9kp4:A (3.08) BS01 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009754 9kp4:A (3.08) BS02 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009755 9kp4:B (3.08) BS01 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009756 9kp4:B (3.08) BS02 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009757 9kp4:C (3.08) BS01 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009758 9kp4:C (3.08) BS02 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009759 9kp4:D (3.08) BS01 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009760 9kp4:D (3.08) BS02 GLC N/A N/A P0AEX9
    Q8WTX7
    41506264
    1009761 9kp6:A (3.18) BS01 CA N/A GO:0005254 ... O76090 40043778
    1009762 9kp6:B (3.18) BS01 CA N/A GO:0005254 ... O76090 40043778
    1009763 9kp6:C (3.18) BS01 CA N/A GO:0005254 ... O76090 40043778
    1009764 9kp6:D (3.18) BS01 CA N/A GO:0005254 ... O76090 40043778
    1009765 9kp6:E (3.18) BS01 CA N/A GO:0005254 ... O76090 40043778
    1009766 9kp7:A (1.5) BS01 A1L52 N/A GO:0005506 ... P02791 39973762
    1009767 9kp8:A (1.179) BS01 FAD N/A N/A A0AA49QBA5
    Q2UG11
    N/A
    1009768 9kp9:A (2.13) BS01 NDP N/A GO:0008299 ... O96693 39811140
    1009769 9kp9:A (2.13) BS02 MN N/A GO:0008299 ... O96693 39811140
    1009770 9kp9:A (2.13) BS03 A1L6A N/A GO:0008299 ... O96693 39811140
    1009771 9kpd:R (2.84) BS01 SA0 N/A GO:0001580 ... Q9NYV7 40261795
    1009772 9kpe:R (3.35) BS01 SA0 N/A GO:0001580 ... Q9NYV7 40261795
    1009773 9kpf:R (3.15) BS01 SA0 N/A GO:0001580 ... Q9NYV7 40261795
    1009774 9kpg:A (1.85) BS01 ARG N/A N/A N/A 41506264
    1009775 9kpg:C (1.85) BS01 ARG N/A N/A N/A 41506264
    1009776 9kpi:A (2.4) BS01 A1EGG N/A GO:0000287 ... P34913 40227865
    1009777 9kpi:A (2.4) BS02 MG N/A GO:0000287 ... P34913 40227865
    1009778 9kpj:A (2.01) BS01 IND N/A N/A N/A 41033314
    1009779 9kpl:A (1.8) BS01 GLC N/A N/A A0A3B5KEF3 40119899
    1009780 9kpl:A (1.8) BS02 BGC N/A N/A A0A3B5KEF3 40119899
    1009781 9kpl:A (1.8) BS03 CA N/A N/A A0A3B5KEF3 40119899
    1009782 9kpl:A (1.8) BS04 CA N/A N/A A0A3B5KEF3 40119899
    1009783 9kpl:E (1.8) BS01 GLC N/A N/A A0A3B5KEF3 40119899
    1009784 9kpl:E (1.8) BS02 BGC N/A N/A A0A3B5KEF3 40119899
    1009785 9kpl:E (1.8) BS03 CA N/A N/A A0A3B5KEF3 40119899
    1009786 9kpl:E (1.8) BS04 CA N/A N/A A0A3B5KEF3 40119899
    1009787 9kpm:A (1.41) BS01 GDP N/A GO:0003924 ... P01116 39875337
    1009788 9kpm:A (1.41) BS02 A1L6C N/A GO:0003924 ... P01116 39875337
    1009789 9kpn:A (1.29) BS01 GDP N/A GO:0003924 ... P01116 39875337
    1009790 9kpn:A (1.29) BS02 A1L6B N/A GO:0003924 ... P01116 39875337
    1009791 9kpn:B (1.29) BS01 GDP N/A GO:0003924 ... P01116 39875337
    1009792 9kpn:B (1.29) BS02 A1L6B N/A GO:0003924 ... P01116 39875337
    1009793 9kpp:A (1.85) BS01 HEM N/A GO:0004497 ... A0A239NBQ6 40329414
    1009794 9kpq:A (2.42) BS01 MG N/A GO:0005829 ... A0A415KP13 40780197
    1009795 9kpq:A (2.42) BS02 TPP N/A GO:0005829 ... A0A415KP13 40780197
    1009796 9kpq:B (2.42) BS01 MG N/A GO:0005829 ... A0A415KP13 40780197
    1009797 9kpq:B (2.42) BS02 TPP N/A GO:0005829 ... A0A415KP13 40780197
    1009798 9kpr:A (2.53) BS01 A1EGE N/A GO:0000976 ... A9CH24 41430049
    1009799 9kpr:B (2.53) BS01 A1EGE N/A GO:0000976 ... A9CH24 41430049
    1009800 9kps:A (3.36) BS01 FAD N/A GO:0005515 ... Q00711 41062466

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).