SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1013201 9l2y:A (1.2) BS02 MNP N/A GO:0004064 ... P00918 40355440
    1013202 9l2z:A (1.2) BS01 ZN N/A GO:0004064 ... P00918 40355440
    1013203 9l2z:A (1.2) BS02 MNP N/A GO:0004064 ... P00918 40355440
    1013204 9l30:A (1.2) BS01 ZN N/A GO:0004064 ... P00918 40355440
    1013205 9l30:A (1.2) BS02 MNP N/A GO:0004064 ... P00918 40355440
    1013206 9l31:A (1.2) BS01 ZN N/A GO:0004064 ... P00918 40355440
    1013207 9l31:A (1.2) BS02 MNP N/A GO:0004064 ... P00918 40355440
    1013208 9l32:A (1.2) BS01 ZN N/A GO:0004064 ... P00918 40355440
    1013209 9l32:A (1.2) BS02 MNP N/A GO:0004064 ... P00918 40355440
    1013210 9l33:A (1.35) BS01 ZN N/A GO:0004064 ... P00918 40355440
    1013211 9l33:A (1.35) BS02 MNP N/A GO:0004064 ... P00918 40355440
    1013212 9l3c:A (2.23) BS01 A1L60 N/A N/A Q2G155 40229318
    1013213 9l3c:A (2.23) BS02 ZN N/A N/A Q2G155 40229318
    1013214 9l3c:A (2.23) BS03 CA N/A N/A Q2G155 40229318
    1013215 9l3c:B (2.23) BS01 A1L60 N/A N/A Q2G155 40229318
    1013216 9l3c:B (2.23) BS02 ZN N/A N/A Q2G155 40229318
    1013217 9l3c:B (2.23) BS03 CA N/A N/A Q2G155 40229318
    1013218 9l3d:A (1.9) BS01 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013219 9l3d:A (1.9) BS02 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013220 9l3d:A (1.9) BS03 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013221 9l3d:B (1.9) BS01 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013222 9l3d:B (1.9) BS02 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013223 9l3e:O (1.77) BS01 A1L6Z N/A GO:0000226 ... P04406 40712011
    1013224 9l3e:O (1.77) BS02 NAD N/A GO:0000226 ... P04406 40712011
    1013225 9l3e:P (1.77) BS01 NAD N/A GO:0000226 ... P04406 40712011
    1013226 9l3e:Q (1.77) BS01 NAD N/A GO:0000226 ... P04406 40712011
    1013227 9l3e:R (1.77) BS01 NAD N/A GO:0000226 ... P04406 40712011
    1013228 9l3f:A (3.09) BS01 A1EH7 N/A N/A Q9QX29 41584354
    1013229 9l3f:B (3.09) BS01 A1EH7 N/A N/A Q9QX29 41584354
    1013230 9l3f:C (3.09) BS01 A1EH7 N/A N/A Q9QX29 41584354
    1013231 9l3f:D (3.09) BS01 A1EH7 N/A N/A Q9QX29 41584354
    1013232 9l3i:A (3.1) BS01 peptide N/A N/A P0DTC2 41587975
    1013233 9l3i:B (3.1) BS01 peptide N/A N/A P0DTC2 41587975
    1013234 9l3i:C (3.1) BS01 peptide N/A N/A P0DTC2 41587975
    1013235 9l3i:C (3.1) BS02 peptide N/A N/A P0DTC2 41587975
    1013236 9l3j:A (2.74) BS01 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013237 9l3j:A (2.74) BS02 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013238 9l3j:A (2.74) BS03 BMA N/A GO:0000272 ... I8IVP5 40414580
    1013239 9l3j:A (2.74) BS04 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013240 9l3j:B (2.74) BS01 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013241 9l3j:B (2.74) BS02 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013242 9l3j:B (2.74) BS03 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013243 9l3j:B (2.74) BS04 XYS N/A GO:0000272 ... I8IVP5 40414580
    1013244 9l3j:B (2.74) BS05 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013245 9l3m:A (2.86) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013246 9l3m:A (2.86) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013247 9l3m:A (2.86) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013248 9l3m:B (2.86) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013249 9l3m:B (2.86) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013250 9l3m:B (2.86) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013251 9l3m:C (2.86) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013252 9l3m:C (2.86) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013253 9l3m:C (2.86) BS03 MG N/A GO:0004176 ... P28737 N/A
    1013254 9l3m:C (2.86) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1013255 9l3m:D (2.86) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013256 9l3m:D (2.86) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013257 9l3m:D (2.86) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013258 9l3m:E (2.86) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013259 9l3m:E (2.86) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013260 9l3m:E (2.86) BS03 MG N/A GO:0004176 ... P28737 N/A
    1013261 9l3m:E (2.86) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1013262 9l3m:F (2.86) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013263 9l3m:F (2.86) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013264 9l3m:F (2.86) BS03 MG N/A GO:0004176 ... P28737 N/A
    1013265 9l3o:A (2.0) BS01 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013266 9l3o:A (2.0) BS02 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013267 9l3o:A (2.0) BS03 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013268 9l3o:A (2.0) BS04 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013269 9l3o:A (2.0) BS05 XYS N/A GO:0000272 ... I8IVP5 40414580
    1013270 9l3o:A (2.0) BS06 GAL N/A GO:0000272 ... I8IVP5 40414580
    1013271 9l3o:B (2.0) BS01 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013272 9l3o:B (2.0) BS02 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013273 9l3o:B (2.0) BS03 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013274 9l3o:B (2.0) BS04 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013275 9l3o:B (2.0) BS05 XYS N/A GO:0000272 ... I8IVP5 40414580
    1013276 9l3o:B (2.0) BS06 GAL N/A GO:0000272 ... I8IVP5 40414580
    1013277 9l3p:A (2.34) BS01 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013278 9l3p:A (2.34) BS02 MAN N/A GO:0000272 ... I8IVP5 40414580
    1013279 9l3p:A (2.34) BS03 GLC N/A GO:0000272 ... I8IVP5 40414580
    1013280 9l3p:A (2.34) BS04 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013281 9l3p:A (2.34) BS05 GAL N/A GO:0000272 ... I8IVP5 40414580
    1013282 9l3p:A (2.34) BS06 XYS N/A GO:0000272 ... I8IVP5 40414580
    1013283 9l3p:A (2.34) BS07 XYS N/A GO:0000272 ... I8IVP5 40414580
    1013284 9l3p:A (2.34) BS08 BGC N/A GO:0000272 ... I8IVP5 40414580
    1013285 9l3p:A (2.34) BS09 XYS N/A GO:0000272 ... I8IVP5 40414580
    1013286 9l3p:A (2.34) BS10 GAL N/A GO:0000272 ... I8IVP5 40414580
    1013287 9l3q:A (2.7) BS01 peptide N/A N/A P0DTC2 41587975
    1013288 9l3q:B (2.7) BS01 peptide N/A N/A P0DTC2 41587975
    1013289 9l3q:B (2.7) BS02 peptide N/A N/A P0DTC2 41587975
    1013290 9l3q:C (2.7) BS01 peptide N/A N/A P0DTC2 41587975
    1013291 9l3r:A (2.5) BS01 A1L62 N/A GO:0001779 ... O00329 40520883
    1013292 9l3s:A (2.57) BS01 A1L60 N/A N/A Q2G155 40229318
    1013293 9l3s:A (2.57) BS02 ZN N/A N/A Q2G155 40229318
    1013294 9l3s:A (2.57) BS03 CA N/A N/A Q2G155 40229318
    1013295 9l3s:B (2.57) BS01 A1L60 N/A N/A Q2G155 40229318
    1013296 9l3s:B (2.57) BS02 ZN N/A N/A Q2G155 40229318
    1013297 9l3s:B (2.57) BS03 CA N/A N/A Q2G155 40229318
    1013298 9l3t:A (2.36) BS01 AYR N/A GO:0003677 ... P37231 40172924
    1013299 9l3u:A (2.96) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013300 9l3u:A (2.96) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013301 9l3u:A (2.96) BS03 MG N/A GO:0004176 ... P28737 N/A
    1013302 9l3u:A (2.96) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1013303 9l3u:B (2.96) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013304 9l3u:B (2.96) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013305 9l3u:B (2.96) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013306 9l3u:C (2.96) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013307 9l3u:C (2.96) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013308 9l3u:C (2.96) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013309 9l3u:D (2.96) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013310 9l3u:D (2.96) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013311 9l3u:D (2.96) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013312 9l3u:E (2.96) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013313 9l3u:E (2.96) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013314 9l3u:E (2.96) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013315 9l3u:F (2.96) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013316 9l3u:F (2.96) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013317 9l3u:F (2.96) BS03 ATP N/A GO:0004176 ... P28737 N/A
    1013318 9l3u:G (2.96) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1013319 9l3u:G (2.96) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1013320 9l3z:A (3.9) BS01 peptide N/A GO:0004930 ... Q99788 39752296
    1013321 9l40:A (2.87) BS01 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013322 9l40:A (2.87) BS02 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013323 9l40:A (2.87) BS03 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013324 9l40:B (2.87) BS01 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013325 9l40:B (2.87) BS02 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013326 9l40:B (2.87) BS03 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013327 9l42:A (2.9) BS01 CLR N/A GO:0004930 ... Q9H3N8 40143071
    1013328 9l42:A (2.9) BS02 HSM N/A GO:0004930 ... Q9H3N8 40143071
    1013329 9l43:C (3.83) BS01 ZN N/A GO:0000077 ... Q8WXE1 40379520
    1013330 9l43:D (3.83) BS01 ZN N/A GO:0000077 ... Q8WXE1 40379520
    1013331 9l44:A (3.02) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013332 9l44:A (3.02) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013333 9l44:B (3.02) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013334 9l44:B (3.02) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013335 9l44:C (3.02) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013336 9l44:C (3.02) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013337 9l44:D (3.02) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013338 9l44:D (3.02) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 N/A
    1013339 9l45:A (3.95) BS01 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013340 9l45:A (3.95) BS02 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013341 9l45:A (3.95) BS03 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013342 9l45:B (3.95) BS01 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013343 9l45:B (3.95) BS02 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013344 9l45:B (3.95) BS03 A1EIE N/A GO:0000077 ... Q13535 40379520
    1013345 9l45:C (3.95) BS01 ZN N/A GO:0000077 ... Q8WXE1 40379520
    1013346 9l45:D (3.95) BS01 ZN N/A GO:0000077 ... Q8WXE1 40379520
    1013347 9l46:A (6.29) BS01 AGS N/A GO:0000077 ... Q13535 40379520
    1013348 9l46:B (6.29) BS01 AGS N/A GO:0000077 ... Q13535 40379520
    1013349 9l47:A (2.8) BS01 peptide N/A GO:0000139 ... Q2UV93 40044006
    1013350 9l47:D (2.8) BS01 peptide N/A GO:0000139 ... Q2UV93 40044006
    1013351 9l48:A (1.9) BS01 peptide N/A GO:0000139 ... S5DHS4 40044006
    1013352 9l49:A (3.0) BS01 peptide N/A GO:0000139 ... Q2UV93 40044006
    1013353 9l4a:A (1.9) BS01 peptide N/A GO:0000139 ... S5DHS4 40044006
    1013354 9l4a:D (1.9) BS01 peptide N/A GO:0000139 ... S5DHS4 40044006
    1013355 9l4b:A (3.2) BS01 A1EIK N/A GO:0000077 ... Q13535 40379520
    1013356 9l4b:B (3.2) BS01 A1EIK N/A GO:0000077 ... Q13535 40379520
    1013357 9l4c:C (4.06) BS01 ZN N/A GO:0000077 ... Q8WXE1 40379520
    1013358 9l4c:D (4.06) BS01 ZN N/A GO:0000077 ... Q8WXE1 40379520
    1013359 9l4d:A (3.79) BS01 A1EIK N/A GO:0000077 ... Q13535 40379520
    1013360 9l4d:B (3.79) BS01 A1EIK N/A GO:0000077 ... Q13535 40379520
    1013361 9l4d:C (3.79) BS01 ZN N/A GO:0000077 ... Q8WXE1 40379520
    1013362 9l4f:A (6.22) BS01 AGS N/A GO:0000077 ... Q13535 40379520
    1013363 9l4f:B (6.22) BS01 AGS N/A GO:0000077 ... Q13535 40379520
    1013364 9l4g:A (2.7) BS01 peptide N/A N/A A0A6F8VJ76 40185448
    1013365 9l4h:A (3.1) BS01 peptide N/A N/A A0A6F8VJ76 40185448
    1013366 9l4i:A (2.5) BS01 peptide N/A GO:0000139 ... G9MDC7 40185448
    1013367 9l4j:E (3.0) BS01 ZN N/A N/A Q9D0L1 N/A
    1013368 9l4n:A (2.03) BS01 NAP N/A GO:0004473 ... P76558 41197718
    1013369 9l4n:A (2.03) BS02 ACO N/A GO:0004473 ... P76558 41197718
    1013370 9l4o:A (1.9) BS01 peptide N/A N/A P93026 40891502
    1013371 9l4p:A (1.95) BS01 peptide N/A N/A P93026 40891502
    1013372 9l4q:A (2.27) BS01 SAH N/A GO:0008168 ... A0A229RJG8 40601550
    1013373 9l4q:B (2.27) BS01 SAH N/A GO:0008168 ... A0A229RJG8 40601550
    1013374 9l4s:A (1.96) BS01 peptide N/A N/A A0A023J7B5 N/A
    1013375 9l4s:B (1.96) BS01 peptide N/A N/A A0A023J7B5 N/A
    1013376 9l4t:A (2.16) BS01 MET N/A N/A Q2T3H2 40905665
    1013377 9l4t:B (2.16) BS01 MET N/A N/A Q2T3H2 40905665
    1013378 9l4v:A (2.3) BS01 SAM N/A N/A Q2T3H2 40905665
    1013379 9l4v:A (2.3) BS02 A1LUD N/A N/A Q2T3H2 40905665
    1013380 9l50:A (1.85) BS01 MN N/A N/A A0A6G1IFE0 N/A
    1013381 9l50:B (1.85) BS01 MN N/A N/A A0A6G1IFE0 N/A
    1013382 9l51:A (1.9) BS01 FE N/A N/A A0A6G1IFE0 N/A
    1013383 9l51:B (1.9) BS01 FE N/A N/A A0A6G1IFE0 N/A
    1013384 9l52:A (1.8) BS01 FE N/A N/A N/A N/A
    1013385 9l52:B (1.8) BS01 FE N/A N/A N/A N/A
    1013386 9l54:A (3.04) BS01 peptide N/A GO:0005788 ... P38435 N/A
    1013387 9l54:A (3.04) BS02 A1EIL N/A GO:0005788 ... P38435 N/A
    1013388 9l54:A (3.04) BS03 CLR N/A GO:0005788 ... P38435 N/A
    1013389 9l54:A (3.04) BS04 Y01 N/A GO:0005788 ... P38435 N/A
    1013390 9l54:A (3.04) BS05 BCT N/A GO:0005788 ... P38435 N/A
    1013391 9l55:A (2.87) BS01 dna N/A GO:0003677 ... B4FJZ1 40562815
    1013392 9l55:A (2.87) BS02 dna N/A GO:0003677 ... B4FJZ1 40562815
    1013393 9l55:A (2.87) BS03 MG N/A GO:0003677 ... B4FJZ1 40562815
    1013394 9l55:A (2.87) BS04 MG N/A GO:0003677 ... B4FJZ1 40562815
    1013395 9l55:B (2.87) BS01 dna N/A GO:0003677 ... B4FJZ1 40562815
    1013396 9l55:B (2.87) BS02 dna N/A GO:0003677 ... B4FJZ1 40562815
    1013397 9l55:B (2.87) BS03 MG N/A GO:0003677 ... B4FJZ1 40562815
    1013398 9l56:A (2.42) BS01 MN N/A GO:0003677 ... B4FJZ1 40562815
    1013399 9l56:A (2.42) BS02 MN N/A GO:0003677 ... B4FJZ1 40562815
    1013400 9l56:B (2.42) BS01 MN N/A GO:0003677 ... B4FJZ1 40562815

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).