SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1014201 9l9h:D (2.87) BS03 MG N/A GO:0004176 ... P28737 N/A
    1014202 9l9h:D (2.87) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1014203 9l9h:E (2.87) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1014204 9l9h:E (2.87) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1014205 9l9h:E (2.87) BS03 MG N/A GO:0004176 ... P28737 N/A
    1014206 9l9h:E (2.87) BS04 ATP N/A GO:0004176 ... P28737 N/A
    1014207 9l9h:F (2.87) BS01 peptide N/A GO:0004176 ... P28737 N/A
    1014208 9l9h:F (2.87) BS02 ATP N/A GO:0004176 ... P28737 N/A
    1014209 9l9h:F (2.87) BS03 MG N/A GO:0004176 ... P28737 N/A
    1014210 9l9m:A (1.42) BS01 dna N/A N/A A0A377HK12 N/A
    1014211 9l9p:J (4.3) BS01 SF4 N/A GO:0030430 ... Q6XQC2 40143278
    1014212 9l9s:A (3.305) BS01 dna N/A N/A N/A N/A
    1014213 9l9s:B (3.305) BS01 dna N/A N/A N/A N/A
    1014214 9l9s:C (3.305) BS01 dna N/A N/A N/A N/A
    1014215 9l9t:A (3.142) BS01 peptide N/A GO:0016020 ... A3EXD6 40664277
    1014216 9l9t:B (3.142) BS01 peptide N/A GO:0016020 ... A3EXD6 40664277
    1014217 9l9w:A (5.87) BS01 dna N/A GO:0003676 ... A0A1I7NFD7 39997222
    1014218 9l9w:A (5.87) BS02 dna N/A GO:0003676 ... A0A1I7NFD7 39997222
    1014219 9l9w:B (5.87) BS01 dna N/A GO:0007165 ... A0A1I7NFG5 39997222
    1014220 9l9x:A (6.7) BS01 dna N/A GO:0003676 ... A0A1I7NFD7 39997222
    1014221 9l9x:A (6.7) BS02 dna N/A GO:0003676 ... A0A1I7NFD7 39997222
    1014222 9l9x:B (6.7) BS01 dna N/A GO:0007165 ... A0A1I7NFG5 39997222
    1014223 9la8:A (1.56) BS01 SAH N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014224 9la8:A (1.56) BS02 A1L3V N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014225 9la8:B (1.56) BS01 SAH N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014226 9la8:B (1.56) BS02 A1L3V N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014227 9la9:B (4.38) BS01 GNP N/A GO:0001750 ... P51159 41083534
    1014228 9lac:A (1.7) BS01 A1EI6 N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014229 9lac:A (1.7) BS02 SAH N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014230 9lac:B (1.7) BS01 A1EI6 N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014231 9lac:B (1.7) BS02 SAH N/A GO:0003824 ... A0A5J6IBS5 N/A
    1014232 9lad:C (2.02) BS01 CA N/A N/A P97738 41308985
    1014233 9lad:C (2.02) BS02 CA N/A N/A P97738 41308985
    1014234 9laf:C (2.14) BS01 peptide N/A GO:0006511 ... Q15369 40153999
    1014235 9lay:A (2.62) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014236 9lay:B (2.62) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014237 9lay:B (2.62) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014238 9lay:B (2.62) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014239 9lay:B (2.62) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014240 9lay:C (2.62) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014241 9lay:C (2.62) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014242 9lay:D (2.62) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014243 9lay:E (2.62) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014244 9lay:E (2.62) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014245 9lay:E (2.62) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014246 9lay:E (2.62) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014247 9lay:F (2.62) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014248 9lay:F (2.62) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014249 9lay:G (2.62) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014250 9lay:H (2.62) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014251 9lay:H (2.62) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014252 9lay:H (2.62) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014253 9lay:I (2.62) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014254 9lay:I (2.62) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014255 9laz:A (2.69) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014256 9laz:B (2.69) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014257 9laz:B (2.69) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014258 9laz:B (2.69) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014259 9laz:B (2.69) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014260 9laz:C (2.69) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014261 9laz:C (2.69) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014262 9laz:D (2.69) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014263 9laz:E (2.69) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014264 9laz:E (2.69) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014265 9laz:E (2.69) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014266 9laz:E (2.69) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014267 9laz:F (2.69) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014268 9laz:F (2.69) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014269 9laz:G (2.69) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014270 9laz:H (2.69) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014271 9laz:H (2.69) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014272 9laz:H (2.69) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014273 9laz:H (2.69) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014274 9laz:I (2.69) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014275 9laz:I (2.69) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014276 9lb0:A (2.74) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014277 9lb0:B (2.74) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014278 9lb0:B (2.74) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014279 9lb0:B (2.74) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014280 9lb0:B (2.74) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014281 9lb0:C (2.74) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014282 9lb0:C (2.74) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014283 9lb0:C (2.74) BS03 MQ7 N/A GO:0016020 ... A9WDT8 41315263
    1014284 9lb0:C (2.74) BS04 MQ7 N/A GO:0016020 ... A9WDT8 41315263
    1014285 9lb0:D (2.74) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014286 9lb0:E (2.74) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014287 9lb0:E (2.74) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014288 9lb0:E (2.74) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014289 9lb0:E (2.74) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014290 9lb0:F (2.74) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014291 9lb0:F (2.74) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014292 9lb0:F (2.74) BS03 MQ7 N/A GO:0016020 ... A9WDT8 41315263
    1014293 9lb0:F (2.74) BS04 MQ7 N/A GO:0016020 ... A9WDT8 41315263
    1014294 9lb0:G (2.74) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014295 9lb0:H (2.74) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014296 9lb0:H (2.74) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014297 9lb0:H (2.74) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014298 9lb0:H (2.74) BS04 HEM N/A GO:0009055 ... A9WDT6 41315263
    1014299 9lb0:I (2.74) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014300 9lb0:I (2.74) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014301 9lb0:I (2.74) BS03 MQ7 N/A GO:0016020 ... A9WDT8 41315263
    1014302 9lb0:I (2.74) BS04 MQ7 N/A GO:0016020 ... A9WDT8 41315263
    1014303 9lb1:A (2.9) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014304 9lb1:B (2.9) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014305 9lb1:B (2.9) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014306 9lb1:B (2.9) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014307 9lb1:C (2.9) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014308 9lb1:C (2.9) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014309 9lb1:C (2.9) BS03 1L3 N/A GO:0016020 ... A9WDT8 41315263
    1014310 9lb1:C (2.9) BS04 1L3 N/A GO:0016020 ... A9WDT8 41315263
    1014311 9lb1:D (2.9) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014312 9lb1:E (2.9) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014313 9lb1:E (2.9) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014314 9lb1:E (2.9) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014315 9lb1:F (2.9) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014316 9lb1:F (2.9) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014317 9lb1:F (2.9) BS03 1L3 N/A GO:0016020 ... A9WDT8 41315263
    1014318 9lb1:G (2.9) BS01 FAD N/A GO:0000104 ... A9WDT7 41315263
    1014319 9lb1:H (2.9) BS01 SF4 N/A GO:0009055 ... A9WDT6 41315263
    1014320 9lb1:H (2.9) BS02 FES N/A GO:0009055 ... A9WDT6 41315263
    1014321 9lb1:H (2.9) BS03 F3S N/A GO:0009055 ... A9WDT6 41315263
    1014322 9lb1:I (2.9) BS01 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014323 9lb1:I (2.9) BS02 HEM N/A GO:0016020 ... A9WDT8 41315263
    1014324 9lb1:I (2.9) BS03 1L3 N/A GO:0016020 ... A9WDT8 41315263
    1014325 9lb1:I (2.9) BS04 1L3 N/A GO:0016020 ... A9WDT8 41315263
    1014326 9lb2:B (1.4) BS01 BU3 N/A N/A P29326 N/A
    1014327 9lb2:B (1.4) BS02 BU3 N/A N/A P29326 N/A
    1014328 9lb7:A (2.35) BS01 XGP N/A GO:0003824 ... A0A075U1V9 40668605
    1014329 9lb7:A (2.35) BS02 MG N/A GO:0003824 ... A0A075U1V9 40668605
    1014330 9lbt:A (1.99) BS01 peptide N/A GO:0001618 ... P27487 N/A
    1014331 9lbt:B (1.99) BS01 peptide N/A GO:0001618 ... P27487 N/A
    1014332 9lbv:B (1.85) BS01 ADP N/A GO:0000105 ... Q9HVW9 40729526
    1014333 9lby:A (2.08) BS01 FE N/A GO:0009611 ... Q8W0V2 N/A
    1014334 9lby:B (2.08) BS01 FE N/A GO:0009611 ... Q8W0V2 N/A
    1014335 9lc2:A (2.7) BS01 dna N/A N/A Q12857 41398321
    1014336 9lc2:A (2.7) BS02 dna N/A N/A Q12857 41398321
    1014337 9lc2:A (2.7) BS03 ZN N/A N/A Q12857 41398321
    1014338 9lc2:B (2.7) BS01 dna N/A N/A Q12857 41398321
    1014339 9lc2:B (2.7) BS02 dna N/A N/A Q12857 41398321
    1014340 9lc2:B (2.7) BS03 dna N/A N/A Q12857 41398321
    1014341 9lc2:B (2.7) BS04 ZN N/A N/A Q12857 41398321
    1014342 9lc9:A (2.0008) BS01 FAD N/A GO:0003955 ... A0A0U0YVA4 N/A
    1014343 9lc9:B (2.0008) BS01 FAD N/A GO:0003955 ... A0A0U0YVA4 N/A
    1014344 9lck:A (2.98) BS01 rna N/A GO:0003723 ... Q9Q0U9 N/A
    1014345 9lck:A (2.98) BS02 rna N/A GO:0003723 ... Q9Q0U9 N/A
    1014346 9lck:B (2.98) BS01 rna N/A GO:0000166 ... Q9Q0V0 N/A
    1014347 9lcm:B (1.82) BS01 dna N/A N/A A0A377HK12 N/A
    1014348 9lcs:A (1.578) BS01 dna N/A N/A A0A377HK12 N/A
    1014349 9lcu:A (2.32) BS01 dna N/A N/A A0A377HK12 N/A
    1014350 9lcw:B (2.7065) BS01 dna N/A N/A A0A377HK12 N/A
    1014351 9lcw:B (2.7065) BS02 dna N/A N/A A0A377HK12 N/A
    1014352 9lcx:A (3.18) BS01 dna N/A N/A N/A 41249818
    1014353 9lcx:A (3.18) BS02 dna N/A N/A N/A 41249818
    1014354 9lcx:A (3.18) BS03 ZN N/A N/A N/A 41249818
    1014355 9lcy:A (3.02) BS01 dna N/A N/A N/A 41249818
    1014356 9lcy:A (3.02) BS02 dna N/A N/A N/A 41249818
    1014357 9lcy:A (3.02) BS03 ZN N/A N/A N/A 41249818
    1014358 9lcz:A (2.93) BS01 dna N/A N/A N/A 41249818
    1014359 9lcz:A (2.93) BS02 dna N/A N/A N/A 41249818
    1014360 9lcz:A (2.93) BS03 ZN N/A N/A N/A 41249818
    1014361 9ld0:A (3.17) BS01 dna N/A N/A N/A 41249818
    1014362 9ld0:A (3.17) BS02 dna N/A N/A N/A 41249818
    1014363 9ld1:A (2.64) BS01 dna N/A N/A N/A 41249818
    1014364 9ld1:A (2.64) BS02 dna N/A N/A N/A 41249818
    1014365 9ld1:A (2.64) BS03 ZN N/A N/A N/A 41249818
    1014366 9ld3:A (1.82) BS01 AR6 N/A GO:0000215 ... Q5JFX3 N/A
    1014367 9ld3:A (1.82) BS02 A1EJC N/A GO:0000215 ... Q5JFX3 N/A
    1014368 9ld3:B (1.82) BS01 A1EJC N/A GO:0000215 ... Q5JFX3 N/A
    1014369 9ld3:B (1.82) BS02 AR6 N/A GO:0000215 ... Q5JFX3 N/A
    1014370 9ld6:A (2.01) BS01 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014371 9ld6:A (2.01) BS02 NAD N/A GO:0000215 ... Q5JFX3 N/A
    1014372 9lda:A (2.33) BS01 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014373 9lda:A (2.33) BS02 A1EJJ N/A GO:0000215 ... Q5JFX3 N/A
    1014374 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    1014375 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    1014376 9ldc:A (1.97) BS01 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014377 9ldd:A (1.82) BS01 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014378 9lde:A (1.97) BS01 HQG N/A GO:0000215 ... Q5JFX3 N/A
    1014379 9lde:A (1.97) BS02 A3P N/A GO:0000215 ... Q5JFX3 N/A
    1014380 9lde:B (1.97) BS01 HQG N/A GO:0000215 ... Q5JFX3 N/A
    1014381 9lde:B (1.97) BS02 A3P N/A GO:0000215 ... Q5JFX3 N/A
    1014382 9ldf:A (1.82) BS01 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014383 9ldf:A (1.82) BS02 A1EJE N/A GO:0000215 ... Q5JFX3 N/A
    1014384 9ldg:A (2.4) BS01 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014385 9ldg:A (2.4) BS02 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014386 9ldg:A (2.4) BS03 A1EJE N/A GO:0000215 ... Q5JFX3 N/A
    1014387 9ldg:B (2.4) BS01 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014388 9ldg:B (2.4) BS02 dna N/A GO:0000215 ... Q5JFX3 N/A
    1014389 9ldg:B (2.4) BS03 A1EJE N/A GO:0000215 ... Q5JFX3 N/A
    1014390 9ldh:A (1.94) BS01 A1EJD N/A GO:0000215 ... Q5JFX3 N/A
    1014391 9ldi:A (1.95) BS01 A1EJC N/A GO:0000215 ... Q5JFX3 N/A
    1014392 9ldo:A (1.142) BS01 ZN N/A GO:0004064 ... P00918 40355440
    1014393 9ldp:A (1.14) BS01 ZN N/A GO:0004064 ... P00918 40355440
    1014394 9ldr:A (3.58) BS01 LEU N/A GO:0003333 ... Q92536 N/A
    1014395 9lds:A (1.6) BS01 peptide N/A N/A N/A 40215243
    1014396 9lds:C (1.6) BS01 peptide N/A N/A N/A 40215243
    1014397 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    1014398 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    1014399 9ldv:R (2.78) BS01 A1EJQ N/A N/A N/A 41570822
    1014400 9ldw:R (2.62) BS01 CLR N/A N/A N/A 41570822

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).