SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1020601 9m0p:Ll (2.78) BS01 rna N/A GO:0002181 ... P62891 N/A
    1020602 9m0p:Ll (2.78) BS02 rna N/A GO:0002181 ... P62891 N/A
    1020603 9m0p:Lm (2.78) BS01 rna N/A GO:0002181 ... P62987 N/A
    1020604 9m0p:Lm (2.78) BS02 ZN N/A GO:0002181 ... P62987 N/A
    1020605 9m0p:Lo (2.78) BS01 rna N/A GO:0002181 ... P83881 N/A
    1020606 9m0p:Lo (2.78) BS02 rna N/A GO:0002181 ... P83881 N/A
    1020607 9m0p:Lo (2.78) BS03 ZN N/A GO:0002181 ... P83881 N/A
    1020608 9m0p:Lp (2.78) BS01 rna N/A GO:0002181 ... P61513 N/A
    1020609 9m0p:Lp (2.78) BS02 ZN N/A GO:0002181 ... P61513 N/A
    1020610 9m0p:Lr (2.78) BS01 rna N/A GO:0002181 ... P46779 N/A
    1020611 9m0p:SA (2.78) BS01 rna N/A GO:0000028 ... P08865 N/A
    1020612 9m0p:SB (2.78) BS01 rna N/A GO:0002181 ... P61247 N/A
    1020613 9m0p:SC (2.78) BS01 rna N/A GO:0002181 ... P15880 N/A
    1020614 9m0p:SD (2.78) BS01 rna N/A GO:0001228 ... P23396 N/A
    1020615 9m0p:SE (2.78) BS01 rna N/A GO:0002181 ... P62701 N/A
    1020616 9m0p:SF (2.78) BS01 rna N/A GO:0002181 ... P46782 N/A
    1020617 9m0p:SG (2.78) BS01 rna N/A GO:0002181 ... P62753 N/A
    1020618 9m0p:SH (2.78) BS01 rna N/A GO:0002181 ... P62081 N/A
    1020619 9m0p:SI (2.78) BS01 rna N/A GO:0002181 ... P62241 N/A
    1020620 9m0p:SJ (2.78) BS01 rna N/A GO:0002181 ... P46781 N/A
    1020621 9m0p:SK (2.78) BS01 rna N/A GO:0002181 ... P46783 N/A
    1020622 9m0p:SL (2.78) BS01 rna N/A GO:0002181 ... P62280 N/A
    1020623 9m0p:SN (2.78) BS01 rna N/A GO:0000462 ... P62277 N/A
    1020624 9m0p:SO (2.78) BS01 rna N/A GO:0000028 ... P62263 N/A
    1020625 9m0p:SP (2.78) BS01 rna N/A GO:0000056 ... P62841 N/A
    1020626 9m0p:SQ (2.78) BS01 rna N/A GO:0000462 ... P62249 N/A
    1020627 9m0p:SR (2.78) BS01 rna N/A GO:0002181 ... P08708 N/A
    1020628 9m0p:ST (2.78) BS01 rna N/A GO:0000028 ... P39019 N/A
    1020629 9m0p:SU (2.78) BS01 rna N/A GO:0002181 ... P60866 N/A
    1020630 9m0p:SW (2.78) BS01 rna N/A GO:0002181 ... P62244 N/A
    1020631 9m0p:SX (2.78) BS01 rna N/A GO:0002181 ... P62266 N/A
    1020632 9m0p:SY (2.78) BS01 rna N/A GO:0002181 ... P62847 N/A
    1020633 9m0p:SZ (2.78) BS01 rna N/A GO:0002181 ... P62851 N/A
    1020634 9m0p:Sa (2.78) BS01 rna N/A GO:0002181 ... P62854 N/A
    1020635 9m0p:Sa (2.78) BS02 ZN N/A GO:0002181 ... P62854 N/A
    1020636 9m0p:Sb (2.78) BS01 rna N/A GO:0002181 ... P42677 N/A
    1020637 9m0p:Sc (2.78) BS01 rna N/A GO:0000028 ... P62857 N/A
    1020638 9m0p:Sd (2.78) BS01 rna N/A GO:0002181 ... P62273 N/A
    1020639 9m0p:Se (2.78) BS01 rna N/A N/A P62861 N/A
    1020640 9m0p:Sg (2.78) BS01 rna N/A GO:0001891 ... P63244 N/A
    1020641 9m0q:B (2.18) BS01 OO0 N/A GO:0009058 ... N/A N/A
    1020642 9m0r:R (2.47) BS01 peptide N/A GO:0004930 ... Q9GZQ6 40839429
    1020643 9m0s:A (3.5) BS01 ACO N/A GO:0000139 ... O00400 40204708
    1020644 9m0t:A (1.2) BS01 MG N/A GO:0005829 ... O32264 N/A
    1020645 9m0u:A (1.89) BS01 ZN N/A N/A Q15326 N/A
    1020646 9m0u:A (1.89) BS02 ZN N/A N/A Q15326 N/A
    1020647 9m0u:B (1.89) BS01 ZN N/A N/A Q15326 N/A
    1020648 9m0u:B (1.89) BS02 ZN N/A N/A Q15326 N/A
    1020649 9m0v:A (1.5) BS01 NAP N/A GO:0005829 ... O32264 N/A
    1020650 9m0v:A (1.5) BS02 MG N/A GO:0005829 ... O32264 N/A
    1020651 9m0x:R (2.71) BS01 AG2 N/A N/A N/A N/A
    1020652 9m0x:R (2.71) BS02 AG2 N/A N/A N/A N/A
    1020653 9m0z:R (2.74) BS01 N2P N/A N/A N/A N/A
    1020654 9m10:A (2.02) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020655 9m10:A (2.02) BS02 A1L7X N/A GO:0003677 ... P13053 40494220
    1020656 9m11:A (2.05) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020657 9m11:A (2.05) BS02 A1L7Y N/A GO:0003677 ... P13053 40494220
    1020658 9m12:A (1.86) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020659 9m12:A (1.86) BS02 peptide N/A GO:0003677 ... P13053 40494220
    1020660 9m12:A (1.86) BS03 A1L7Z N/A GO:0003677 ... P13053 40494220
    1020661 9m12:B (1.86) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020662 9m12:B (1.86) BS02 peptide N/A GO:0003677 ... P13053 40494220
    1020663 9m12:B (1.86) BS03 A1L7Z N/A GO:0003677 ... P13053 40494220
    1020664 9m13:A (1.68) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020665 9m13:A (1.68) BS02 A1L70 N/A GO:0003677 ... P13053 40494220
    1020666 9m14:A (2.0) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020667 9m14:A (2.0) BS02 A1L71 N/A GO:0003677 ... P13053 40494220
    1020668 9m15:A (2.18) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020669 9m15:A (2.18) BS02 A1L73 N/A GO:0003677 ... P13053 40494220
    1020670 9m16:A (2.06) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020671 9m16:A (2.06) BS02 A1L74 N/A GO:0003677 ... P13053 40494220
    1020672 9m17:A (1.81) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020673 9m17:A (1.81) BS02 A1L75 N/A GO:0003677 ... P13053 40494220
    1020674 9m18:A (1.96) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020675 9m18:A (1.96) BS02 A1L76 N/A GO:0003677 ... P13053 40494220
    1020676 9m19:A (2.05) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020677 9m19:A (2.05) BS02 A1L77 N/A GO:0003677 ... P13053 40494220
    1020678 9m1a:A (1.78) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020679 9m1a:A (1.78) BS02 A1L78 N/A GO:0003677 ... P13053 40494220
    1020680 9m1b:A (1.77) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020681 9m1b:A (1.77) BS02 A1L79 N/A GO:0003677 ... P13053 40494220
    1020682 9m1c:A (1.67) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020683 9m1c:A (1.67) BS02 A1L8A N/A GO:0003677 ... P13053 40494220
    1020684 9m1d:A (1.44) BS01 peptide N/A GO:0003677 ... P13053 40494220
    1020685 9m1d:A (1.44) BS02 A1L8B N/A GO:0003677 ... P13053 40494220
    1020686 9m1e:A (2.99) BS01 STL N/A N/A Q95NM6 N/A
    1020687 9m1e:A (2.99) BS02 MG N/A N/A Q95NM6 N/A
    1020688 9m1e:B (2.99) BS01 STL N/A N/A Q95NM6 N/A
    1020689 9m1e:B (2.99) BS02 STL N/A N/A Q95NM6 N/A
    1020690 9m1e:B (2.99) BS03 MG N/A N/A Q95NM6 N/A
    1020691 9m1f:A (1.92) BS01 9E0 N/A GO:0000166 ... P00954 40406164
    1020692 9m1f:A (1.92) BS02 ATP N/A GO:0000166 ... P00954 40406164
    1020693 9m1f:B (1.92) BS01 9E0 N/A GO:0000166 ... P00954 40406164
    1020694 9m1f:B (1.92) BS02 ATP N/A GO:0000166 ... P00954 40406164
    1020695 9m1g:A (2.15) BS01 9E0 N/A GO:0000166 ... P00954 40406164
    1020696 9m1g:A (2.15) BS02 ATP N/A GO:0000166 ... P00954 40406164
    1020697 9m1g:B (2.15) BS01 9E0 N/A GO:0000166 ... P00954 40406164
    1020698 9m1g:B (2.15) BS02 ATP N/A GO:0000166 ... P00954 40406164
    1020699 9m1h:A (2.55) BS01 P2E N/A GO:0004930 ... P34995 40366695
    1020700 9m1i:b (2.48) BS01 GTP N/A GO:0000226 ... Q767L7 41166473
    1020701 9m1j:b (2.14) BS01 GTP N/A GO:0000226 ... Q767L7 41166473
    1020702 9m1k:G (2.45) BS01 GTP N/A GO:0003924 ... P36404 41166473
    1020703 9m1k:G (2.45) BS02 MG N/A GO:0003924 ... P36404 41166473
    1020704 9m1k:b (2.45) BS01 GTP N/A GO:0000226 ... Q767L7 41166473
    1020705 9m1l:G (2.55) BS01 GTP N/A GO:0003924 ... P36404 41166473
    1020706 9m1l:a (2.55) BS01 GTP N/A GO:0000226 ... Q2XVP4 41166473
    1020707 9m1l:b (2.55) BS01 GTP N/A GO:0000226 ... Q767L7 41166473
    1020708 9m1m:C (2.21) BS01 GDP N/A GO:0003924 ... Q15814 41166473
    1020709 9m1m:G (2.21) BS01 GDP N/A GO:0003924 ... P36404 41166473
    1020710 9m1m:G (2.21) BS02 AF3 N/A GO:0003924 ... P36404 41166473
    1020711 9m1m:G (2.21) BS03 MG N/A GO:0003924 ... P36404 41166473
    1020712 9m1m:a (2.21) BS01 GTP N/A GO:0000226 ... Q2XVP4 41166473
    1020713 9m1m:b (2.21) BS01 GTP N/A GO:0000226 ... Q767L7 41166473
    1020714 9m1n:C (2.24) BS01 GDP N/A GO:0003924 ... Q15814 41166473
    1020715 9m1n:G (2.24) BS01 GDP N/A GO:0003924 ... P36404 41166473
    1020716 9m1n:G (2.24) BS02 AF3 N/A GO:0003924 ... P36404 41166473
    1020717 9m1n:G (2.24) BS03 MG N/A GO:0003924 ... P36404 41166473
    1020718 9m1n:a (2.24) BS01 GTP N/A GO:0000226 ... Q2XVP4 41166473
    1020719 9m1n:a (2.24) BS02 MG N/A GO:0000226 ... Q2XVP4 41166473
    1020720 9m1n:b (2.24) BS01 GTP N/A GO:0000226 ... Q767L7 41166473
    1020721 9m1o:R (2.49) BS01 peptide N/A GO:0004930 ... Q9Y5X5 40839429
    1020722 9m1p:R (2.8) BS01 HSM N/A N/A N/A N/A
    1020723 9m1v:A (1.7) BS01 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020724 9m1v:A (1.7) BS02 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020725 9m1v:B (1.7) BS01 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020726 9m1v:B (1.7) BS02 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020727 9m1v:C (1.7) BS01 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020728 9m1v:C (1.7) BS02 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020729 9m1v:D (1.7) BS01 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020730 9m1v:D (1.7) BS02 UD1 N/A GO:0005524 ... P9WFQ3 N/A
    1020731 9m1z:A (3.0) BS01 1FM N/A GO:0000165 ... P52564 N/A
    1020732 9m1z:B (3.0) BS01 1FM N/A GO:0000165 ... P52564 N/A
    1020733 9m1z:C (3.0) BS01 1FM N/A GO:0000165 ... P52564 N/A
    1020734 9m1z:D (3.0) BS01 1FM N/A GO:0000165 ... P52564 N/A
    1020735 9m21:A (2.621) BS01 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020736 9m21:A (2.621) BS02 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020737 9m21:A (2.621) BS03 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020738 9m21:A (2.621) BS04 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020739 9m21:A (2.621) BS05 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020740 9m21:A (2.621) BS06 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020741 9m21:A (2.621) BS07 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020742 9m21:A (2.621) BS08 BMA N/A GO:0005576 ... I1NBK5 40994130
    1020743 9m23:A (2.16) BS01 ZN N/A GO:0000122 ... Q9NWT6 N/A
    1020744 9m23:A (2.16) BS02 A1L8D N/A GO:0000122 ... Q9NWT6 N/A
    1020745 9m24:A (1.57) BS01 A1L8K N/A N/A Q14145 41107418
    1020746 9m25:B (2.5) BS01 MG N/A N/A N/A N/A
    1020747 9m26:A (2.5) BS01 CA N/A N/A A0A837FNZ9 40384351
    1020748 9m26:A (2.5) BS02 CA N/A N/A A0A837FNZ9 40384351
    1020749 9m26:A (2.5) BS03 CA N/A N/A A0A837FNZ9 40384351
    1020750 9m26:A (2.5) BS04 CA N/A N/A A0A837FNZ9 40384351
    1020751 9m26:A (2.5) BS05 CA N/A N/A A0A837FNZ9 40384351
    1020752 9m26:B (2.5) BS01 CA N/A N/A A0A837FNZ9 40384351
    1020753 9m26:B (2.5) BS02 CA N/A N/A A0A837FNZ9 40384351
    1020754 9m26:B (2.5) BS03 CA N/A N/A A0A837FNZ9 40384351
    1020755 9m26:B (2.5) BS04 CA N/A N/A A0A837FNZ9 40384351
    1020756 9m26:C (2.5) BS01 CA N/A N/A A0A837FNZ9 40384351
    1020757 9m26:C (2.5) BS02 CA N/A N/A A0A837FNZ9 40384351
    1020758 9m26:D (2.5) BS01 CA N/A N/A A0A837FNZ9 40384351
    1020759 9m26:D (2.5) BS02 CA N/A N/A A0A837FNZ9 40384351
    1020760 9m28:A (2.0) BS01 GTP N/A GO:0003924 ... A0A5B9D832 N/A
    1020761 9m29:A (1.967) BS01 peptide N/A N/A P0DTD1 N/A
    1020762 9m2a:A (3.01) BS01 FE N/A GO:0009916 ... Q26710 40464345
    1020763 9m2a:A (3.01) BS02 FE N/A GO:0009916 ... Q26710 40464345
    1020764 9m2a:A (3.01) BS03 A1L8E N/A GO:0009916 ... Q26710 40464345
    1020765 9m2a:B (3.01) BS01 FE N/A GO:0009916 ... Q26710 40464345
    1020766 9m2a:B (3.01) BS02 FE N/A GO:0009916 ... Q26710 40464345
    1020767 9m2a:C (3.01) BS01 FE N/A GO:0009916 ... Q26710 40464345
    1020768 9m2a:C (3.01) BS02 FE N/A GO:0009916 ... Q26710 40464345
    1020769 9m2a:D (3.01) BS01 FE N/A GO:0009916 ... Q26710 40464345
    1020770 9m2a:D (3.01) BS02 FE N/A GO:0009916 ... Q26710 40464345
    1020771 9m2e:AAA (2.575) BS01 A1D7W N/A N/A P22736 N/A
    1020772 9m2f:R (2.93) BS01 peptide N/A GO:0004930 ... Q9GZQ6 40839429
    1020773 9m2h:A (3.4) BS01 3C4 N/A GO:0001736 ... Q96247 N/A
    1020774 9m2i:A (3.19) BS01 NAP N/A N/A P76558 41197718
    1020775 9m2i:A (3.19) BS02 MG N/A N/A P76558 41197718
    1020776 9m2i:B (3.19) BS01 NAP N/A N/A P76558 41197718
    1020777 9m2i:B (3.19) BS02 MG N/A N/A P76558 41197718
    1020778 9m2j:A (1.82) BS01 PQQ N/A N/A N/A N/A
    1020779 9m2j:A (1.82) BS02 CA N/A N/A N/A N/A
    1020780 9m2k:A (2.63) BS01 PQQ N/A N/A N/A N/A
    1020781 9m2k:A (2.63) BS02 B2S N/A N/A N/A N/A
    1020782 9m2k:A (2.63) BS03 CA N/A N/A N/A N/A
    1020783 9m2l:A (2.55) BS01 CO N/A N/A N/A 41702921
    1020784 9m2l:A (2.55) BS02 A1EMZ N/A N/A N/A 41702921
    1020785 9m2l:A (2.55) BS03 AKG N/A N/A N/A 41702921
    1020786 9m2l:B (2.55) BS01 CO N/A N/A N/A 41702921
    1020787 9m2l:B (2.55) BS02 A1EMZ N/A N/A N/A 41702921
    1020788 9m2l:B (2.55) BS03 AKG N/A N/A N/A 41702921
    1020789 9m2l:C (2.55) BS01 CO N/A N/A N/A 41702921
    1020790 9m2l:C (2.55) BS02 A1EMZ N/A N/A N/A 41702921
    1020791 9m2l:C (2.55) BS03 AKG N/A N/A N/A 41702921
    1020792 9m2l:D (2.55) BS01 CO N/A N/A N/A 41702921
    1020793 9m2l:D (2.55) BS02 A1EMZ N/A N/A N/A 41702921
    1020794 9m2l:D (2.55) BS03 AKG N/A N/A N/A 41702921
    1020795 9m2m:A (2.2) BS01 CO N/A N/A N/A 41702921
    1020796 9m2m:B (2.2) BS01 CO N/A N/A N/A 41702921
    1020797 9m2m:C (2.2) BS01 CO N/A N/A N/A 41702921
    1020798 9m2m:D (2.2) BS01 CO N/A N/A N/A 41702921
    1020799 9m2p:A (3.1) BS01 MN N/A GO:0000105 ... P9WML9 40478632
    1020800 9m2p:A (3.1) BS02 MN N/A GO:0000105 ... P9WML9 40478632

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).