SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1024401 9mlc:B (2.4) BS03 ZN N/A GO:0000781 ... I3LGP4 N/A
    1024402 9mlc:C (2.4) BS01 ZN N/A N/A A0A481DF93 N/A
    1024403 9mlc:I (2.4) BS01 ZN N/A GO:0001193 ... P60899 N/A
    1024404 9mlc:I (2.4) BS02 ZN N/A GO:0001193 ... P60899 N/A
    1024405 9mlc:J (2.4) BS01 ZN N/A GO:0003899 ... A0A8W4F9W9 N/A
    1024406 9mlc:L (2.4) BS01 ZN N/A GO:0001650 ... A0A4X1TRS6 N/A
    1024407 9mlc:S (2.4) BS01 ZN N/A GO:0003711 ... P23193 N/A
    1024408 9mlc:Y (2.4) BS01 ZN N/A GO:0000122 ... P63272 N/A
    1024409 9mlc:Z (2.4) BS01 dna N/A GO:0000122 ... O00267 N/A
    1024410 9mlf:A (2.4) BS01 GTP N/A GO:0000226 ... Q2XVP4 40763661
    1024411 9mlf:A (2.4) BS02 A1BMG N/A GO:0000226 ... Q2XVP4 40763661
    1024412 9mlf:B (2.4) BS01 GDP N/A GO:0003924 ... A0A287AGU7 40763661
    1024413 9mlf:B (2.4) BS02 A1BMG N/A GO:0003924 ... A0A287AGU7 40763661
    1024414 9mlf:C (2.4) BS01 GTP N/A GO:0000226 ... Q2XVP4 40763661
    1024415 9mlf:C (2.4) BS02 A1BMG N/A GO:0000226 ... Q2XVP4 40763661
    1024416 9mlf:D (2.4) BS01 A1BMG N/A GO:0003924 ... A0A287AGU7 40763661
    1024417 9mlf:D (2.4) BS02 GDP N/A GO:0003924 ... A0A287AGU7 40763661
    1024418 9mlj:A (1.6) BS01 A1BMU N/A N/A P0DTD1 N/A
    1024419 9mll:A (3.7) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024420 9mll:A (3.7) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024421 9mll:B (3.7) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024422 9mll:C (3.7) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024423 9mll:C (3.7) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024424 9mll:D (3.7) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024425 9mll:D (3.7) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024426 9mll:E (3.7) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024427 9mll:E (3.7) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024428 9mll:F (3.7) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024429 9mll:F (3.7) BS02 dna N/A GO:0000781 ... P62805 41123210
    1024430 9mll:G (3.7) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024431 9mll:G (3.7) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024432 9mll:H (3.7) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024433 9mll:H (3.7) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024434 9mll:L (3.7) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024435 9mll:L (3.7) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024436 9mll:M (3.7) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024437 9mll:N (3.7) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024438 9mll:N (3.7) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024439 9mll:O (3.7) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024440 9mll:P (3.7) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024441 9mll:P (3.7) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024442 9mll:Q (3.7) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024443 9mll:R (3.7) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024444 9mll:R (3.7) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024445 9mll:S (3.7) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024446 9mll:S (3.7) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024447 9mlm:A (1.79) BS01 NDP N/A GO:0004146 ... A0A4E9FIQ4 40812516
    1024448 9mlm:A (1.79) BS02 OED N/A GO:0004146 ... A0A4E9FIQ4 40812516
    1024449 9mln:A (3.3) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024450 9mln:A (3.3) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024451 9mln:B (3.3) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024452 9mln:C (3.3) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024453 9mln:C (3.3) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024454 9mln:D (3.3) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024455 9mln:D (3.3) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024456 9mln:E (3.3) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024457 9mln:E (3.3) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024458 9mln:F (3.3) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024459 9mln:G (3.3) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024460 9mln:G (3.3) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024461 9mln:H (3.3) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024462 9mln:H (3.3) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024463 9mlo:A (2.64) BS01 A1BMF N/A N/A A0A1M6CXF0 40569382
    1024464 9mlo:A (2.64) BS02 PO4 N/A N/A A0A1M6CXF0 40569382
    1024465 9mlo:B (2.64) BS01 A1BMF N/A N/A A0A1M6CXF0 40569382
    1024466 9mlr:A (3.1) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024467 9mlr:A (3.1) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024468 9mlr:B (3.1) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024469 9mlr:C (3.1) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024470 9mlr:D (3.1) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024471 9mlr:E (3.1) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024472 9mlr:E (3.1) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024473 9mlr:F (3.1) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024474 9mlr:G (3.1) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024475 9mlr:G (3.1) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024476 9mlr:H (3.1) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024477 9mlr:H (3.1) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024478 9mls:A (3.6) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024479 9mls:A (3.6) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024480 9mls:B (3.6) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024481 9mls:B (3.6) BS02 dna N/A GO:0000781 ... P62805 41123210
    1024482 9mls:C (3.6) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024483 9mls:D (3.6) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024484 9mls:E (3.6) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024485 9mls:E (3.6) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024486 9mls:F (3.6) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024487 9mls:F (3.6) BS02 dna N/A GO:0000781 ... P62805 41123210
    1024488 9mls:G (3.6) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024489 9mls:G (3.6) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024490 9mls:H (3.6) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024491 9mls:H (3.6) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024492 9mlt:A (2.105) BS01 NAP N/A GO:0004146 ... A0A4E9FIQ4 40812516
    1024493 9mlt:A (2.105) BS02 OFD N/A GO:0004146 ... A0A4E9FIQ4 40812516
    1024494 9mlw:A (2.21) BS01 A1BMZ N/A N/A P0A953 N/A
    1024495 9mlw:B (2.21) BS01 A1BMZ N/A N/A P0A953 N/A
    1024496 9mly:A (2.33) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024497 9mly:A (2.33) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024498 9mly:B (2.33) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024499 9mly:B (2.33) BS02 CLF N/A GO:0009399 ... P07329 40229244
    1024500 9mly:B (2.33) BS03 FE N/A GO:0009399 ... P07329 40229244
    1024501 9mly:C (2.33) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024502 9mly:C (2.33) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024503 9mly:D (2.33) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024504 9mly:D (2.33) BS02 FE N/A GO:0009399 ... P07329 40229244
    1024505 9mly:D (2.33) BS03 CLF N/A GO:0009399 ... P07329 40229244
    1024506 9mlz:A (2.19) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024507 9mlz:A (2.19) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024508 9mlz:B (2.19) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024509 9mlz:B (2.19) BS02 CLF N/A GO:0009399 ... P07329 40229244
    1024510 9mlz:B (2.19) BS03 FE N/A GO:0009399 ... P07329 40229244
    1024511 9mlz:C (2.19) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024512 9mlz:C (2.19) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024513 9mlz:D (2.19) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024514 9mlz:D (2.19) BS02 FE N/A GO:0009399 ... P07329 40229244
    1024515 9mlz:D (2.19) BS03 CLF N/A GO:0009399 ... P07329 40229244
    1024516 9mm0:A (2.19) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024517 9mm0:A (2.19) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024518 9mm0:B (2.19) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024519 9mm0:B (2.19) BS02 CLF N/A GO:0009399 ... P07329 40229244
    1024520 9mm0:B (2.19) BS03 FE N/A GO:0009399 ... P07329 40229244
    1024521 9mm0:C (2.19) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024522 9mm0:C (2.19) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024523 9mm0:D (2.19) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024524 9mm0:D (2.19) BS02 FE N/A GO:0009399 ... P07329 40229244
    1024525 9mm0:D (2.19) BS03 CLF N/A GO:0009399 ... P07329 40229244
    1024526 9mm1:A (2.08) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024527 9mm1:A (2.08) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024528 9mm1:B (2.08) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024529 9mm1:B (2.08) BS02 CLF N/A GO:0009399 ... P07329 40229244
    1024530 9mm1:B (2.08) BS03 FE N/A GO:0009399 ... P07329 40229244
    1024531 9mm1:C (2.08) BS01 ICS N/A GO:0009399 ... P07328 40229244
    1024532 9mm1:C (2.08) BS02 CLF N/A GO:0009399 ... P07328 40229244
    1024533 9mm1:D (2.08) BS01 FE N/A GO:0009399 ... P07329 40229244
    1024534 9mm1:D (2.08) BS02 FE N/A GO:0009399 ... P07329 40229244
    1024535 9mm1:D (2.08) BS03 CLF N/A GO:0009399 ... P07329 40229244
    1024536 9mm2:A (1.33) BS01 MG N/A GO:0030599 ... A0A1M6G673 40427613
    1024537 9mm2:A (1.33) BS02 MG N/A GO:0030599 ... A0A1M6G673 40427613
    1024538 9mmi:A (1.75) BS01 MG N/A GO:0006020 ... O67791 40147773
    1024539 9mmi:A (1.75) BS02 MG N/A GO:0006020 ... O67791 40147773
    1024540 9mmi:B (1.75) BS01 MG N/A GO:0006020 ... O67791 40147773
    1024541 9mmi:B (1.75) BS02 MG N/A GO:0006020 ... O67791 40147773
    1024542 9mmi:B (1.75) BS03 PO4 N/A GO:0006020 ... O67791 40147773
    1024543 9mmi:C (1.75) BS01 MG N/A GO:0006020 ... O67791 40147773
    1024544 9mmi:C (1.75) BS02 MG N/A GO:0006020 ... O67791 40147773
    1024545 9mmi:D (1.75) BS01 MG N/A GO:0006020 ... O67791 40147773
    1024546 9mmi:D (1.75) BS02 MG N/A GO:0006020 ... O67791 40147773
    1024547 9mmj:A (1.78) BS01 peptide N/A N/A N/A N/A
    1024548 9mmj:B (1.78) BS01 peptide N/A N/A N/A N/A
    1024549 9mmk:A (3.2) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024550 9mmk:A (3.2) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024551 9mmk:B (3.2) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024552 9mmk:C (3.2) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024553 9mmk:C (3.2) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024554 9mmk:E (3.2) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024555 9mmk:E (3.2) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024556 9mmk:F (3.2) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024557 9mmk:G (3.2) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024558 9mmk:G (3.2) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024559 9mmk:H (3.2) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024560 9mmk:H (3.2) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024561 9mmm:A (4.0) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024562 9mmm:A (4.0) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024563 9mmm:B (4.0) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024564 9mmm:C (4.0) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024565 9mmm:C (4.0) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024566 9mmm:E (4.0) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024567 9mmm:E (4.0) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024568 9mmm:F (4.0) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024569 9mmm:G (4.0) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024570 9mmm:G (4.0) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024571 9mmm:H (4.0) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024572 9mmm:H (4.0) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024573 9mmm:L (4.0) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024574 9mmm:L (4.0) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024575 9mmm:M (4.0) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024576 9mmm:N (4.0) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024577 9mmm:N (4.0) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024578 9mmm:P (4.0) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024579 9mmm:P (4.0) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024580 9mmm:Q (4.0) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024581 9mmm:R (4.0) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024582 9mmm:R (4.0) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024583 9mmm:S (4.0) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024584 9mmm:S (4.0) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024585 9mmn:A (3.6) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024586 9mmn:A (3.6) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024587 9mmn:B (3.6) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024588 9mmn:C (3.6) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024589 9mmn:C (3.6) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024590 9mmn:E (3.6) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024591 9mmn:E (3.6) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024592 9mmn:F (3.6) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024593 9mmn:G (3.6) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024594 9mmn:G (3.6) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024595 9mmn:H (3.6) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024596 9mmn:H (3.6) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024597 9mmn:L (3.6) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024598 9mmn:L (3.6) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024599 9mmn:M (3.6) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024600 9mmn:N (3.6) BS01 dna N/A GO:0000077 ... P16104 41123210

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).