SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1024601 9mmn:N (3.6) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024602 9mmn:P (3.6) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024603 9mmn:P (3.6) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024604 9mmn:Q (3.6) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024605 9mmn:R (3.6) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024606 9mmn:R (3.6) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024607 9mmn:S (3.6) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024608 9mmn:S (3.6) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024609 9mmo:A (3.9) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024610 9mmo:A (3.9) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024611 9mmo:B (3.9) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024612 9mmo:C (3.9) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024613 9mmo:C (3.9) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024614 9mmo:D (3.9) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024615 9mmo:D (3.9) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024616 9mmo:E (3.9) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024617 9mmo:E (3.9) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024618 9mmo:F (3.9) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024619 9mmo:G (3.9) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024620 9mmo:G (3.9) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024621 9mmo:H (3.9) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024622 9mmo:H (3.9) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024623 9mmo:L (3.9) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024624 9mmo:L (3.9) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024625 9mmo:M (3.9) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024626 9mmo:N (3.9) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024627 9mmo:N (3.9) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024628 9mmo:O (3.9) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024629 9mmo:O (3.9) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024630 9mmo:P (3.9) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024631 9mmo:P (3.9) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024632 9mmo:Q (3.9) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024633 9mmo:R (3.9) BS01 dna N/A GO:0000077 ... P16104 41123210
    1024634 9mmo:R (3.9) BS02 dna N/A GO:0000077 ... P16104 41123210
    1024635 9mmo:S (3.9) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024636 9mmo:S (3.9) BS02 dna N/A GO:0000786 ... P06899 41123210
    1024637 9mmp:A (3.4) BS01 AGS N/A GO:0000165 ... P04049 40890113
    1024638 9mmp:A (3.4) BS02 ZN N/A GO:0000165 ... P04049 40890113
    1024639 9mmp:A (3.4) BS03 ZN N/A GO:0000165 ... P04049 40890113
    1024640 9mmp:B (3.4) BS01 AGS N/A GO:0000165 ... Q02750 40890113
    1024641 9mmp:B (3.4) BS02 LCJ N/A GO:0000165 ... Q02750 40890113
    1024642 9mmq:A (2.9) BS01 AGS N/A GO:0000165 ... P04049 40890113
    1024643 9mmq:A (2.9) BS02 MG N/A GO:0000165 ... P04049 40890113
    1024644 9mmq:B (2.9) BS01 AGS N/A GO:0000165 ... Q02750 40890113
    1024645 9mmq:B (2.9) BS02 MG N/A GO:0000165 ... Q02750 40890113
    1024646 9mmq:B (2.9) BS03 LCJ N/A GO:0000165 ... Q02750 40890113
    1024647 9mmr:A (3.9) BS01 AGS N/A GO:0000165 ... P04049 40890113
    1024648 9mmr:B (3.9) BS01 AGS N/A GO:0000165 ... Q02750 40890113
    1024649 9mmr:B (3.9) BS02 LCJ N/A GO:0000165 ... Q02750 40890113
    1024650 9mms:A (3.3) BS01 AGS N/A GO:0000165 ... P04049 40890113
    1024651 9mms:A (3.3) BS02 MG N/A GO:0000165 ... P04049 40890113
    1024652 9mms:B (3.3) BS01 AGS N/A GO:0000165 ... Q02750 40890113
    1024653 9mms:B (3.3) BS02 MG N/A GO:0000165 ... Q02750 40890113
    1024654 9mms:B (3.3) BS03 LCJ N/A GO:0000165 ... Q02750 40890113
    1024655 9mmt:A (3.4) BS01 dna N/A GO:0000786 ... P68431 41123210
    1024656 9mmt:A (3.4) BS02 dna N/A GO:0000786 ... P68431 41123210
    1024657 9mmt:F (3.4) BS01 dna N/A GO:0000781 ... P62805 41123210
    1024658 9mmt:H (3.4) BS01 dna N/A GO:0000786 ... P06899 41123210
    1024659 9mmw:A (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024660 9mmw:A (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024661 9mmw:A (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    1024662 9mmw:B (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024663 9mmw:B (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024664 9mmw:B (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    1024665 9mmw:E (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024666 9mmw:E (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024667 9mmw:E (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    1024668 9mmw:F (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024669 9mmw:F (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024670 9mmw:F (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    1024671 9mmw:G (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024672 9mmw:G (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024673 9mmw:G (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    1024674 9mmw:H (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024675 9mmw:H (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    1024676 9mmw:H (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    1024677 9mmy:A (2.7) BS01 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024678 9mmy:A (2.7) BS02 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024679 9mmy:B (2.7) BS01 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024680 9mmy:B (2.7) BS02 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024681 9mmy:C (2.7) BS01 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024682 9mmy:C (2.7) BS02 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024683 9mmy:D (2.7) BS01 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024684 9mmy:D (2.7) BS02 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024685 9mmy:E (2.7) BS01 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024686 9mmy:E (2.7) BS02 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024687 9mmy:F (2.7) BS01 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024688 9mmy:F (2.7) BS02 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024689 9mmy:G (2.7) BS01 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024690 9mmy:G (2.7) BS02 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024691 9mmy:H (2.7) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024692 9mmy:H (2.7) BS02 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024693 9mmy:I (2.7) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024694 9mmy:I (2.7) BS02 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024695 9mmy:J (2.7) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024696 9mmy:J (2.7) BS02 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024697 9mmy:K (2.7) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024698 9mmy:K (2.7) BS02 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024699 9mmy:L (2.7) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024700 9mmy:L (2.7) BS02 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024701 9mmy:M (2.7) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024702 9mmy:M (2.7) BS02 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024703 9mmy:N (2.7) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024704 9mmy:N (2.7) BS02 ATP N/A GO:0000287 ... P0A6F5 N/A
    1024705 9mn0:A (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024706 9mn0:B (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024707 9mn0:C (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024708 9mn0:D (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024709 9mn0:E (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024710 9mn0:F (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024711 9mn0:G (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024712 9mn0:H (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024713 9mn0:I (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024714 9mn0:J (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024715 9mn0:K (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024716 9mn0:L (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024717 9mn0:M (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024718 9mn0:N (3.0) BS01 A1AS6 N/A GO:0000287 ... P0A6F5 N/A
    1024719 9mn1:A (2.4) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024720 9mn1:B (2.4) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024721 9mn1:C (2.4) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024722 9mn1:D (2.4) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024723 9mn1:E (2.4) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024724 9mn1:F (2.4) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024725 9mn1:G (2.4) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024726 9mn1:H (2.4) BS01 ADP N/A GO:0005524 ... Q548M1 N/A
    1024727 9mn1:I (2.4) BS01 ADP N/A GO:0005524 ... Q548M1 N/A
    1024728 9mn1:J (2.4) BS01 ADP N/A GO:0005524 ... Q548M1 N/A
    1024729 9mn1:K (2.4) BS01 ADP N/A GO:0005524 ... Q548M1 N/A
    1024730 9mn1:L (2.4) BS01 ADP N/A GO:0005524 ... Q548M1 N/A
    1024731 9mn1:M (2.4) BS01 ADP N/A GO:0005524 ... Q548M1 N/A
    1024732 9mn1:N (2.4) BS01 ADP N/A GO:0005524 ... Q548M1 N/A
    1024733 9mn3:C (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024734 9mn3:H (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024735 9mn3:I (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024736 9mn3:J (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024737 9mn3:K (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024738 9mn3:L (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024739 9mn3:M (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024740 9mn3:N (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024741 9mn3:O (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024742 9mn3:P (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024743 9mn3:R (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024744 9mn3:S (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024745 9mn3:T (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024746 9mn3:U (2.9) BS01 ATP N/A GO:0005524 ... Q548M1 N/A
    1024747 9mn4:A (3.05) BS01 dna N/A GO:0001018 ... Q00059 40712587
    1024748 9mn4:A (3.05) BS02 dna N/A GO:0001018 ... Q00059 40712587
    1024749 9mn4:B (3.05) BS01 dna N/A GO:0000154 ... Q9H5Q4 40712587
    1024750 9mn4:B (3.05) BS02 dna N/A GO:0000154 ... Q9H5Q4 40712587
    1024751 9mn4:E (3.05) BS01 dna N/A GO:0000175 ... O00411 40712587
    1024752 9mn4:E (3.05) BS02 rna N/A GO:0000175 ... O00411 40712587
    1024753 9mn4:E (3.05) BS03 dna N/A GO:0000175 ... O00411 40712587
    1024754 9mn5:A (3.04) BS01 dna N/A GO:0001018 ... Q00059 40712587
    1024755 9mn5:A (3.04) BS02 dna N/A GO:0001018 ... Q00059 40712587
    1024756 9mn5:B (3.04) BS01 dna N/A GO:0000154 ... Q9H5Q4 40712587
    1024757 9mn5:E (3.04) BS01 dna N/A GO:0000175 ... O00411 40712587
    1024758 9mn5:E (3.04) BS02 dna N/A GO:0000175 ... O00411 40712587
    1024759 9mn6:B (2.71) BS01 dna N/A GO:0000154 ... Q9H5Q4 40712587
    1024760 9mn6:B (2.71) BS02 dna N/A GO:0000154 ... Q9H5Q4 40712587
    1024761 9mn6:E (2.71) BS01 dna N/A GO:0000175 ... O00411 40712587
    1024762 9mn6:E (2.71) BS02 rna N/A GO:0000175 ... O00411 40712587
    1024763 9mn6:E (2.71) BS03 dna N/A GO:0000175 ... O00411 40712587
    1024764 9mn6:E (2.71) BS04 ATP N/A GO:0000175 ... O00411 40712587
    1024765 9mn6:E (2.71) BS05 MG N/A GO:0000175 ... O00411 40712587
    1024766 9mn7:B (2.65) BS01 dna N/A GO:0000154 ... Q9H5Q4 40712587
    1024767 9mn7:B (2.65) BS02 dna N/A GO:0000154 ... Q9H5Q4 40712587
    1024768 9mn7:E (2.65) BS01 dna N/A GO:0000175 ... O00411 40712587
    1024769 9mn7:E (2.65) BS02 rna N/A GO:0000175 ... O00411 40712587
    1024770 9mn7:E (2.65) BS03 dna N/A GO:0000175 ... O00411 40712587
    1024771 9mn7:E (2.65) BS04 ATP N/A GO:0000175 ... O00411 40712587
    1024772 9mn7:E (2.65) BS05 MG N/A GO:0000175 ... O00411 40712587
    1024773 9mn8:E (2.69) BS01 dna N/A GO:0000175 ... O00411 40712587
    1024774 9mn8:E (2.69) BS02 dna N/A GO:0000175 ... O00411 40712587
    1024775 9mn8:E (2.69) BS03 rna N/A GO:0000175 ... O00411 40712587
    1024776 9mn8:E (2.69) BS04 ATP N/A GO:0000175 ... O00411 40712587
    1024777 9mn9:E (2.74) BS01 dna N/A GO:0000175 ... O00411 40712587
    1024778 9mn9:E (2.74) BS02 rna N/A GO:0000175 ... O00411 40712587
    1024779 9mn9:E (2.74) BS03 dna N/A GO:0000175 ... O00411 40712587
    1024780 9mn9:E (2.74) BS04 CH1 N/A GO:0000175 ... O00411 40712587
    1024781 9mn9:E (2.74) BS05 MG N/A GO:0000175 ... O00411 40712587
    1024782 9mna:B (3.77) BS01 dna N/A GO:0002082 ... Q96QE5 40712587
    1024783 9mna:E (3.77) BS01 dna N/A GO:0000175 ... O00411 40712587
    1024784 9mna:E (3.77) BS02 dna N/A GO:0000175 ... O00411 40712587
    1024785 9mna:E (3.77) BS03 rna N/A GO:0000175 ... O00411 40712587
    1024786 9mna:E (3.77) BS04 MG N/A GO:0000175 ... O00411 40712587
    1024787 9mna:E (3.77) BS05 ATP N/A GO:0000175 ... O00411 40712587
    1024788 9mnd:A (2.4) BS01 FUC N/A GO:0005452 ... P02730 41298479
    1024789 9mnd:A (2.4) BS02 PIO N/A GO:0005452 ... P02730 41298479
    1024790 9mnd:A (2.4) BS03 PIO N/A GO:0005452 ... P02730 41298479
    1024791 9mnd:C (2.4) BS01 FUC N/A GO:0005452 ... P02730 41298479
    1024792 9mnd:C (2.4) BS02 PIO N/A GO:0005452 ... P02730 41298479
    1024793 9mnd:C (2.4) BS03 PIO N/A GO:0005452 ... P02730 41298479
    1024794 9mng:B (3.11) BS01 PIO N/A GO:0005452 ... P02730 41298479
    1024795 9mng:B (3.11) BS02 PIO N/A GO:0005452 ... P02730 41298479
    1024796 9mng:C (3.11) BS01 FUC N/A GO:0005452 ... P02730 41298479
    1024797 9mng:C (3.11) BS02 PIO N/A GO:0005452 ... P02730 41298479
    1024798 9mng:C (3.11) BS03 PIO N/A GO:0005452 ... P02730 41298479
    1024799 9mnm:A (3.5) BS01 QNG N/A N/A P12493 N/A
    1024800 9mnm:B (3.5) BS01 QNG N/A N/A P12493 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).