SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1025001 9mor:D (2.65) BS02 MG N/A GO:0001070 ... P60723 39829893
    1025002 9mor:E (2.65) BS01 rna N/A GO:0000027 ... P62399 39829893
    1025003 9mor:E (2.65) BS02 rna N/A GO:0000027 ... P62399 39829893
    1025004 9mor:E (2.65) BS03 rna N/A GO:0000027 ... P62399 39829893
    1025005 9mor:F (2.65) BS01 rna N/A GO:0000027 ... P0AG55 39829893
    1025006 9mor:G (2.65) BS01 rna N/A GO:0002181 ... P0A7R1 39829893
    1025007 9mor:H (2.65) BS01 rna N/A GO:0002181 ... P0A7J3 39829893
    1025008 9mor:I (2.65) BS01 rna N/A GO:0000027 ... P0A7J7 39829893
    1025009 9mor:J (2.65) BS01 rna N/A GO:0002181 ... P0AA10 39829893
    1025010 9mor:K (2.65) BS01 rna N/A GO:0002181 ... P0ADY3 39829893
    1025011 9mor:K (2.65) BS02 rna N/A GO:0002181 ... P0ADY3 39829893
    1025012 9mor:L (2.65) BS01 rna N/A GO:0002181 ... P02413 39829893
    1025013 9mor:L (2.65) BS02 MG N/A GO:0002181 ... P02413 39829893
    1025014 9mor:M (2.65) BS01 rna N/A GO:0000027 ... P0ADY7 39829893
    1025015 9mor:M (2.65) BS02 rna N/A GO:0000027 ... P0ADY7 39829893
    1025016 9mor:N (2.65) BS01 rna N/A GO:0000027 ... P0AG44 39829893
    1025017 9mor:N (2.65) BS02 MG N/A GO:0000027 ... P0AG44 39829893
    1025018 9mor:O (2.65) BS01 rna N/A GO:0002181 ... P0C018 39829893
    1025019 9mor:O (2.65) BS02 rna N/A GO:0002181 ... P0C018 39829893
    1025020 9mor:P (2.65) BS01 rna N/A GO:0000027 ... P0A7K6 39829893
    1025021 9mor:P (2.65) BS02 rna N/A GO:0000027 ... P0A7K6 39829893
    1025022 9mor:Q (2.65) BS01 rna N/A GO:0000027 ... P0A7L3 39829893
    1025023 9mor:R (2.65) BS01 rna N/A GO:0002181 ... P0AG48 39829893
    1025024 9mor:S (2.65) BS01 rna N/A GO:0002181 ... P61175 39829893
    1025025 9mor:T (2.65) BS01 rna N/A GO:0000027 ... P0ADZ0 39829893
    1025026 9mor:U (2.65) BS01 rna N/A GO:0000027 ... P60624 39829893
    1025027 9mor:V (2.65) BS01 rna N/A GO:0000027 ... P68919 39829893
    1025028 9mor:W (2.65) BS01 rna N/A GO:0000027 ... P0A7L8 39829893
    1025029 9mor:W (2.65) BS02 rna N/A GO:0000027 ... P0A7L8 39829893
    1025030 9mor:X (2.65) BS01 rna N/A GO:0000027 ... P0A7M2 39829893
    1025031 9mor:Y (2.65) BS01 rna N/A GO:0000027 ... P0A7M6 39829893
    1025032 9mor:Z (2.65) BS01 rna N/A GO:0000027 ... P0AG51 39829893
    1025033 9mor:Z (2.65) BS02 rna N/A GO:0000027 ... P0AG51 39829893
    1025034 9mor:a (2.65) BS01 rna N/A GO:0002181 ... P0A7M9 39829893
    1025035 9mor:a (2.65) BS02 ZN N/A GO:0002181 ... P0A7M9 39829893
    1025036 9mor:b (2.65) BS01 rna N/A GO:0000027 ... P0A7N4 39829893
    1025037 9mor:b (2.65) BS02 MG N/A GO:0000027 ... P0A7N4 39829893
    1025038 9mor:c (2.65) BS01 rna N/A GO:0000027 ... P0A7N9 39829893
    1025039 9mor:d (2.65) BS01 rna N/A GO:0002181 ... P0A7P5 39829893
    1025040 9mor:e (2.65) BS01 rna N/A GO:0002181 ... P0A7Q1 39829893
    1025041 9mor:f (2.65) BS01 rna N/A GO:0002181 ... P0A7Q6 39829893
    1025042 9mor:f (2.65) BS02 ZN N/A GO:0002181 ... P0A7Q6 39829893
    1025043 9mor:g (2.65) BS01 rna N/A GO:0000028 ... P0A7V0 39829893
    1025044 9mor:h (2.65) BS01 rna N/A GO:0000028 ... P0A7V3 39829893
    1025045 9mor:h (2.65) BS02 rna N/A GO:0000028 ... P0A7V3 39829893
    1025046 9mor:i (2.65) BS01 rna N/A GO:0000028 ... P0A7V8 39829893
    1025047 9mor:j (2.65) BS01 rna N/A GO:0000028 ... P0A7W1 39829893
    1025048 9mor:k (2.65) BS01 rna N/A GO:0002181 ... P02358 39829893
    1025049 9mor:l (2.65) BS01 rna N/A GO:0000028 ... P02359 39829893
    1025050 9mor:l (2.65) BS02 rna N/A GO:0000028 ... P02359 39829893
    1025051 9mor:m (2.65) BS01 rna N/A GO:0000028 ... P0A7W7 39829893
    1025052 9mor:n (2.65) BS01 rna N/A GO:0002181 ... P0A7X3 39829893
    1025053 9mor:n (2.65) BS02 rna N/A GO:0002181 ... P0A7X3 39829893
    1025054 9mor:o (2.65) BS01 rna N/A GO:0000049 ... P0A7R5 39829893
    1025055 9mor:p (2.65) BS01 rna N/A GO:0002181 ... P0A7R9 39829893
    1025056 9mor:q (2.65) BS01 rna N/A GO:0000049 ... P0A7S3 39829893
    1025057 9mor:r (2.65) BS01 rna N/A GO:0000049 ... P0A7S9 39829893
    1025058 9mor:r (2.65) BS02 rna N/A GO:0000049 ... P0A7S9 39829893
    1025059 9mor:s (2.65) BS01 rna N/A GO:0000028 ... P0AG59 39829893
    1025060 9mor:s (2.65) BS02 MG N/A GO:0000028 ... P0AG59 39829893
    1025061 9mor:t (2.65) BS01 rna N/A GO:0000028 ... P0ADZ4 39829893
    1025062 9mor:t (2.65) BS02 rna N/A GO:0000028 ... P0ADZ4 39829893
    1025063 9mor:u (2.65) BS01 rna N/A GO:0000028 ... P0A7T3 39829893
    1025064 9mor:v (2.65) BS01 rna N/A GO:0000028 ... P0AG63 39829893
    1025065 9mor:w (2.65) BS01 rna N/A GO:0002181 ... P0A7T7 39829893
    1025066 9mor:x (2.65) BS01 rna N/A GO:0002181 ... P0A7U3 39829893
    1025067 9mor:y (2.65) BS01 rna N/A GO:0000028 ... P0A7U7 39829893
    1025068 9mor:z (2.65) BS01 rna N/A GO:0000028 ... P68679 39829893
    1025069 9mos:A (2.88) BS01 FUC N/A GO:0005452 ... P02730 41298479
    1025070 9mos:A (2.88) BS02 PIO N/A GO:0005452 ... P02730 41298479
    1025071 9mos:A (2.88) BS03 PIO N/A GO:0005452 ... P02730 41298479
    1025072 9mos:C (2.88) BS01 FUC N/A GO:0005452 ... P02730 41298479
    1025073 9mos:C (2.88) BS02 PIO N/A GO:0005452 ... P02730 41298479
    1025074 9mos:C (2.88) BS03 PIO N/A GO:0005452 ... P02730 41298479
    1025075 9mou:A (5.6) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025076 9mou:B (5.6) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025077 9mou:C (5.6) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025078 9mou:D (5.6) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025079 9mou:E (5.6) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025080 9mou:F (5.6) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025081 9mou:G (5.6) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025082 9mou:H (5.6) BS01 CA N/A GO:0002086 ... P19123 40412797
    1025083 9mou:H (5.6) BS02 CA N/A GO:0002086 ... P19123 40412797
    1025084 9mou:H (5.6) BS03 CA N/A GO:0002086 ... P19123 40412797
    1025085 9mov:C (3.0) BS01 CA N/A GO:0005509 ... P04070 40324068
    1025086 9mov:C (3.0) BS02 CA N/A GO:0005509 ... P04070 40324068
    1025087 9mov:C (3.0) BS03 CA N/A GO:0005509 ... P04070 40324068
    1025088 9mov:C (3.0) BS04 CA N/A GO:0005509 ... P04070 40324068
    1025089 9mov:C (3.0) BS05 CA N/A GO:0005509 ... P04070 40324068
    1025090 9mov:C (3.0) BS06 CA N/A GO:0005509 ... P04070 40324068
    1025091 9mow:A (4.9) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025092 9mow:B (4.9) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025093 9mow:C (4.9) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025094 9mow:D (4.9) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025095 9mow:E (4.9) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025096 9mow:F (4.9) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025097 9mow:G (4.9) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025098 9mow:H (4.9) BS01 CA N/A GO:0002086 ... P19123 40412797
    1025099 9mow:H (4.9) BS02 CA N/A GO:0002086 ... P19123 40412797
    1025100 9mow:H (4.9) BS03 CA N/A GO:0002086 ... P19123 40412797
    1025101 9mox:A (5.2) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025102 9mox:B (5.2) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025103 9mox:C (5.2) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025104 9mox:D (5.2) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025105 9mox:E (5.2) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025106 9mox:F (5.2) BS01 ADP N/A GO:0000146 ... P68033 40412797
    1025107 9mox:G (5.2) BS01 CA N/A GO:0002086 ... P19123 40412797
    1025108 9mox:G (5.2) BS02 CA N/A GO:0002086 ... P19123 40412797
    1025109 9mox:G (5.2) BS03 CA N/A GO:0002086 ... P19123 40412797
    1025110 9mp0:L (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025111 9mp0:L (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025112 9mp0:L (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025113 9mp0:L (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025114 9mp0:M (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025115 9mp0:M (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025116 9mp0:M (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025117 9mp0:M (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025118 9mp0:N (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025119 9mp0:N (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025120 9mp0:N (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025121 9mp0:N (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025122 9mp0:O (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025123 9mp0:O (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025124 9mp0:O (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025125 9mp0:O (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025126 9mp0:P (3.66) BS01 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025127 9mp0:P (3.66) BS02 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025128 9mp0:P (3.66) BS03 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025129 9mp0:Q (3.66) BS01 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025130 9mp0:Q (3.66) BS02 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025131 9mp0:Q (3.66) BS03 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025132 9mp0:R (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025133 9mp0:R (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025134 9mp0:R (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025135 9mp0:R (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025136 9mp0:S (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025137 9mp0:S (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025138 9mp0:S (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025139 9mp0:S (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025140 9mp0:T (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025141 9mp0:T (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025142 9mp0:T (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025143 9mp0:T (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025144 9mp0:U (3.66) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025145 9mp0:U (3.66) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025146 9mp0:U (3.66) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025147 9mp0:U (3.66) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025148 9mp2:A (1.35) BS01 A1BM9 N/A GO:0005319 ... P15090 40575325
    1025149 9mpo:A (3.62) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025150 9mpo:A (3.62) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025151 9mpo:A (3.62) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025152 9mpo:A (3.62) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025153 9mpo:B (3.62) BS01 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025154 9mpo:C (3.62) BS01 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025155 9mpo:D (3.62) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025156 9mpo:D (3.62) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025157 9mpo:D (3.62) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025158 9mpo:D (3.62) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025159 9mpo:E (3.62) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025160 9mpo:E (3.62) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025161 9mpo:E (3.62) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025162 9mpo:E (3.62) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025163 9mpo:F (3.62) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025164 9mpo:F (3.62) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025165 9mpo:F (3.62) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025166 9mpo:F (3.62) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025167 9mpp:A (3.1) BS01 dna N/A GO:0000786 ... P84233 41174279
    1025168 9mpp:A (3.1) BS02 dna N/A GO:0000786 ... P84233 41174279
    1025169 9mpp:B (3.1) BS01 dna N/A GO:0000786 ... P62799 41174279
    1025170 9mpp:B (3.1) BS02 dna N/A GO:0000786 ... P62799 41174279
    1025171 9mpp:C (3.1) BS01 dna N/A GO:0000786 ... P06897 41174279
    1025172 9mpp:C (3.1) BS02 dna N/A GO:0000786 ... P06897 41174279
    1025173 9mpp:D (3.1) BS01 dna N/A GO:0000786 ... P02281 41174279
    1025174 9mpp:D (3.1) BS02 dna N/A GO:0000786 ... P02281 41174279
    1025175 9mpp:E (3.1) BS01 dna N/A GO:0000786 ... P84233 41174279
    1025176 9mpp:E (3.1) BS02 dna N/A GO:0000786 ... P84233 41174279
    1025177 9mpp:F (3.1) BS01 dna N/A GO:0000786 ... P62799 41174279
    1025178 9mpp:F (3.1) BS02 dna N/A GO:0000786 ... P62799 41174279
    1025179 9mpp:G (3.1) BS01 dna N/A GO:0000786 ... P06897 41174279
    1025180 9mpp:G (3.1) BS02 dna N/A GO:0000786 ... P06897 41174279
    1025181 9mpp:H (3.1) BS01 dna N/A GO:0000786 ... P02281 41174279
    1025182 9mpp:H (3.1) BS02 dna N/A GO:0000786 ... P02281 41174279
    1025183 9mpp:K (3.1) BS01 dna N/A GO:0008168 ... Q9Y6K1 41174279
    1025184 9mpp:K (3.1) BS02 dna N/A GO:0008168 ... Q9Y6K1 41174279
    1025185 9mpp:K (3.1) BS03 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025186 9mpp:M (3.1) BS01 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025187 9mpp:M (3.1) BS02 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025188 9mpp:M (3.1) BS03 ZN N/A GO:0008168 ... Q9Y6K1 41174279
    1025189 9mpp:M (3.1) BS04 SAH N/A GO:0008168 ... Q9Y6K1 41174279
    1025190 9mpp:N (3.1) BS01 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025191 9mpp:N (3.1) BS02 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025192 9mpp:N (3.1) BS03 ZN N/A GO:0000792 ... Q9UJW3 41174279
    1025193 9mpy:A (1.58) BS01 I75 N/A N/A Q2G771 40840623
    1025194 9mpy:B (1.58) BS01 I75 N/A N/A Q2G771 40840623
    1025195 9mq4:A (2.78) BS01 rna N/A GO:0003747 ... A0ACD6B9P7 39829893
    1025196 9mq4:A (2.78) BS02 rna N/A GO:0003747 ... A0ACD6B9P7 39829893
    1025197 9mq4:A (2.78) BS03 rna N/A GO:0003747 ... A0ACD6B9P7 39829893
    1025198 9mq4:A (2.78) BS04 MG N/A GO:0003747 ... A0ACD6B9P7 39829893
    1025199 9mq4:B (2.78) BS01 rna N/A GO:0000027 ... P60422 39829893
    1025200 9mq4:C (2.78) BS01 rna N/A GO:0000027 ... P60438 39829893

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).