SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1025201 9mq4:D (2.78) BS01 rna N/A GO:0001070 ... P60723 39829893
    1025202 9mq4:E (2.78) BS01 rna N/A GO:0000027 ... P62399 39829893
    1025203 9mq4:E (2.78) BS02 rna N/A GO:0000027 ... P62399 39829893
    1025204 9mq4:E (2.78) BS03 rna N/A GO:0000027 ... P62399 39829893
    1025205 9mq4:F (2.78) BS01 rna N/A GO:0000027 ... P0AG55 39829893
    1025206 9mq4:G (2.78) BS01 rna N/A GO:0002181 ... P0A7R1 39829893
    1025207 9mq4:H (2.78) BS01 rna N/A GO:0002181 ... P0A7J3 39829893
    1025208 9mq4:I (2.78) BS01 rna N/A GO:0000027 ... P0A7J7 39829893
    1025209 9mq4:J (2.78) BS01 rna N/A GO:0002181 ... P0AA10 39829893
    1025210 9mq4:K (2.78) BS01 rna N/A GO:0002181 ... P0ADY3 39829893
    1025211 9mq4:K (2.78) BS02 rna N/A GO:0002181 ... P0ADY3 39829893
    1025212 9mq4:L (2.78) BS01 rna N/A GO:0002181 ... P02413 39829893
    1025213 9mq4:M (2.78) BS01 rna N/A GO:0000027 ... P0ADY7 39829893
    1025214 9mq4:M (2.78) BS02 rna N/A GO:0000027 ... P0ADY7 39829893
    1025215 9mq4:N (2.78) BS01 rna N/A GO:0000027 ... P0AG44 39829893
    1025216 9mq4:O (2.78) BS01 rna N/A GO:0002181 ... P0C018 39829893
    1025217 9mq4:O (2.78) BS02 rna N/A GO:0002181 ... P0C018 39829893
    1025218 9mq4:P (2.78) BS01 rna N/A GO:0000027 ... P0A7K6 39829893
    1025219 9mq4:P (2.78) BS02 rna N/A GO:0000027 ... P0A7K6 39829893
    1025220 9mq4:Q (2.78) BS01 rna N/A GO:0000027 ... P0A7L3 39829893
    1025221 9mq4:R (2.78) BS01 rna N/A GO:0002181 ... P0AG48 39829893
    1025222 9mq4:S (2.78) BS01 rna N/A GO:0002181 ... P61175 39829893
    1025223 9mq4:T (2.78) BS01 rna N/A GO:0000027 ... P0ADZ0 39829893
    1025224 9mq4:U (2.78) BS01 rna N/A GO:0000027 ... P60624 39829893
    1025225 9mq4:V (2.78) BS01 rna N/A GO:0000027 ... P68919 39829893
    1025226 9mq4:V (2.78) BS02 rna N/A GO:0000027 ... P68919 39829893
    1025227 9mq4:W (2.78) BS01 rna N/A GO:0000027 ... P0A7L8 39829893
    1025228 9mq4:W (2.78) BS02 rna N/A GO:0000027 ... P0A7L8 39829893
    1025229 9mq4:X (2.78) BS01 rna N/A GO:0000027 ... P0A7M2 39829893
    1025230 9mq4:Y (2.78) BS01 rna N/A GO:0000027 ... P0A7M6 39829893
    1025231 9mq4:Z (2.78) BS01 rna N/A GO:0000027 ... P0AG51 39829893
    1025232 9mq4:Z (2.78) BS02 rna N/A GO:0000027 ... P0AG51 39829893
    1025233 9mq4:a (2.78) BS01 rna N/A GO:0002181 ... P0A7M9 39829893
    1025234 9mq4:a (2.78) BS02 rna N/A GO:0002181 ... P0A7M9 39829893
    1025235 9mq4:a (2.78) BS03 ZN N/A GO:0002181 ... P0A7M9 39829893
    1025236 9mq4:b (2.78) BS01 rna N/A GO:0000027 ... P0A7N4 39829893
    1025237 9mq4:c (2.78) BS01 rna N/A GO:0000027 ... P0A7N9 39829893
    1025238 9mq4:d (2.78) BS01 rna N/A GO:0002181 ... P0A7P5 39829893
    1025239 9mq4:e (2.78) BS01 rna N/A GO:0002181 ... P0A7Q1 39829893
    1025240 9mq4:f (2.78) BS01 rna N/A GO:0002181 ... P0A7Q6 39829893
    1025241 9mq4:f (2.78) BS02 ZN N/A GO:0002181 ... P0A7Q6 39829893
    1025242 9mq4:g (2.78) BS01 rna N/A GO:0000028 ... P0A7V0 39829893
    1025243 9mq4:h (2.78) BS01 rna N/A GO:0000028 ... P0A7V3 39829893
    1025244 9mq4:i (2.78) BS01 rna N/A GO:0000028 ... P0A7V8 39829893
    1025245 9mq4:i (2.78) BS02 MG N/A GO:0000028 ... P0A7V8 39829893
    1025246 9mq4:j (2.78) BS01 rna N/A GO:0000028 ... P0A7W1 39829893
    1025247 9mq4:k (2.78) BS01 rna N/A GO:0002181 ... P02358 39829893
    1025248 9mq4:l (2.78) BS01 rna N/A GO:0000028 ... P02359 39829893
    1025249 9mq4:l (2.78) BS02 rna N/A GO:0000028 ... P02359 39829893
    1025250 9mq4:m (2.78) BS01 rna N/A GO:0000028 ... P0A7W7 39829893
    1025251 9mq4:n (2.78) BS01 rna N/A GO:0002181 ... P0A7X3 39829893
    1025252 9mq4:n (2.78) BS02 rna N/A GO:0002181 ... P0A7X3 39829893
    1025253 9mq4:o (2.78) BS01 rna N/A GO:0000049 ... P0A7R5 39829893
    1025254 9mq4:p (2.78) BS01 rna N/A GO:0002181 ... P0A7R9 39829893
    1025255 9mq4:q (2.78) BS01 rna N/A GO:0000049 ... P0A7S3 39829893
    1025256 9mq4:r (2.78) BS01 rna N/A GO:0000049 ... P0A7S9 39829893
    1025257 9mq4:r (2.78) BS02 rna N/A GO:0000049 ... P0A7S9 39829893
    1025258 9mq4:r (2.78) BS03 MG N/A GO:0000049 ... P0A7S9 39829893
    1025259 9mq4:s (2.78) BS01 rna N/A GO:0000028 ... P0AG59 39829893
    1025260 9mq4:t (2.78) BS01 rna N/A GO:0000028 ... P0ADZ4 39829893
    1025261 9mq4:t (2.78) BS02 rna N/A GO:0000028 ... P0ADZ4 39829893
    1025262 9mq4:u (2.78) BS01 rna N/A GO:0000028 ... P0A7T3 39829893
    1025263 9mq4:v (2.78) BS01 rna N/A GO:0000028 ... P0AG63 39829893
    1025264 9mq4:w (2.78) BS01 rna N/A GO:0002181 ... P0A7T7 39829893
    1025265 9mq4:x (2.78) BS01 rna N/A GO:0002181 ... P0A7U3 39829893
    1025266 9mq4:y (2.78) BS01 rna N/A GO:0000028 ... P0A7U7 39829893
    1025267 9mq4:z (2.78) BS01 rna N/A GO:0000028 ... P68679 39829893
    1025268 9mq6:A (3.3) BS01 ADP N/A GO:0000153 ... P55072 40085114
    1025269 9mq6:A (3.3) BS02 ANP N/A GO:0000153 ... P55072 40085114
    1025270 9mq6:B (3.3) BS01 ADP N/A GO:0000153 ... P55072 40085114
    1025271 9mq6:B (3.3) BS02 ANP N/A GO:0000153 ... P55072 40085114
    1025272 9mqb:A (3.37) BS01 A1AVC N/A GO:0005788 ... P38435 40890294
    1025273 9mqc:A (3.13) BS01 A1AVC N/A GO:0005788 ... P38435 40890294
    1025274 9mqe:A (3.56) BS01 A1AVC N/A GO:0005788 ... P38435 40890294
    1025275 9mqi:A (3.3) BS01 A1BNM N/A GO:0001965 ... P35372 39868130
    1025276 9mqj:A (3.23) BS01 A1BNM N/A GO:0001965 ... P35372 39868130
    1025277 9mqk:A (3.18) BS01 A1BNM N/A GO:0004930 ... P41145 39868130
    1025278 9mqk:B (3.18) BS01 A1BNM N/A GO:0004930 ... P41145 39868130
    1025279 9mql:A (2.96) BS01 A1BNM N/A GO:0004930 ... P41145 39868130
    1025280 9mqp:A (2.15) BS01 A1BNN N/A N/A F8W4B7 39957581
    1025281 9mqp:A (2.15) BS02 ZN N/A N/A F8W4B7 39957581
    1025282 9mqp:B (2.15) BS01 A1BNN N/A N/A F8W4B7 39957581
    1025283 9mqp:B (2.15) BS02 ZN N/A N/A F8W4B7 39957581
    1025284 9mqv:A (2.2) BS01 CA N/A GO:0004308 ... A0A193ACB1 41053391
    1025285 9mqw:A (2.29) BS01 CA N/A GO:0004308 ... A0A193ACB1 41053391
    1025286 9mqx:A (3.0) BS01 SF4 N/A GO:0051536 ... I4BTZ0 40694326
    1025287 9mqx:A (3.0) BS02 SF4 N/A GO:0051536 ... I4BTZ0 40694326
    1025288 9mqx:A (3.0) BS03 FES N/A GO:0051536 ... I4BTZ0 40694326
    1025289 9mqx:A (3.0) BS04 ZN N/A GO:0051536 ... I4BTZ0 40694326
    1025290 9mqx:B (3.0) BS01 SF4 N/A GO:0008137 ... I4BTY9 40694326
    1025291 9mqx:B (3.0) BS02 FMN N/A GO:0008137 ... I4BTY9 40694326
    1025292 9mqx:B (3.0) BS03 NAI N/A GO:0008137 ... I4BTY9 40694326
    1025293 9mqx:B (3.0) BS04 FES N/A GO:0008137 ... I4BTY9 40694326
    1025294 9mqx:B (3.0) BS05 ZN N/A GO:0008137 ... I4BTY9 40694326
    1025295 9mqx:B (3.0) BS06 SF4 N/A GO:0008137 ... I4BTY9 40694326
    1025296 9mqx:B (3.0) BS07 SF4 N/A GO:0008137 ... I4BTY9 40694326
    1025297 9mqx:C (3.0) BS01 FES N/A GO:0016491 ... I4BTY8 40694326
    1025298 9mqx:D (3.0) BS01 SF4 N/A GO:0009055 ... I4BTZ2 40694326
    1025299 9mqx:D (3.0) BS02 PTE N/A GO:0009055 ... I4BTZ2 40694326
    1025300 9mqx:D (3.0) BS03 MG N/A GO:0009055 ... I4BTZ2 40694326
    1025301 9mqx:E (3.0) BS01 SF4 N/A N/A I4BTZ1 40694326
    1025302 9mqx:E (3.0) BS02 SF4 N/A N/A I4BTZ1 40694326
    1025303 9mqx:E (3.0) BS03 SF4 N/A N/A I4BTZ1 40694326
    1025304 9mqx:E (3.0) BS04 SF4 N/A N/A I4BTZ1 40694326
    1025305 9mqx:F (3.0) BS01 SF4 N/A GO:0009055 ... I4BTZ2 40694326
    1025306 9mqx:F (3.0) BS02 PTE N/A GO:0009055 ... I4BTZ2 40694326
    1025307 9mqx:G (3.0) BS01 SF4 N/A N/A I4BTZ1 40694326
    1025308 9mqx:G (3.0) BS02 SF4 N/A N/A I4BTZ1 40694326
    1025309 9mqx:G (3.0) BS03 SF4 N/A N/A I4BTZ1 40694326
    1025310 9mqx:G (3.0) BS04 SF4 N/A N/A I4BTZ1 40694326
    1025311 9mqx:H (3.0) BS01 SF4 N/A GO:0009055 ... I4BTZ2 40694326
    1025312 9mqx:H (3.0) BS02 PTE N/A GO:0009055 ... I4BTZ2 40694326
    1025313 9mqx:I (3.0) BS01 SF4 N/A N/A I4BTZ1 40694326
    1025314 9mqx:I (3.0) BS02 SF4 N/A N/A I4BTZ1 40694326
    1025315 9mqx:I (3.0) BS03 SF4 N/A N/A I4BTZ1 40694326
    1025316 9mqx:I (3.0) BS04 SF4 N/A N/A I4BTZ1 40694326
    1025317 9mqy:A (3.0) BS01 FAD N/A GO:0003954 ... P95160 40117195
    1025318 9mqy:B (3.0) BS01 FAD N/A GO:0003954 ... P95160 40117195
    1025319 9mqz:A (3.0) BS01 FAD N/A GO:0003954 ... P95160 40117195
    1025320 9mqz:A (3.0) BS02 A1BNR N/A GO:0003954 ... P95160 40117195
    1025321 9mqz:B (3.0) BS01 FAD N/A GO:0003954 ... P95160 40117195
    1025322 9mqz:B (3.0) BS02 A1BNR N/A GO:0003954 ... P95160 40117195
    1025323 9mr4:0 (2.65) BS01 rna N/A GO:0003735 ... G1SK22 40766658
    1025324 9mr4:6 (2.65) BS01 rna N/A GO:0001891 ... G1SJB4 40766658
    1025325 9mr4:9 (2.65) BS01 rna N/A GO:0002181 ... G1U7M4 40766658
    1025326 9mr4:A (2.65) BS01 rna N/A GO:0002181 ... G1TT27 40766658
    1025327 9mr4:A (2.65) BS02 rna N/A GO:0002181 ... G1TT27 40766658
    1025328 9mr4:A (2.65) BS03 MG N/A GO:0002181 ... G1TT27 40766658
    1025329 9mr4:AA (2.65) BS01 rna N/A GO:0003735 ... G1T8A2 40766658
    1025330 9mr4:B (2.65) BS01 rna N/A GO:0003723 ... G1TL06 40766658
    1025331 9mr4:BB (2.65) BS01 rna N/A GO:0003735 ... G1SVB0 40766658
    1025332 9mr4:C (2.65) BS01 rna N/A GO:0003735 ... G1SVW5 40766658
    1025333 9mr4:C (2.65) BS02 rna N/A GO:0003735 ... G1SVW5 40766658
    1025334 9mr4:CC (2.65) BS01 rna N/A GO:0003735 ... G1TJW1 40766658
    1025335 9mr4:CC (2.65) BS02 rna N/A GO:0003735 ... G1TJW1 40766658
    1025336 9mr4:D (2.65) BS01 rna N/A GO:0000027 ... P19949 40766658
    1025337 9mr4:D (2.65) BS02 rna N/A GO:0000027 ... P19949 40766658
    1025338 9mr4:DD (2.65) BS01 rna N/A GO:0003723 ... B7NZS8 40766658
    1025339 9mr4:E (2.65) BS01 rna N/A GO:0000027 ... G1SKF7 40766658
    1025340 9mr4:EE (2.65) BS01 rna N/A GO:0003735 ... G1TRM4 40766658
    1025341 9mr4:EE (2.65) BS02 MG N/A GO:0003735 ... G1TRM4 40766658
    1025342 9mr4:EF (2.65) BS01 rna N/A N/A P20290 40766658
    1025343 9mr4:EH (2.65) BS01 rna N/A N/A N/A 40766658
    1025344 9mr4:F (2.65) BS01 rna N/A GO:0000463 ... G1SV32 40766658
    1025345 9mr4:F (2.65) BS02 rna N/A GO:0000463 ... G1SV32 40766658
    1025346 9mr4:FF (2.65) BS01 rna N/A GO:0000028 ... G1TIB4 40766658
    1025347 9mr4:G (2.65) BS01 rna N/A GO:0003723 ... G1STW0 40766658
    1025348 9mr4:G (2.65) BS02 rna N/A GO:0003723 ... G1STW0 40766658
    1025349 9mr4:GG (2.65) BS01 rna N/A GO:0003723 ... G1SIZ2 40766658
    1025350 9mr4:H (2.65) BS01 rna N/A GO:0002181 ... G1SWI6 40766658
    1025351 9mr4:I (2.65) BS01 rna N/A GO:0003735 ... B7NZQ2 40766658
    1025352 9mr4:I (2.65) BS02 rna N/A GO:0003735 ... B7NZQ2 40766658
    1025353 9mr4:II (2.65) BS01 rna N/A GO:0003676 ... G1TPG3 40766658
    1025354 9mr4:J (2.65) BS01 rna N/A GO:0003735 ... G1TUB8 40766658
    1025355 9mr4:J (2.65) BS02 rna N/A GO:0003735 ... G1TUB8 40766658
    1025356 9mr4:J (2.65) BS03 rna N/A GO:0003735 ... G1TUB8 40766658
    1025357 9mr4:JJ (2.65) BS01 rna N/A GO:0003735 ... G1TZ76 40766658
    1025358 9mr4:KK (2.65) BS01 rna N/A GO:0003735 ... G1TU13 40766658
    1025359 9mr4:L (2.65) BS01 rna N/A GO:0003723 ... G1TKB3 40766658
    1025360 9mr4:L (2.65) BS02 rna N/A GO:0003723 ... G1TKB3 40766658
    1025361 9mr4:LL (2.65) BS01 rna N/A GO:0003729 ... G1TFE8 40766658
    1025362 9mr4:LL (2.65) BS02 ZN N/A GO:0003729 ... G1TFE8 40766658
    1025363 9mr4:M (2.65) BS01 rna N/A GO:0003723 ... G1SZ12 40766658
    1025364 9mr4:MM (2.65) BS01 rna N/A GO:0003735 ... G1T1F0 40766658
    1025365 9mr4:N (2.65) BS01 rna N/A GO:0002181 ... G1T0C1 40766658
    1025366 9mr4:N (2.65) BS02 rna N/A GO:0002181 ... G1T0C1 40766658
    1025367 9mr4:NN (2.65) BS01 rna N/A GO:0003735 ... A0A5F9D2E6 40766658
    1025368 9mr4:O (2.65) BS01 rna N/A GO:0003729 ... G1TVS8 40766658
    1025369 9mr4:OO (2.65) BS01 rna N/A GO:0003735 ... G1TDB3 40766658
    1025370 9mr4:P (2.65) BS01 rna N/A GO:0002181 ... G1SCJ6 40766658
    1025371 9mr4:P (2.65) BS02 rna N/A GO:0002181 ... G1SCJ6 40766658
    1025372 9mr4:PP (2.65) BS01 rna N/A GO:0000028 ... G1TN62 40766658
    1025373 9mr4:Q (2.65) BS01 rna N/A GO:0003723 ... G1TFE0 40766658
    1025374 9mr4:QQ (2.65) BS01 rna N/A GO:0003735 ... G1SP51 40766658
    1025375 9mr4:QQ (2.65) BS02 rna N/A GO:0003735 ... G1SP51 40766658
    1025376 9mr4:R (2.65) BS01 rna N/A GO:0003723 ... G1TYL6 40766658
    1025377 9mr4:R (2.65) BS02 rna N/A GO:0003723 ... G1TYL6 40766658
    1025378 9mr4:RR (2.65) BS01 rna N/A GO:0003735 ... G1SFR8 40766658
    1025379 9mr4:S (2.65) BS01 rna N/A GO:0003735 ... G1TTY7 40766658
    1025380 9mr4:S (2.65) BS02 rna N/A GO:0003735 ... G1TTY7 40766658
    1025381 9mr4:SS (2.65) BS01 rna N/A GO:0003723 ... G1TPV3 40766658
    1025382 9mr4:T (2.65) BS01 rna N/A GO:0003735 ... G1SHQ2 40766658
    1025383 9mr4:T (2.65) BS02 rna N/A GO:0003735 ... G1SHQ2 40766658
    1025384 9mr4:TT (2.65) BS01 rna N/A GO:0003735 ... G1TG89 40766658
    1025385 9mr4:U (2.65) BS01 rna N/A GO:0002181 ... G1TSG1 40766658
    1025386 9mr4:UU (2.65) BS01 rna N/A GO:0000462 ... G1SGX4 40766658
    1025387 9mr4:V (2.65) BS01 rna N/A GO:0000122 ... G1T6D1 40766658
    1025388 9mr4:VV (2.65) BS01 rna N/A GO:0003735 ... G1SZ47 40766658
    1025389 9mr4:W (2.65) BS01 rna N/A GO:0002181 ... G1SE28 40766658
    1025390 9mr4:WW (2.65) BS01 rna N/A GO:0000028 ... G1U0Q2 40766658
    1025391 9mr4:X (2.65) BS01 rna N/A GO:0003735 ... G1SE76 40766658
    1025392 9mr4:X (2.65) BS02 rna N/A GO:0003735 ... G1SE76 40766658
    1025393 9mr4:Y (2.65) BS01 rna N/A GO:0003723 ... G1SQH0 40766658
    1025394 9mr4:Y (2.65) BS02 rna N/A GO:0003723 ... G1SQH0 40766658
    1025395 9mr4:Z (2.65) BS01 rna N/A GO:0002181 ... G1TXF6 40766658
    1025396 9mr4:a (2.65) BS01 rna N/A GO:0003735 ... G1SNY0 40766658
    1025397 9mr4:b (2.65) BS01 rna N/A GO:0002181 ... G1SGR6 40766658
    1025398 9mr4:c (2.65) BS01 rna N/A GO:0003723 ... G1TDL2 40766658
    1025399 9mr4:d (2.65) BS01 rna N/A GO:0002181 ... G1SHG0 40766658
    1025400 9mr4:e (2.65) BS01 rna N/A GO:0003735 ... G1TUN8 40766658

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).