SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1026201 9mtq:2w (2.55) BS02 rna N/A GO:0003747 ... P96077 40536958
    1026202 9mtq:2w (2.55) BS03 rna N/A GO:0003747 ... P96077 40536958
    1026203 9mtq:2w (2.55) BS04 rna N/A GO:0003747 ... P96077 40536958
    1026204 9mtq:2w (2.55) BS05 peptide N/A GO:0003747 ... P96077 40536958
    1026205 9mtq:2w (2.55) BS06 MG N/A GO:0003747 ... P96077 40536958
    1026206 9mtr:10 (2.8) BS01 rna N/A GO:0003735 ... P60493 40536958
    1026207 9mtr:10 (2.8) BS02 rna N/A GO:0003735 ... P60493 40536958
    1026208 9mtr:10 (2.8) BS03 MG N/A GO:0003735 ... P60493 40536958
    1026209 9mtr:10 (2.8) BS04 MG N/A GO:0003735 ... P60493 40536958
    1026210 9mtr:11 (2.8) BS01 rna N/A GO:0003735 ... P60494 40536958
    1026211 9mtr:11 (2.8) BS02 MG N/A GO:0003735 ... P60494 40536958
    1026212 9mtr:12 (2.8) BS01 rna N/A GO:0003735 ... Q5SHP6 40536958
    1026213 9mtr:12 (2.8) BS02 MG N/A GO:0003735 ... Q5SHP6 40536958
    1026214 9mtr:12 (2.8) BS03 MG N/A GO:0003735 ... Q5SHP6 40536958
    1026215 9mtr:13 (2.8) BS01 rna N/A GO:0003735 ... Q5SHQ6 40536958
    1026216 9mtr:13 (2.8) BS02 rna N/A GO:0003735 ... Q5SHQ6 40536958
    1026217 9mtr:13 (2.8) BS03 MG N/A GO:0003735 ... Q5SHQ6 40536958
    1026218 9mtr:13 (2.8) BS04 MG N/A GO:0003735 ... Q5SHQ6 40536958
    1026219 9mtr:14 (2.8) BS01 rna N/A GO:0003735 ... Q5SJE1 40536958
    1026220 9mtr:14 (2.8) BS02 ZN N/A GO:0003735 ... Q5SJE1 40536958
    1026221 9mtr:15 (2.8) BS01 rna N/A GO:0003735 ... P80339 40536958
    1026222 9mtr:15 (2.8) BS02 MG N/A GO:0003735 ... P80339 40536958
    1026223 9mtr:15 (2.8) BS03 MG N/A GO:0003735 ... P80339 40536958
    1026224 9mtr:15 (2.8) BS04 ZN N/A GO:0003735 ... P80339 40536958
    1026225 9mtr:16 (2.8) BS01 rna N/A GO:0003735 ... P35871 40536958
    1026226 9mtr:16 (2.8) BS02 MG N/A GO:0003735 ... P35871 40536958
    1026227 9mtr:16 (2.8) BS03 ZN N/A GO:0003735 ... P35871 40536958
    1026228 9mtr:17 (2.8) BS01 rna N/A GO:0003735 ... P80340 40536958
    1026229 9mtr:17 (2.8) BS02 MG N/A GO:0003735 ... P80340 40536958
    1026230 9mtr:17 (2.8) BS03 MG N/A GO:0003735 ... P80340 40536958
    1026231 9mtr:18 (2.8) BS01 rna N/A GO:0003735 ... Q5SKU1 40536958
    1026232 9mtr:18 (2.8) BS02 MG N/A GO:0003735 ... Q5SKU1 40536958
    1026233 9mtr:18 (2.8) BS03 MG N/A GO:0003735 ... Q5SKU1 40536958
    1026234 9mtr:18 (2.8) BS04 MG N/A GO:0003735 ... Q5SKU1 40536958
    1026235 9mtr:18 (2.8) BS05 MG N/A GO:0003735 ... Q5SKU1 40536958
    1026236 9mtr:19 (2.8) BS01 rna N/A GO:0003735 ... Q5SHR2 40536958
    1026237 9mtr:19 (2.8) BS02 ZN N/A GO:0003735 ... Q5SHR2 40536958
    1026238 9mtr:1D (2.8) BS01 rna N/A GO:0002181 ... P60405 40536958
    1026239 9mtr:1D (2.8) BS02 rna N/A GO:0002181 ... P60405 40536958
    1026240 9mtr:1D (2.8) BS03 MG N/A GO:0002181 ... P60405 40536958
    1026241 9mtr:1D (2.8) BS04 MG N/A GO:0002181 ... P60405 40536958
    1026242 9mtr:1D (2.8) BS05 MG N/A GO:0002181 ... P60405 40536958
    1026243 9mtr:1D (2.8) BS06 MG N/A GO:0002181 ... P60405 40536958
    1026244 9mtr:1D (2.8) BS07 MG N/A GO:0002181 ... P60405 40536958
    1026245 9mtr:1D (2.8) BS08 MG N/A GO:0002181 ... P60405 40536958
    1026246 9mtr:1D (2.8) BS09 MG N/A GO:0002181 ... P60405 40536958
    1026247 9mtr:1D (2.8) BS10 MG N/A GO:0002181 ... P60405 40536958
    1026248 9mtr:1D (2.8) BS11 MG N/A GO:0002181 ... P60405 40536958
    1026249 9mtr:1D (2.8) BS12 MG N/A GO:0002181 ... P60405 40536958
    1026250 9mtr:1D (2.8) BS13 MG N/A GO:0002181 ... P60405 40536958
    1026251 9mtr:1D (2.8) BS14 MG N/A GO:0002181 ... P60405 40536958
    1026252 9mtr:1E (2.8) BS01 rna N/A GO:0003735 ... Q5SHN8 40536958
    1026253 9mtr:1E (2.8) BS02 MG N/A GO:0003735 ... Q5SHN8 40536958
    1026254 9mtr:1E (2.8) BS03 MG N/A GO:0003735 ... Q5SHN8 40536958
    1026255 9mtr:1E (2.8) BS04 MG N/A GO:0003735 ... Q5SHN8 40536958
    1026256 9mtr:1E (2.8) BS05 MG N/A GO:0003735 ... Q5SHN8 40536958
    1026257 9mtr:1F (2.8) BS01 rna N/A GO:0003735 ... Q5SHN9 40536958
    1026258 9mtr:1F (2.8) BS02 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026259 9mtr:1F (2.8) BS03 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026260 9mtr:1F (2.8) BS04 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026261 9mtr:1F (2.8) BS05 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026262 9mtr:1F (2.8) BS06 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026263 9mtr:1F (2.8) BS07 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026264 9mtr:1F (2.8) BS08 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026265 9mtr:1F (2.8) BS09 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026266 9mtr:1G (2.8) BS01 rna N/A GO:0000049 ... Q5SHQ0 40536958
    1026267 9mtr:1G (2.8) BS02 rna N/A GO:0000049 ... Q5SHQ0 40536958
    1026268 9mtr:1G (2.8) BS03 rna N/A GO:0000049 ... Q5SHQ0 40536958
    1026269 9mtr:1G (2.8) BS04 MG N/A GO:0000049 ... Q5SHQ0 40536958
    1026270 9mtr:1G (2.8) BS05 MG N/A GO:0000049 ... Q5SHQ0 40536958
    1026271 9mtr:1H (2.8) BS01 rna N/A GO:0002181 ... P0DOY8 40536958
    1026272 9mtr:1I (2.8) BS01 rna N/A GO:0003735 ... Q5SLQ1 40536958
    1026273 9mtr:1I (2.8) BS02 MG N/A GO:0003735 ... Q5SLQ1 40536958
    1026274 9mtr:1N (2.8) BS01 rna N/A GO:0003729 ... P60488 40536958
    1026275 9mtr:1N (2.8) BS02 MG N/A GO:0003729 ... P60488 40536958
    1026276 9mtr:1N (2.8) BS03 MG N/A GO:0003729 ... P60488 40536958
    1026277 9mtr:1N (2.8) BS04 MG N/A GO:0003729 ... P60488 40536958
    1026278 9mtr:1N (2.8) BS05 MG N/A GO:0003729 ... P60488 40536958
    1026279 9mtr:1O (2.8) BS01 rna N/A GO:0003735 ... Q5SHP8 40536958
    1026280 9mtr:1O (2.8) BS02 rna N/A GO:0003735 ... Q5SHP8 40536958
    1026281 9mtr:1O (2.8) BS03 MG N/A GO:0003735 ... Q5SHP8 40536958
    1026282 9mtr:1O (2.8) BS04 MG N/A GO:0003735 ... Q5SHP8 40536958
    1026283 9mtr:1P (2.8) BS01 rna N/A GO:0003735 ... Q5SHQ7 40536958
    1026284 9mtr:1P (2.8) BS02 MG N/A GO:0003735 ... Q5SHQ7 40536958
    1026285 9mtr:1P (2.8) BS03 MG N/A GO:0003735 ... Q5SHQ7 40536958
    1026286 9mtr:1P (2.8) BS04 MG N/A GO:0003735 ... Q5SHQ7 40536958
    1026287 9mtr:1P (2.8) BS05 MG N/A GO:0003735 ... Q5SHQ7 40536958
    1026288 9mtr:1Q (2.8) BS01 rna N/A GO:0003735 ... P60489 40536958
    1026289 9mtr:1Q (2.8) BS02 rna N/A GO:0003735 ... P60489 40536958
    1026290 9mtr:1Q (2.8) BS03 MG N/A GO:0003735 ... P60489 40536958
    1026291 9mtr:1Q (2.8) BS04 MG N/A GO:0003735 ... P60489 40536958
    1026292 9mtr:1Q (2.8) BS05 MG N/A GO:0003735 ... P60489 40536958
    1026293 9mtr:1Q (2.8) BS06 MG N/A GO:0003735 ... P60489 40536958
    1026294 9mtr:1Q (2.8) BS07 MG N/A GO:0003735 ... P60489 40536958
    1026295 9mtr:1R (2.8) BS01 rna N/A GO:0003735 ... Q9Z9H5 40536958
    1026296 9mtr:1S (2.8) BS01 rna N/A GO:0003735 ... Q5SHQ4 40536958
    1026297 9mtr:1S (2.8) BS02 rna N/A GO:0003735 ... Q5SHQ4 40536958
    1026298 9mtr:1S (2.8) BS03 MG N/A GO:0003735 ... Q5SHQ4 40536958
    1026299 9mtr:1S (2.8) BS04 MG N/A GO:0003735 ... Q5SHQ4 40536958
    1026300 9mtr:1T (2.8) BS01 rna N/A GO:0003735 ... P60490 40536958
    1026301 9mtr:1T (2.8) BS02 rna N/A GO:0003735 ... P60490 40536958
    1026302 9mtr:1U (2.8) BS01 rna N/A GO:0000027 ... P60491 40536958
    1026303 9mtr:1U (2.8) BS02 MG N/A GO:0000027 ... P60491 40536958
    1026304 9mtr:1U (2.8) BS03 MG N/A GO:0000027 ... P60491 40536958
    1026305 9mtr:1U (2.8) BS04 MG N/A GO:0000027 ... P60491 40536958
    1026306 9mtr:1U (2.8) BS05 MG N/A GO:0000027 ... P60491 40536958
    1026307 9mtr:1U (2.8) BS06 MG N/A GO:0000027 ... P60491 40536958
    1026308 9mtr:1U (2.8) BS07 MG N/A GO:0000027 ... P60491 40536958
    1026309 9mtr:1U (2.8) BS08 MG N/A GO:0000027 ... P60491 40536958
    1026310 9mtr:1U (2.8) BS09 MG N/A GO:0000027 ... P60491 40536958
    1026311 9mtr:1U (2.8) BS10 MG N/A GO:0000027 ... P60491 40536958
    1026312 9mtr:1U (2.8) BS11 MG N/A GO:0000027 ... P60491 40536958
    1026313 9mtr:1V (2.8) BS01 rna N/A GO:0003723 ... P60492 40536958
    1026314 9mtr:1V (2.8) BS02 MG N/A GO:0003723 ... P60492 40536958
    1026315 9mtr:1V (2.8) BS03 MG N/A GO:0003723 ... P60492 40536958
    1026316 9mtr:1V (2.8) BS04 MG N/A GO:0003723 ... P60492 40536958
    1026317 9mtr:1V (2.8) BS05 MG N/A GO:0003723 ... P60492 40536958
    1026318 9mtr:1V (2.8) BS06 MG N/A GO:0003723 ... P60492 40536958
    1026319 9mtr:1V (2.8) BS07 MG N/A GO:0003723 ... P60492 40536958
    1026320 9mtr:1W (2.8) BS01 rna N/A GO:0003735 ... Q5SHP3 40536958
    1026321 9mtr:1W (2.8) BS02 MG N/A GO:0003735 ... Q5SHP3 40536958
    1026322 9mtr:1W (2.8) BS03 MG N/A GO:0003735 ... Q5SHP3 40536958
    1026323 9mtr:1W (2.8) BS04 MG N/A GO:0003735 ... Q5SHP3 40536958
    1026324 9mtr:1W (2.8) BS05 MG N/A GO:0003735 ... Q5SHP3 40536958
    1026325 9mtr:1X (2.8) BS01 rna N/A GO:0003735 ... Q5SHP0 40536958
    1026326 9mtr:1X (2.8) BS02 MG N/A GO:0003735 ... Q5SHP0 40536958
    1026327 9mtr:1X (2.8) BS03 MG N/A GO:0003735 ... Q5SHP0 40536958
    1026328 9mtr:1X (2.8) BS04 MG N/A GO:0003735 ... Q5SHP0 40536958
    1026329 9mtr:1X (2.8) BS05 MG N/A GO:0003735 ... Q5SHP0 40536958
    1026330 9mtr:1Y (2.8) BS01 rna N/A GO:0003723 ... Q5SHP9 40536958
    1026331 9mtr:1Y (2.8) BS02 MG N/A GO:0003723 ... Q5SHP9 40536958
    1026332 9mtr:1Y (2.8) BS03 ZN N/A GO:0003723 ... Q5SHP9 40536958
    1026333 9mtr:1Z (2.8) BS01 rna N/A GO:0003723 ... Q5SHZ1 40536958
    1026334 9mtr:1Z (2.8) BS02 rna N/A GO:0003723 ... Q5SHZ1 40536958
    1026335 9mtr:1b (2.8) BS01 rna N/A GO:0003735 ... P80371 40536958
    1026336 9mtr:1b (2.8) BS02 MG N/A GO:0003735 ... P80371 40536958
    1026337 9mtr:1b (2.8) BS03 MG N/A GO:0003735 ... P80371 40536958
    1026338 9mtr:1c (2.8) BS01 rna N/A GO:0003676 ... P80372 40536958
    1026339 9mtr:1d (2.8) BS01 rna N/A GO:0003723 ... P80373 40536958
    1026340 9mtr:1d (2.8) BS02 SF4 N/A GO:0003723 ... P80373 40536958
    1026341 9mtr:1e (2.8) BS01 rna N/A GO:0003723 ... Q5SHQ5 40536958
    1026342 9mtr:1e (2.8) BS02 MG N/A GO:0003723 ... Q5SHQ5 40536958
    1026343 9mtr:1e (2.8) BS03 MG N/A GO:0003723 ... Q5SHQ5 40536958
    1026344 9mtr:1f (2.8) BS01 rna N/A GO:0003735 ... Q5SLP8 40536958
    1026345 9mtr:1g (2.8) BS01 rna N/A GO:0000049 ... P17291 40536958
    1026346 9mtr:1h (2.8) BS01 rna N/A GO:0003735 ... P0DOY9 40536958
    1026347 9mtr:1i (2.8) BS01 rna N/A GO:0003723 ... P80374 40536958
    1026348 9mtr:1i (2.8) BS02 rna N/A GO:0003723 ... P80374 40536958
    1026349 9mtr:1j (2.8) BS01 rna N/A GO:0000049 ... Q5SHN7 40536958
    1026350 9mtr:1k (2.8) BS01 rna N/A GO:0003735 ... P80376 40536958
    1026351 9mtr:1k (2.8) BS02 MG N/A GO:0003735 ... P80376 40536958
    1026352 9mtr:1l (2.8) BS01 rna N/A GO:0000049 ... Q5SHN3 40536958
    1026353 9mtr:1m (2.8) BS01 rna N/A GO:0000049 ... P80377 40536958
    1026354 9mtr:1m (2.8) BS02 rna N/A GO:0000049 ... P80377 40536958
    1026355 9mtr:1m (2.8) BS03 rna N/A GO:0000049 ... P80377 40536958
    1026356 9mtr:1m (2.8) BS04 MG N/A GO:0000049 ... P80377 40536958
    1026357 9mtr:1n (2.8) BS01 rna N/A GO:0003735 ... P0DOY6 40536958
    1026358 9mtr:1n (2.8) BS02 ZN N/A GO:0003735 ... P0DOY6 40536958
    1026359 9mtr:1o (2.8) BS01 rna N/A GO:0003735 ... Q5SJ76 40536958
    1026360 9mtr:1o (2.8) BS02 rna N/A GO:0003735 ... Q5SJ76 40536958
    1026361 9mtr:1p (2.8) BS01 rna N/A GO:0003735 ... Q5SJH3 40536958
    1026362 9mtr:1q (2.8) BS01 rna N/A GO:0003735 ... P0DOY7 40536958
    1026363 9mtr:1r (2.8) BS01 rna N/A GO:0003735 ... Q5SLQ0 40536958
    1026364 9mtr:1s (2.8) BS01 rna N/A GO:0000028 ... Q5SHP2 40536958
    1026365 9mtr:1t (2.8) BS01 rna N/A GO:0003723 ... P80380 40536958
    1026366 9mtr:1w (2.8) BS01 rna N/A GO:0003747 ... P96077 40536958
    1026367 9mtr:1w (2.8) BS02 rna N/A GO:0003747 ... P96077 40536958
    1026368 9mtr:1w (2.8) BS03 rna N/A GO:0003747 ... P96077 40536958
    1026369 9mtr:1w (2.8) BS04 rna N/A GO:0003747 ... P96077 40536958
    1026370 9mtr:1w (2.8) BS05 MG N/A GO:0003747 ... P96077 40536958
    1026371 9mtr:1w (2.8) BS06 MG N/A GO:0003747 ... P96077 40536958
    1026372 9mtr:20 (2.8) BS01 rna N/A GO:0003735 ... P60493 40536958
    1026373 9mtr:20 (2.8) BS02 rna N/A GO:0003735 ... P60493 40536958
    1026374 9mtr:21 (2.8) BS01 rna N/A GO:0003735 ... P60494 40536958
    1026375 9mtr:21 (2.8) BS02 MG N/A GO:0003735 ... P60494 40536958
    1026376 9mtr:22 (2.8) BS01 rna N/A GO:0003735 ... Q5SHP6 40536958
    1026377 9mtr:23 (2.8) BS01 rna N/A GO:0003735 ... Q5SHQ6 40536958
    1026378 9mtr:23 (2.8) BS02 rna N/A GO:0003735 ... Q5SHQ6 40536958
    1026379 9mtr:23 (2.8) BS03 MG N/A GO:0003735 ... Q5SHQ6 40536958
    1026380 9mtr:24 (2.8) BS01 rna N/A GO:0003735 ... Q5SJE1 40536958
    1026381 9mtr:24 (2.8) BS02 ZN N/A GO:0003735 ... Q5SJE1 40536958
    1026382 9mtr:25 (2.8) BS01 rna N/A GO:0003735 ... P80339 40536958
    1026383 9mtr:25 (2.8) BS02 ZN N/A GO:0003735 ... P80339 40536958
    1026384 9mtr:26 (2.8) BS01 rna N/A GO:0003735 ... P35871 40536958
    1026385 9mtr:26 (2.8) BS02 ZN N/A GO:0003735 ... P35871 40536958
    1026386 9mtr:27 (2.8) BS01 rna N/A GO:0003735 ... P80340 40536958
    1026387 9mtr:27 (2.8) BS02 MG N/A GO:0003735 ... P80340 40536958
    1026388 9mtr:28 (2.8) BS01 rna N/A GO:0003735 ... Q5SKU1 40536958
    1026389 9mtr:29 (2.8) BS01 rna N/A GO:0003735 ... Q5SHR2 40536958
    1026390 9mtr:29 (2.8) BS02 ZN N/A GO:0003735 ... Q5SHR2 40536958
    1026391 9mtr:2D (2.8) BS01 rna N/A GO:0002181 ... P60405 40536958
    1026392 9mtr:2D (2.8) BS02 rna N/A GO:0002181 ... P60405 40536958
    1026393 9mtr:2D (2.8) BS03 MG N/A GO:0002181 ... P60405 40536958
    1026394 9mtr:2D (2.8) BS04 MG N/A GO:0002181 ... P60405 40536958
    1026395 9mtr:2D (2.8) BS05 MG N/A GO:0002181 ... P60405 40536958
    1026396 9mtr:2D (2.8) BS06 MG N/A GO:0002181 ... P60405 40536958
    1026397 9mtr:2E (2.8) BS01 rna N/A GO:0003735 ... Q5SHN8 40536958
    1026398 9mtr:2F (2.8) BS01 rna N/A GO:0003735 ... Q5SHN9 40536958
    1026399 9mtr:2F (2.8) BS02 MG N/A GO:0003735 ... Q5SHN9 40536958
    1026400 9mtr:2F (2.8) BS03 MG N/A GO:0003735 ... Q5SHN9 40536958

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).