SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1027001 9mty:A (3.05) BS04 dna N/A GO:0003677 ... A0ACD6BAH6 40014690
    1027002 9mty:B (3.05) BS01 rna N/A GO:0003677 ... A0ACD6BAH6 40014690
    1027003 9mty:B (3.05) BS02 dna N/A GO:0003677 ... A0ACD6BAH6 40014690
    1027004 9mty:B (3.05) BS03 dna N/A GO:0003677 ... A0ACD6BAH6 40014690
    1027005 9mty:B (3.05) BS04 dna N/A GO:0003677 ... A0ACD6BAH6 40014690
    1027006 9mu2:E (3.54) BS01 peptide N/A N/A A4ZFB9 40174589
    1027007 9mu2:K (3.54) BS01 peptide N/A N/A A4ZFB9 40174589
    1027008 9mu2:P (3.54) BS01 dna N/A N/A A4ZFB7 40174589
    1027009 9mu2:P (3.54) BS02 dna N/A N/A A4ZFB7 40174589
    1027010 9mu2:W (3.54) BS01 peptide N/A N/A A4ZFB9 40174589
    1027011 9mu2:c (3.54) BS01 peptide N/A N/A A4ZFB9 40174589
    1027012 9mu2:i (3.54) BS01 peptide N/A N/A A4ZFB9 40174589
    1027013 9mu2:o (3.54) BS01 peptide N/A N/A A4ZFB9 40174589
    1027014 9mu3:E (3.14) BS01 peptide N/A N/A A4ZFB9 40174589
    1027015 9mu4:a (3.29) BS01 dna N/A GO:0000786 ... P02299 N/A
    1027016 9mu4:a (3.29) BS02 dna N/A GO:0000786 ... P02299 N/A
    1027017 9mu4:b (3.29) BS01 dna N/A GO:0003677 ... P84040 N/A
    1027018 9mu4:b (3.29) BS02 dna N/A GO:0003677 ... P84040 N/A
    1027019 9mu4:c (3.29) BS01 dna N/A GO:0000786 ... P84051 N/A
    1027020 9mu4:c (3.29) BS02 dna N/A GO:0000786 ... P84051 N/A
    1027021 9mu4:d (3.29) BS01 dna N/A GO:0000786 ... P02283 N/A
    1027022 9mu4:d (3.29) BS02 dna N/A GO:0000786 ... P02283 N/A
    1027023 9mu4:e (3.29) BS01 dna N/A GO:0000786 ... P02299 N/A
    1027024 9mu4:e (3.29) BS02 dna N/A GO:0000786 ... P02299 N/A
    1027025 9mu4:f (3.29) BS01 dna N/A GO:0003677 ... P84040 N/A
    1027026 9mu4:f (3.29) BS02 dna N/A GO:0003677 ... P84040 N/A
    1027027 9mu4:g (3.29) BS01 dna N/A GO:0000786 ... P84051 N/A
    1027028 9mu4:g (3.29) BS02 dna N/A GO:0000786 ... P84051 N/A
    1027029 9mu4:h (3.29) BS01 dna N/A GO:0000786 ... P02283 N/A
    1027030 9mu4:h (3.29) BS02 dna N/A GO:0000786 ... P02283 N/A
    1027031 9mu5:a (6.3) BS01 dna N/A GO:0000786 ... P02299 N/A
    1027032 9mu5:a (6.3) BS02 dna N/A GO:0000786 ... P02299 N/A
    1027033 9mu5:b (6.3) BS01 dna N/A GO:0003677 ... P84040 N/A
    1027034 9mu5:b (6.3) BS02 dna N/A GO:0003677 ... P84040 N/A
    1027035 9mu5:e (6.3) BS01 dna N/A GO:0000786 ... P02299 N/A
    1027036 9mu5:e (6.3) BS02 dna N/A GO:0000786 ... P02299 N/A
    1027037 9mu5:f (6.3) BS01 dna N/A GO:0003677 ... P84040 N/A
    1027038 9mu5:f (6.3) BS02 dna N/A GO:0003677 ... P84040 N/A
    1027039 9mu5:g (6.3) BS01 dna N/A GO:0000786 ... P84051 N/A
    1027040 9mu5:g (6.3) BS02 dna N/A GO:0000786 ... P84051 N/A
    1027041 9mu5:h (6.3) BS01 dna N/A GO:0000786 ... P02283 N/A
    1027042 9mu5:h (6.3) BS02 dna N/A GO:0000786 ... P02283 N/A
    1027043 9mu7:A (3.44) BS01 rna N/A N/A P04052 N/A
    1027044 9mu7:A (3.44) BS02 dna N/A N/A P04052 N/A
    1027045 9mu7:A (3.44) BS03 dna N/A N/A P04052 N/A
    1027046 9mu7:A (3.44) BS04 ZN N/A N/A P04052 N/A
    1027047 9mu7:A (3.44) BS05 ZN N/A N/A P04052 N/A
    1027048 9mu7:B (3.44) BS01 rna N/A GO:0003899 ... P08266 N/A
    1027049 9mu7:B (3.44) BS02 dna N/A GO:0003899 ... P08266 N/A
    1027050 9mu7:B (3.44) BS03 ZN N/A GO:0003899 ... P08266 N/A
    1027051 9mu7:C (3.44) BS01 ZN N/A GO:0003899 ... O97183 N/A
    1027052 9mu7:E (3.44) BS01 dna N/A GO:0003899 ... Q7JZF5 N/A
    1027053 9mu7:I (3.44) BS01 ZN N/A GO:0000278 ... P36958 N/A
    1027054 9mu7:I (3.44) BS02 ZN N/A GO:0000278 ... P36958 N/A
    1027055 9mu7:J (3.44) BS01 ZN N/A GO:0003899 ... Q9VC49 N/A
    1027056 9mu7:L (3.44) BS01 ZN N/A N/A Q6IGE3 N/A
    1027057 9mu8:A (3.37) BS01 rna N/A GO:0003677 ... P04052 N/A
    1027058 9mu8:A (3.37) BS02 dna N/A GO:0003677 ... P04052 N/A
    1027059 9mu8:A (3.37) BS03 dna N/A GO:0003677 ... P04052 N/A
    1027060 9mu8:A (3.37) BS04 ZN N/A GO:0003677 ... P04052 N/A
    1027061 9mu8:A (3.37) BS05 ZN N/A GO:0003677 ... P04052 N/A
    1027062 9mu8:B (3.37) BS01 rna N/A GO:0003677 ... P08266 N/A
    1027063 9mu8:B (3.37) BS02 dna N/A GO:0003677 ... P08266 N/A
    1027064 9mu8:B (3.37) BS03 ZN N/A GO:0003677 ... P08266 N/A
    1027065 9mu8:C (3.37) BS01 ZN N/A GO:0003677 ... O97183 N/A
    1027066 9mu8:E (3.37) BS01 dna N/A GO:0003677 ... Q7JZF5 N/A
    1027067 9mu8:I (3.37) BS01 ZN N/A GO:0000278 ... P36958 N/A
    1027068 9mu8:I (3.37) BS02 ZN N/A GO:0000278 ... P36958 N/A
    1027069 9mu8:J (3.37) BS01 ZN N/A GO:0003677 ... Q9VC49 N/A
    1027070 9mu8:L (3.37) BS01 ZN N/A GO:0003677 ... Q6IGE3 N/A
    1027071 9mu9:A (7.8) BS01 rna N/A GO:0003677 ... P04052 N/A
    1027072 9mu9:A (7.8) BS02 dna N/A GO:0003677 ... P04052 N/A
    1027073 9mu9:A (7.8) BS03 dna N/A GO:0003677 ... P04052 N/A
    1027074 9mu9:A (7.8) BS04 ZN N/A GO:0003677 ... P04052 N/A
    1027075 9mu9:A (7.8) BS05 ZN N/A GO:0003677 ... P04052 N/A
    1027076 9mu9:B (7.8) BS01 rna N/A GO:0003677 ... P08266 N/A
    1027077 9mu9:B (7.8) BS02 dna N/A GO:0003677 ... P08266 N/A
    1027078 9mu9:B (7.8) BS03 ZN N/A GO:0003677 ... P08266 N/A
    1027079 9mu9:C (7.8) BS01 ZN N/A GO:0003677 ... O97183 N/A
    1027080 9mu9:E (7.8) BS01 dna N/A GO:0003677 ... Q7JZF5 N/A
    1027081 9mu9:I (7.8) BS01 ZN N/A GO:0000278 ... P36958 N/A
    1027082 9mu9:I (7.8) BS02 ZN N/A GO:0000278 ... P36958 N/A
    1027083 9mu9:J (7.8) BS01 ZN N/A GO:0003677 ... Q9VC49 N/A
    1027084 9mu9:L (7.8) BS01 ZN N/A GO:0003677 ... Q6IGE3 N/A
    1027085 9mu9:a (7.8) BS01 dna N/A GO:0000786 ... P02299 N/A
    1027086 9mu9:a (7.8) BS02 dna N/A GO:0000786 ... P02299 N/A
    1027087 9mu9:b (7.8) BS01 dna N/A GO:0003677 ... P84040 N/A
    1027088 9mu9:b (7.8) BS02 dna N/A GO:0003677 ... P84040 N/A
    1027089 9mu9:c (7.8) BS01 dna N/A GO:0000786 ... P84051 N/A
    1027090 9mu9:c (7.8) BS02 dna N/A GO:0000786 ... P84051 N/A
    1027091 9mu9:d (7.8) BS01 dna N/A GO:0000786 ... P02283 N/A
    1027092 9mu9:d (7.8) BS02 dna N/A GO:0000786 ... P02283 N/A
    1027093 9mu9:e (7.8) BS01 dna N/A GO:0000786 ... P02299 N/A
    1027094 9mu9:e (7.8) BS02 dna N/A GO:0000786 ... P02299 N/A
    1027095 9mu9:f (7.8) BS01 dna N/A GO:0003677 ... P84040 N/A
    1027096 9mu9:f (7.8) BS02 dna N/A GO:0003677 ... P84040 N/A
    1027097 9mu9:g (7.8) BS01 dna N/A GO:0000786 ... P84051 N/A
    1027098 9mu9:g (7.8) BS02 dna N/A GO:0000786 ... P84051 N/A
    1027099 9mu9:h (7.8) BS01 dna N/A GO:0000786 ... P02283 N/A
    1027100 9mu9:h (7.8) BS02 dna N/A GO:0000786 ... P02283 N/A
    1027101 9mub:A (2.5) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027102 9mub:A (2.5) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027103 9mub:B (2.5) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027104 9mub:B (2.5) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027105 9mub:C (2.5) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027106 9mub:C (2.5) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027107 9mub:D (2.5) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027108 9mub:D (2.5) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027109 9muc:A (2.1) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027110 9muc:A (2.1) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027111 9muc:A (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027112 9muc:B (2.1) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027113 9muc:B (2.1) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027114 9muc:B (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027115 9muc:C (2.1) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027116 9muc:C (2.1) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027117 9muc:C (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027118 9muc:D (2.1) BS01 NAD N/A GO:0000166 ... P12268 N/A
    1027119 9muc:D (2.1) BS02 IMP N/A GO:0000166 ... P12268 N/A
    1027120 9muc:D (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027121 9muc:E (2.1) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027122 9muc:E (2.1) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027123 9muc:E (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027124 9muc:F (2.1) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027125 9muc:F (2.1) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027126 9muc:F (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027127 9muc:G (2.1) BS01 IMP N/A GO:0000166 ... P12268 N/A
    1027128 9muc:G (2.1) BS02 NAD N/A GO:0000166 ... P12268 N/A
    1027129 9muc:G (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027130 9muc:H (2.1) BS01 NAD N/A GO:0000166 ... P12268 N/A
    1027131 9muc:H (2.1) BS02 IMP N/A GO:0000166 ... P12268 N/A
    1027132 9muc:H (2.1) BS03 NAD N/A GO:0000166 ... P12268 N/A
    1027133 9mud:A (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027134 9mud:B (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027135 9mud:B (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027136 9mud:C (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027137 9mud:C (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027138 9mud:D (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027139 9mud:D (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027140 9mud:E (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027141 9mud:E (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027142 9mud:F (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027143 9mud:F (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027144 9mud:G (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027145 9mud:G (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027146 9mud:H (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027147 9mud:H (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027148 9mud:I (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027149 9mud:I (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027150 9mud:J (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027151 9mud:J (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027152 9mud:K (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027153 9mud:K (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027154 9mud:L (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027155 9mud:L (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027156 9mud:M (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027157 9mud:M (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027158 9mud:N (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027159 9mud:N (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027160 9mud:O (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027161 9mud:P (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027162 9mud:Q (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027163 9mud:R (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027164 9mud:S (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027165 9mud:T (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027166 9mud:U (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027167 9mud:V (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027168 9mud:W (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027169 9mud:X (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027170 9mud:Y (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027171 9mud:Y (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027172 9mud:Z (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027173 9mud:Z (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027174 9mud:p (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027175 9mud:p (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027176 9mud:q (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027177 9mud:q (3.4) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027178 9mud:r (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027179 9mud:s (3.4) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027180 9mue:A (4.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027181 9mue:A (4.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027182 9mue:B (4.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027183 9mue:B (4.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027184 9mue:B (4.0) BS03 AR6 N/A GO:0007165 ... N/A 40208959
    1027185 9mue:C (4.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027186 9mue:D (4.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027187 9mue:D (4.0) BS02 AR6 N/A GO:0007165 ... N/A 40208959
    1027188 9mue:D (4.0) BS03 AR6 N/A GO:0007165 ... N/A 40208959
    1027189 9mug:A (1.45) BS01 ZN N/A N/A A0A3Q0KSN1 40829932
    1027190 9mug:A (1.45) BS02 ZN N/A N/A A0A3Q0KSN1 40829932
    1027191 9muh:A (3.1) BS01 Y01 N/A N/A O35111 N/A
    1027192 9muh:A (3.1) BS02 Y01 N/A N/A O35111 N/A
    1027193 9muh:B (3.1) BS01 Y01 N/A N/A O35111 N/A
    1027194 9muh:B (3.1) BS02 Y01 N/A N/A O35111 N/A
    1027195 9mui:A (2.29) BS01 CA N/A N/A A8DS70 40490540
    1027196 9mui:B (2.29) BS01 CA N/A N/A A8DS70 40490540
    1027197 9mui:C (2.29) BS01 CA N/A N/A A8DS70 40490540
    1027198 9mui:D (2.29) BS01 CA N/A N/A A8DS70 40490540
    1027199 9muj:A (2.006) BS01 rna N/A GO:0003723 ... Q72GY4 40444636
    1027200 9muj:A (2.006) BS02 SAH N/A GO:0003723 ... Q72GY4 40444636

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).