SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1027201 9muj:B (2.006) BS01 rna N/A GO:0003723 ... Q72GY4 40444636
    1027202 9muj:B (2.006) BS02 SAM N/A GO:0003723 ... Q72GY4 40444636
    1027203 9mul:A (2.4) BS01 GLY N/A GO:0015276 ... Q05586 39960408
    1027204 9mul:A (2.4) BS02 A1BRA N/A GO:0015276 ... Q05586 39960408
    1027205 9mul:B (2.4) BS01 GLU N/A GO:0015276 ... Q12879 39960408
    1027206 9mul:B (2.4) BS02 A1BRA N/A GO:0015276 ... Q12879 39960408
    1027207 9mum:A (1.97) BS01 GLY N/A GO:0015276 ... Q05586 39960408
    1027208 9mum:A (1.97) BS02 A1BRB N/A GO:0015276 ... Q05586 39960408
    1027209 9mum:B (1.97) BS01 GLU N/A GO:0015276 ... Q12879 39960408
    1027210 9mum:B (1.97) BS02 A1BRB N/A GO:0015276 ... Q12879 39960408
    1027211 9mun:A (3.26) BS01 GDS N/A N/A O00400 N/A
    1027212 9muo:A (3.3) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027213 9muo:A (3.3) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027214 9muo:B (3.3) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027215 9muo:B (3.3) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027216 9muo:B (3.3) BS03 DQV N/A GO:0007165 ... N/A 40208959
    1027217 9muo:C (3.3) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027218 9muo:D (3.3) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027219 9muw:A (2.99) BS01 peptide N/A GO:0003968 ... Q997F0 40683863
    1027220 9muw:B (2.99) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    1027221 9muw:D (2.99) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    1027222 9muw:E (2.99) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    1027223 9mux:A (1.29) BS01 peptide N/A GO:0008270 ... Q8IWV7 40880185
    1027224 9mux:A (1.29) BS02 ZN N/A GO:0008270 ... Q8IWV7 40880185
    1027225 9mux:A (1.29) BS03 ZN N/A GO:0008270 ... Q8IWV7 40880185
    1027226 9mux:A (1.29) BS04 ZN N/A GO:0008270 ... Q8IWV7 40880185
    1027227 9mva:A (1.8) BS01 SOP N/A N/A N/A N/A
    1027228 9mva:B (1.8) BS01 SOP N/A N/A N/A N/A
    1027229 9mva:C (1.8) BS01 SOP N/A N/A N/A N/A
    1027230 9mva:D (1.8) BS01 SOP N/A N/A N/A N/A
    1027231 9mva:E (1.8) BS01 SOP N/A N/A N/A N/A
    1027232 9mva:F (1.8) BS01 SOP N/A N/A N/A N/A
    1027233 9mva:F (1.8) BS02 SOP N/A N/A N/A N/A
    1027234 9mvk:A (1.97) BS01 4WI N/A N/A D3KDL2 41305527
    1027235 9mvk:B (1.97) BS01 4WI N/A N/A D3KDL2 41305527
    1027236 9mvk:C (1.97) BS01 4WI N/A N/A D3KDL2 41305527
    1027237 9mvk:D (1.97) BS01 4WI N/A N/A D3KDL2 41305527
    1027238 9mvl:A (1.5) BS01 B1S N/A N/A D3KDL2 41305527
    1027239 9mvm:A (1.96) BS01 A1BTM N/A GO:0008233 ... P0DTD1 40267184
    1027240 9mvo:A (1.84) BS01 A1BVT N/A GO:0008233 ... P0DTD1 40267184
    1027241 9mvo:A (1.84) BS02 A1BTO N/A GO:0008233 ... P0DTD1 40267184
    1027242 9mvp:A (2.35) BS01 A1BTP N/A GO:0008233 ... P0DTD1 40267184
    1027243 9mvq:A (1.57) BS01 A1BTN N/A GO:0008233 ... P0DTD1 40267184
    1027244 9mvq:B (1.57) BS01 A1BTN N/A GO:0008233 ... P0DTD1 40267184
    1027245 9mvs:A (3.43) BS01 rna N/A N/A C7NBY4 N/A
    1027246 9mvs:A (3.43) BS02 rna N/A N/A C7NBY4 N/A
    1027247 9mvw:A (1.58) BS01 peptide N/A GO:0000922 ... P0DP23 N/A
    1027248 9mvw:A (1.58) BS02 CA N/A GO:0000922 ... P0DP23 N/A
    1027249 9mvw:A (1.58) BS03 CA N/A GO:0000922 ... P0DP23 N/A
    1027250 9mvw:A (1.58) BS04 CA N/A GO:0000922 ... P0DP23 N/A
    1027251 9mvw:A (1.58) BS05 CA N/A GO:0000922 ... P0DP23 N/A
    1027252 9mvx:A (1.84) BS01 BMA N/A N/A P01857 41057658
    1027253 9mvx:B (1.84) BS01 BMA N/A N/A P01857 41057658
    1027254 9mvy:A (2.71) BS01 dna N/A GO:0003682 ... Q9AXT8 40335018
    1027255 9mvy:A (2.71) BS02 dna N/A GO:0003682 ... Q9AXT8 40335018
    1027256 9mvy:A (2.71) BS03 peptide N/A GO:0003682 ... Q9AXT8 40335018
    1027257 9mvy:A (2.71) BS04 peptide N/A GO:0003682 ... Q9AXT8 40335018
    1027258 9mvy:A (2.71) BS05 SAH N/A GO:0003682 ... Q9AXT8 40335018
    1027259 9mvy:D (2.71) BS01 dna N/A GO:0003682 ... Q9AXT8 40335018
    1027260 9mvy:D (2.71) BS02 dna N/A GO:0003682 ... Q9AXT8 40335018
    1027261 9mvy:D (2.71) BS03 peptide N/A GO:0003682 ... Q9AXT8 40335018
    1027262 9mvy:D (2.71) BS04 peptide N/A GO:0003682 ... Q9AXT8 40335018
    1027263 9mvy:D (2.71) BS05 SAH N/A GO:0003682 ... Q9AXT8 40335018
    1027264 9mw1:A (2.1) BS01 A1BTS N/A N/A Q6SZW1 N/A
    1027265 9mw1:B (2.1) BS01 A1BTS N/A N/A Q6SZW1 N/A
    1027266 9mw2:A (1.75) BS01 A1BU7 N/A N/A Q6SZW1 N/A
    1027267 9mw2:B (1.75) BS01 A1BU7 N/A N/A Q6SZW1 N/A
    1027268 9mw3:A (1.93) BS01 A1BTR N/A N/A Q6SZW1 N/A
    1027269 9mw3:B (1.93) BS01 A1BTR N/A N/A Q6SZW1 N/A
    1027270 9mw4:A (1.5) BS01 V2M N/A N/A D3KDL2 41305527
    1027271 9mw6:A (3.4) BS01 rna N/A GO:0003676 ... N/A 40434637
    1027272 9mw6:A (3.4) BS02 rna N/A GO:0003676 ... N/A 40434637
    1027273 9mw7:A (3.4) BS01 rna N/A GO:0003676 ... N/A 40434637
    1027274 9mw7:A (3.4) BS02 rna N/A GO:0003676 ... N/A 40434637
    1027275 9mw7:A (3.4) BS03 AF3 N/A GO:0003676 ... N/A 40434637
    1027276 9mw7:A (3.4) BS04 ADP N/A GO:0003676 ... N/A 40434637
    1027277 9mw8:A (3.3) BS01 rna N/A GO:0003676 ... N/A 40434637
    1027278 9mw8:A (3.3) BS02 rna N/A GO:0003676 ... N/A 40434637
    1027279 9mw8:A (3.3) BS03 ADP N/A GO:0003676 ... N/A 40434637
    1027280 9mw9:A (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027281 9mw9:A (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027282 9mw9:B (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027283 9mw9:B (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027284 9mw9:C (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027285 9mw9:D (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027286 9mw9:E (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027287 9mw9:E (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027288 9mw9:F (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027289 9mw9:F (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027290 9mw9:G (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027291 9mw9:G (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027292 9mw9:H (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027293 9mw9:H (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027294 9mw9:I (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027295 9mw9:I (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027296 9mw9:J (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027297 9mw9:J (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027298 9mw9:K (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027299 9mw9:L (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027300 9mw9:M (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027301 9mw9:M (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027302 9mw9:N (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027303 9mw9:N (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027304 9mw9:O (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027305 9mw9:O (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027306 9mw9:P (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027307 9mw9:P (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027308 9mw9:Q (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027309 9mw9:Q (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027310 9mw9:R (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027311 9mw9:R (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027312 9mw9:S (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027313 9mw9:T (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027314 9mw9:U (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027315 9mw9:U (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027316 9mw9:V (3.0) BS01 rna N/A GO:0007165 ... N/A 40208959
    1027317 9mw9:V (3.0) BS02 rna N/A GO:0007165 ... N/A 40208959
    1027318 9mwa:A (2.0) BS01 HEM N/A N/A P29475 N/A
    1027319 9mwa:A (2.0) BS02 H4B N/A N/A P29475 N/A
    1027320 9mwa:A (2.0) BS03 H44 N/A N/A P29475 N/A
    1027321 9mwa:A (2.0) BS04 ZN N/A N/A P29475 N/A
    1027322 9mwa:A (2.0) BS05 H4B N/A N/A P29475 N/A
    1027323 9mwa:B (2.0) BS01 H4B N/A N/A P29475 N/A
    1027324 9mwa:B (2.0) BS02 ZN N/A N/A P29475 N/A
    1027325 9mwa:B (2.0) BS03 HEM N/A N/A P29475 N/A
    1027326 9mwa:B (2.0) BS04 H4B N/A N/A P29475 N/A
    1027327 9mwa:B (2.0) BS05 H44 N/A N/A P29475 N/A
    1027328 9mwa:C (2.0) BS01 HEM N/A N/A P29475 N/A
    1027329 9mwa:C (2.0) BS02 H4B N/A N/A P29475 N/A
    1027330 9mwa:C (2.0) BS03 H44 N/A N/A P29475 N/A
    1027331 9mwa:C (2.0) BS04 ZN N/A N/A P29475 N/A
    1027332 9mwa:C (2.0) BS05 H4B N/A N/A P29475 N/A
    1027333 9mwa:D (2.0) BS01 H4B N/A N/A P29475 N/A
    1027334 9mwa:D (2.0) BS02 ZN N/A N/A P29475 N/A
    1027335 9mwa:D (2.0) BS03 HEM N/A N/A P29475 N/A
    1027336 9mwa:D (2.0) BS04 H4B N/A N/A P29475 N/A
    1027337 9mwa:D (2.0) BS05 H44 N/A N/A P29475 N/A
    1027338 9mwb:A (1.993) BS01 HEM N/A N/A P29475 N/A
    1027339 9mwb:A (1.993) BS02 H4B N/A N/A P29475 N/A
    1027340 9mwb:A (1.993) BS03 A1BTY N/A N/A P29475 N/A
    1027341 9mwb:A (1.993) BS04 ZN N/A N/A P29475 N/A
    1027342 9mwb:A (1.993) BS05 H4B N/A N/A P29475 N/A
    1027343 9mwb:A (1.993) BS06 A1BTY N/A N/A P29475 N/A
    1027344 9mwb:B (1.993) BS01 H4B N/A N/A P29475 N/A
    1027345 9mwb:B (1.993) BS02 ZN N/A N/A P29475 N/A
    1027346 9mwb:B (1.993) BS03 HEM N/A N/A P29475 N/A
    1027347 9mwb:B (1.993) BS04 H4B N/A N/A P29475 N/A
    1027348 9mwb:B (1.993) BS05 A1BTY N/A N/A P29475 N/A
    1027349 9mwb:C (1.993) BS01 HEM N/A N/A P29475 N/A
    1027350 9mwb:C (1.993) BS02 H4B N/A N/A P29475 N/A
    1027351 9mwb:C (1.993) BS03 A1BTY N/A N/A P29475 N/A
    1027352 9mwb:C (1.993) BS04 ZN N/A N/A P29475 N/A
    1027353 9mwb:C (1.993) BS05 H4B N/A N/A P29475 N/A
    1027354 9mwb:D (1.993) BS01 H4B N/A N/A P29475 N/A
    1027355 9mwb:D (1.993) BS02 A1BTY N/A N/A P29475 N/A
    1027356 9mwb:D (1.993) BS03 ZN N/A N/A P29475 N/A
    1027357 9mwb:D (1.993) BS04 HEM N/A N/A P29475 N/A
    1027358 9mwb:D (1.993) BS05 H4B N/A N/A P29475 N/A
    1027359 9mwb:D (1.993) BS06 A1BTY N/A N/A P29475 N/A
    1027360 9mwc:A (2.5) BS01 HEM N/A N/A P29475 N/A
    1027361 9mwc:A (2.5) BS02 H4B N/A N/A P29475 N/A
    1027362 9mwc:A (2.5) BS03 A1BT2 N/A N/A P29475 N/A
    1027363 9mwc:A (2.5) BS04 ZN N/A N/A P29475 N/A
    1027364 9mwc:A (2.5) BS05 H4B N/A N/A P29475 N/A
    1027365 9mwc:B (2.5) BS01 H4B N/A N/A P29475 N/A
    1027366 9mwc:B (2.5) BS02 ZN N/A N/A P29475 N/A
    1027367 9mwc:B (2.5) BS03 HEM N/A N/A P29475 N/A
    1027368 9mwc:B (2.5) BS04 H4B N/A N/A P29475 N/A
    1027369 9mwc:B (2.5) BS05 A1BT2 N/A N/A P29475 N/A
    1027370 9mwc:C (2.5) BS01 HEM N/A N/A P29475 N/A
    1027371 9mwc:C (2.5) BS02 H4B N/A N/A P29475 N/A
    1027372 9mwc:C (2.5) BS03 A1BT2 N/A N/A P29475 N/A
    1027373 9mwc:C (2.5) BS04 ZN N/A N/A P29475 N/A
    1027374 9mwc:C (2.5) BS05 H4B N/A N/A P29475 N/A
    1027375 9mwc:D (2.5) BS01 H4B N/A N/A P29475 N/A
    1027376 9mwc:D (2.5) BS02 H4B N/A N/A P29475 N/A
    1027377 9mwc:D (2.5) BS03 HEM N/A N/A P29475 N/A
    1027378 9mwc:D (2.5) BS04 A1BT2 N/A N/A P29475 N/A
    1027379 9mwd:A (1.94) BS01 HEM N/A N/A P29476 N/A
    1027380 9mwd:A (1.94) BS02 H4B N/A N/A P29476 N/A
    1027381 9mwd:A (1.94) BS03 A1BTY N/A N/A P29476 N/A
    1027382 9mwd:A (1.94) BS04 ZN N/A N/A P29476 N/A
    1027383 9mwe:A (2.04) BS01 HEM N/A N/A P29476 N/A
    1027384 9mwe:A (2.04) BS02 H4B N/A N/A P29476 N/A
    1027385 9mwe:A (2.04) BS03 A1BT3 N/A N/A P29476 N/A
    1027386 9mwe:A (2.04) BS04 ZN N/A N/A P29476 N/A
    1027387 9mwe:A (2.04) BS05 XYL N/A N/A P29476 N/A
    1027388 9mwf:A (2.07) BS01 HEM N/A N/A P29476 N/A
    1027389 9mwf:A (2.07) BS02 H4B N/A N/A P29476 N/A
    1027390 9mwf:A (2.07) BS03 A1BT0 N/A N/A P29476 N/A
    1027391 9mwf:A (2.07) BS04 ZN N/A N/A P29476 N/A
    1027392 9mwf:A (2.07) BS05 XYL N/A N/A P29476 N/A
    1027393 9mwg:A (1.89) BS01 HEM N/A N/A P29476 N/A
    1027394 9mwg:A (1.89) BS02 H4B N/A N/A P29476 N/A
    1027395 9mwg:A (1.89) BS03 A1BTV N/A N/A P29476 N/A
    1027396 9mwg:A (1.89) BS04 ZN N/A N/A P29476 N/A
    1027397 9mwh:A (1.958) BS01 HEM N/A N/A P29476 N/A
    1027398 9mwh:A (1.958) BS02 H4B N/A N/A P29476 N/A
    1027399 9mwh:A (1.958) BS03 ZN N/A N/A P29476 N/A
    1027400 9mwh:A (1.958) BS04 A1BT5 N/A N/A P29476 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).