SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1028401 9n2c:SR (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 40045785
    1028402 9n2c:SS (2.4) BS01 rna N/A GO:0002181 ... P0A7U3 40045785
    1028403 9n2c:ST (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 40045785
    1028404 9n2c:SU (2.4) BS01 rna N/A GO:0000028 ... P68679 40045785
    1028405 9n2c:SU (2.4) BS02 rna N/A GO:0000028 ... P68679 40045785
    1028406 9n2d:A (2.7) BS01 JSG N/A GO:0019867 ... A5FJ90 41266322
    1028407 9n2d:B (2.7) BS01 GAL N/A N/A A5FK27 41266322
    1028408 9n2d:B (2.7) BS02 GCU N/A N/A A5FK27 41266322
    1028409 9n2d:B (2.7) BS03 MAN N/A N/A A5FK27 41266322
    1028410 9n2d:B (2.7) BS04 JSG N/A N/A A5FK27 41266322
    1028411 9n2d:C (2.7) BS01 GAL N/A N/A A5FLQ8 41266322
    1028412 9n2d:C (2.7) BS02 GCU N/A N/A A5FLQ8 41266322
    1028413 9n2d:D (2.7) BS01 CA N/A GO:0003755 ... A5FNX9 41266322
    1028414 9n2d:D (2.7) BS02 CA N/A GO:0003755 ... A5FNX9 41266322
    1028415 9n2d:D (2.7) BS03 CA N/A GO:0003755 ... A5FNX9 41266322
    1028416 9n2d:D (2.7) BS04 CA N/A GO:0003755 ... A5FNX9 41266322
    1028417 9n2d:D (2.7) BS05 CA N/A GO:0003755 ... A5FNX9 41266322
    1028418 9n2d:D (2.7) BS06 CA N/A GO:0003755 ... A5FNX9 41266322
    1028419 9n2d:D (2.7) BS07 CA N/A GO:0003755 ... A5FNX9 41266322
    1028420 9n2j:A (2.9) BS01 EST N/A N/A D6N7U3 N/A
    1028421 9n2k:A (1.36) BS01 ADP N/A N/A P49850 41478286
    1028422 9n2k:B (1.36) BS01 ADP N/A N/A P49850 41478286
    1028423 9n2m:A (1.35) BS01 A1BVM N/A GO:0004672 ... P53355 N/A
    1028424 9n2n:U (3.87) BS01 dna N/A N/A P96276 N/A
    1028425 9n2o:A (1.49) BS01 A1BVL N/A GO:0004672 ... P53355 N/A
    1028426 9n2q:A (2.51) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028427 9n2q:B (2.51) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028428 9n2q:B (2.51) BS02 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028429 9n2q:C (2.51) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028430 9n2q:C (2.51) BS02 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028431 9n2q:D (2.51) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028432 9n2q:E (2.51) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028433 9n2q:F (2.51) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028434 9n2r:A (2.75) BS01 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028435 9n2r:A (2.75) BS02 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028436 9n2r:B (2.75) BS01 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028437 9n2r:B (2.75) BS02 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028438 9n2r:C (2.75) BS01 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028439 9n2r:C (2.75) BS02 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028440 9n2r:C (2.75) BS03 MG N/A GO:0000045 ... Q3UED7 41387427
    1028441 9n2r:D (2.75) BS01 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028442 9n2r:D (2.75) BS02 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028443 9n2r:D (2.75) BS03 MG N/A GO:0000045 ... Q3UED7 41387427
    1028444 9n2r:E (2.75) BS01 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028445 9n2r:F (2.75) BS01 GSP N/A GO:0000045 ... Q3UED7 41387427
    1028446 9n2s:A (3.31) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028447 9n2s:B (3.31) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028448 9n2t:A (2.6) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028449 9n2t:B (2.6) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028450 9n2t:C (2.6) BS01 GDP N/A GO:0000045 ... Q3UED7 41387427
    1028451 9n2u:A (2.06) BS01 A1BVO N/A GO:0008198 ... B1IVJ9 N/A
    1028452 9n2u:A (2.06) BS02 FE2 N/A GO:0008198 ... B1IVJ9 N/A
    1028453 9n2u:B (2.06) BS01 A1BVO N/A GO:0008198 ... B1IVJ9 N/A
    1028454 9n2u:B (2.06) BS02 FE2 N/A GO:0008198 ... B1IVJ9 N/A
    1028455 9n33:A (2.61) BS01 A1BVO N/A GO:0008198 ... B1IVJ9 N/A
    1028456 9n33:A (2.61) BS02 FE2 N/A GO:0008198 ... B1IVJ9 N/A
    1028457 9n33:B (2.61) BS01 A1BVO N/A GO:0008198 ... B1IVJ9 N/A
    1028458 9n33:B (2.61) BS02 A1BVO N/A GO:0008198 ... B1IVJ9 N/A
    1028459 9n33:B (2.61) BS03 FE2 N/A GO:0008198 ... B1IVJ9 N/A
    1028460 9n34:A (2.86) BS01 FE2 N/A GO:0008198 ... B1IVJ9 N/A
    1028461 9n34:B (2.86) BS01 FE2 N/A GO:0008198 ... B1IVJ9 N/A
    1028462 9n36:A (2.72) BS01 A1BVR N/A GO:0000166 ... P28887 40454903
    1028463 9n37:A (2.2) BS01 MG N/A GO:0000287 ... O03042 N/A
    1028464 9n37:C (2.2) BS01 MG N/A GO:0000287 ... O03042 N/A
    1028465 9n37:D (2.2) BS01 MG N/A GO:0000287 ... O03042 N/A
    1028466 9n37:E (2.2) BS01 MG N/A GO:0000287 ... O03042 N/A
    1028467 9n37:F (2.2) BS01 MG N/A GO:0000287 ... O03042 N/A
    1028468 9n37:G (2.2) BS01 MG N/A GO:0000287 ... O03042 N/A
    1028469 9n37:H (2.2) BS01 MG N/A GO:0000287 ... O03042 N/A
    1028470 9n39:A (2.255) BS01 dna N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028471 9n39:A (2.255) BS02 dna N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028472 9n39:A (2.255) BS03 MN N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028473 9n39:A (2.255) BS04 A1BVQ N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028474 9n39:B (2.255) BS01 dna N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028475 9n39:B (2.255) BS02 dna N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028476 9n39:B (2.255) BS03 MN N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028477 9n39:B (2.255) BS04 A1BVQ N/A GO:0003677 ... P0A0K8
    P20831
    40248158
    1028478 9n3h:A (2.543) BS01 A1BVU N/A GO:0005198 ... P03147 40666476
    1028479 9n3h:B (2.543) BS01 A1BVU N/A GO:0005198 ... P03147 40666476
    1028480 9n3l:A (1.9) BS01 E0G N/A GO:0000307 ... P12004 41743503
    1028481 9n3m:A (1.9) BS01 A1BVV N/A GO:0008233 ... P0DTC1 40823489
    1028482 9n3n:A (2.75) BS01 MTA N/A GO:0000387 ... O14744 40035511
    1028483 9n3n:A (2.75) BS02 A1BV5 N/A GO:0000387 ... O14744 40035511
    1028484 9n3o:A (2.37) BS01 MTA N/A GO:0000387 ... O14744 40035511
    1028485 9n3o:A (2.37) BS02 A1BV4 N/A GO:0000387 ... O14744 40035511
    1028486 9n3p:A (2.51) BS01 MTA N/A GO:0000387 ... O14744 40035511
    1028487 9n3p:A (2.51) BS02 A1BV3 N/A GO:0000387 ... O14744 40035511
    1028488 9n3p:B (2.51) BS01 A1BV3 N/A GO:0000209 ... Q9BQA1 40035511
    1028489 9n3q:A (2.54) BS01 MTA N/A GO:0000387 ... O14744 40035511
    1028490 9n3q:A (2.54) BS02 A1BV2 N/A GO:0000387 ... O14744 40035511
    1028491 9n3q:C (2.54) BS01 MTA N/A GO:0000387 ... O14744 40035511
    1028492 9n3q:C (2.54) BS02 A1BV2 N/A GO:0000387 ... O14744 40035511
    1028493 9n3r:A (2.47) BS01 MTA N/A GO:0000387 ... O14744 40035511
    1028494 9n3r:A (2.47) BS02 A1BV0 N/A GO:0000387 ... O14744 40035511
    1028495 9n3r:C (2.47) BS01 MTA N/A GO:0000387 ... O14744 40035511
    1028496 9n3r:C (2.47) BS02 A1BV0 N/A GO:0000387 ... O14744 40035511
    1028497 9n3u:A (1.28) BS01 MAN N/A N/A A0A0E0SJJ3 N/A
    1028498 9n3u:A (1.28) BS02 MAN N/A N/A A0A0E0SJJ3 N/A
    1028499 9n3u:A (1.28) BS03 CU N/A N/A A0A0E0SJJ3 N/A
    1028500 9n3v:A (2.65) BS01 MG N/A GO:0005886 ... A0A1V0NGB6 N/A
    1028501 9n3v:A (2.65) BS02 BEF N/A GO:0005886 ... A0A1V0NGB6 N/A
    1028502 9n43:A (2.6) BS01 FE N/A GO:0005856 ... G9NNG6 39849356
    1028503 9n43:B (2.6) BS01 FE N/A GO:0005856 ... G9NNG6 39849356
    1028504 9n43:C (2.6) BS01 FE N/A GO:0005856 ... G9NNG6 39849356
    1028505 9n43:D (2.6) BS01 FE N/A GO:0005856 ... G9NNG6 39849356
    1028506 9n44:A (1.11) BS01 GDP N/A N/A P01116 N/A
    1028507 9n44:A (1.11) BS02 A1BV7 N/A N/A P01116 N/A
    1028508 9n45:B (2.15) BS01 FE N/A GO:0005856 ... G9NNG6 N/A
    1028509 9n45:B (2.15) BS02 AIB N/A GO:0005856 ... G9NNG6 N/A
    1028510 9n45:C (2.15) BS01 FE N/A GO:0005856 ... G9NNG6 N/A
    1028511 9n45:D (2.15) BS01 FE N/A GO:0005856 ... G9NNG6 N/A
    1028512 9n48:A (1.85) BS01 A1BV1 N/A GO:0004364 ... P08515
    Q13153
    40495786
    1028513 9n48:B (1.85) BS01 A1BV1 N/A GO:0004364 ... P08515
    Q13153
    40495786
    1028514 9n4a:A (1.947) BS01 MG N/A GO:0000281 ... P61586 41654137
    1028515 9n4a:A (1.947) BS02 MG N/A GO:0000281 ... P61586 41654137
    1028516 9n4a:A (1.947) BS03 GNP N/A GO:0000281 ... P61586 41654137
    1028517 9n4a:B (1.947) BS01 MG N/A GO:0000281 ... P61586 41654137
    1028518 9n4a:B (1.947) BS02 MG N/A GO:0000281 ... P61586 41654137
    1028519 9n4a:B (1.947) BS03 GNP N/A GO:0000281 ... P61586 41654137
    1028520 9n4b:A (3.0) BS01 MG N/A GO:0000281 ... P61586 41654137
    1028521 9n4b:A (3.0) BS02 GSP N/A GO:0000281 ... P61586 41654137
    1028522 9n4c:A (2.3) BS01 GSP N/A GO:0000281 ... P61586 41654137
    1028523 9n4c:A (2.3) BS02 MG N/A GO:0000281 ... P61586 41654137
    1028524 9n4c:B (2.3) BS01 GSP N/A GO:0000281 ... P61586 41654137
    1028525 9n4c:B (2.3) BS02 MG N/A GO:0000281 ... P61586 41654137
    1028526 9n4c:C (2.3) BS01 GSP N/A GO:0000281 ... P61586 41654137
    1028527 9n4c:C (2.3) BS02 MG N/A GO:0000281 ... P61586 41654137
    1028528 9n4c:D (2.3) BS01 GSP N/A GO:0000281 ... P61586 41654137
    1028529 9n4c:D (2.3) BS02 MG N/A GO:0000281 ... P61586 41654137
    1028530 9n4d:A (2.5) BS01 ZN N/A GO:0001411 ... P87020 41315346
    1028531 9n4d:B (2.5) BS01 ZN N/A GO:0001411 ... P87020 41315346
    1028532 9n4d:C (2.5) BS01 ZN N/A GO:0001411 ... P87020 41315346
    1028533 9n4d:D (2.5) BS01 ZN N/A GO:0001411 ... P87020 41315346
    1028534 9n4d:E (2.5) BS01 ZN N/A GO:0001411 ... P87020 41315346
    1028535 9n4d:F (2.5) BS01 ZN N/A GO:0001411 ... P87020 41315346
    1028536 9n4j:A (3.27) BS01 Y01 N/A N/A A0A5F9C9I2 41136608
    1028537 9n4j:A (3.27) BS02 Y01 N/A N/A A0A5F9C9I2 41136608
    1028538 9n4j:A (3.27) BS03 A1AIB N/A N/A A0A5F9C9I2 41136608
    1028539 9n4j:A (3.27) BS04 Y01 N/A N/A A0A5F9C9I2 41136608
    1028540 9n4j:A (3.27) BS05 Y01 N/A N/A A0A5F9C9I2 41136608
    1028541 9n4j:B (3.27) BS01 Y01 N/A N/A A0A5F9C9I2 41136608
    1028542 9n4j:B (3.27) BS02 Y01 N/A N/A A0A5F9C9I2 41136608
    1028543 9n4j:B (3.27) BS03 Y01 N/A N/A A0A5F9C9I2 41136608
    1028544 9n4j:B (3.27) BS04 A1AIB N/A N/A A0A5F9C9I2 41136608
    1028545 9n4j:B (3.27) BS05 Y01 N/A N/A A0A5F9C9I2 41136608
    1028546 9n4j:C (3.27) BS01 Y01 N/A N/A A0A5F9C9I2 41136608
    1028547 9n4j:C (3.27) BS02 Y01 N/A N/A A0A5F9C9I2 41136608
    1028548 9n4j:C (3.27) BS03 Y01 N/A N/A A0A5F9C9I2 41136608
    1028549 9n4j:C (3.27) BS04 A1AIB N/A N/A A0A5F9C9I2 41136608
    1028550 9n4j:C (3.27) BS05 Y01 N/A N/A A0A5F9C9I2 41136608
    1028551 9n4j:D (3.27) BS01 Y01 N/A N/A A0A5F9C9I2 41136608
    1028552 9n4j:D (3.27) BS02 Y01 N/A N/A A0A5F9C9I2 41136608
    1028553 9n4j:D (3.27) BS03 Y01 N/A N/A A0A5F9C9I2 41136608
    1028554 9n4j:D (3.27) BS04 Y01 N/A N/A A0A5F9C9I2 41136608
    1028555 9n4j:D (3.27) BS05 A1AIB N/A N/A A0A5F9C9I2 41136608
    1028556 9n4l:C (4.24) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028557 9n4m:B (3.77) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028558 9n4m:D (3.77) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028559 9n4n:A (3.32) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028560 9n4n:A (3.32) BS02 KAI N/A GO:0005216 ... P42260 40846810
    1028561 9n4n:A (3.32) BS03 2J9 N/A GO:0005216 ... P42260 40846810
    1028562 9n4n:B (3.32) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028563 9n4n:B (3.32) BS02 KAI N/A GO:0005216 ... P42260 40846810
    1028564 9n4n:B (3.32) BS03 2J9 N/A GO:0005216 ... P42260 40846810
    1028565 9n4n:B (3.32) BS04 2J9 N/A GO:0005216 ... P42260 40846810
    1028566 9n4n:C (3.32) BS01 2J9 N/A GO:0005216 ... P42260 40846810
    1028567 9n4n:C (3.32) BS02 2J9 N/A GO:0005216 ... P42260 40846810
    1028568 9n4n:C (3.32) BS03 KAI N/A GO:0005216 ... P42260 40846810
    1028569 9n4n:D (3.32) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028570 9n4n:D (3.32) BS02 2J9 N/A GO:0005216 ... P42260 40846810
    1028571 9n4n:D (3.32) BS03 2J9 N/A GO:0005216 ... P42260 40846810
    1028572 9n4n:D (3.32) BS04 KAI N/A GO:0005216 ... P42260 40846810
    1028573 9n4p:A (3.58) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028574 9n4p:B (3.58) BS01 BMA N/A GO:0005216 ... P42260 40846810
    1028575 9n4p:B (3.58) BS02 MAN N/A GO:0005216 ... P42260 40846810
    1028576 9n4p:C (3.58) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028577 9n4q:D (3.48) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028578 9n4r:A (3.48) BS01 KAI N/A GO:0005216 ... P42260 40846810
    1028579 9n4r:A (3.48) BS02 2J9 N/A GO:0005216 ... P42260 40846810
    1028580 9n4r:A (3.48) BS03 2J9 N/A GO:0005216 ... P42260 40846810
    1028581 9n4r:B (3.48) BS01 2J9 N/A GO:0005216 ... P42260 40846810
    1028582 9n4r:B (3.48) BS02 KAI N/A GO:0005216 ... P42260 40846810
    1028583 9n4r:B (3.48) BS03 2J9 N/A GO:0005216 ... P42260 40846810
    1028584 9n4r:C (3.48) BS01 2J9 N/A GO:0005216 ... P42260 40846810
    1028585 9n4r:C (3.48) BS02 2J9 N/A GO:0005216 ... P42260 40846810
    1028586 9n4r:C (3.48) BS03 KAI N/A GO:0005216 ... P42260 40846810
    1028587 9n4r:D (3.48) BS01 2J9 N/A GO:0005216 ... P42260 40846810
    1028588 9n4r:D (3.48) BS02 2J9 N/A GO:0005216 ... P42260 40846810
    1028589 9n4r:D (3.48) BS03 KAI N/A GO:0005216 ... P42260 40846810
    1028590 9n4s:A (3.34) BS01 KAI N/A GO:0005216 ... P42260 40846810
    1028591 9n4s:A (3.34) BS02 2J9 N/A GO:0005216 ... P42260 40846810
    1028592 9n4s:A (3.34) BS03 2J9 N/A GO:0005216 ... P42260 40846810
    1028593 9n4s:B (3.34) BS01 2J9 N/A GO:0005216 ... P42260 40846810
    1028594 9n4s:B (3.34) BS02 KAI N/A GO:0005216 ... P42260 40846810
    1028595 9n4s:B (3.34) BS03 2J9 N/A GO:0005216 ... P42260 40846810
    1028596 9n4s:C (3.34) BS01 2J9 N/A GO:0005216 ... P42260 40846810
    1028597 9n4s:C (3.34) BS02 2J9 N/A GO:0005216 ... P42260 40846810
    1028598 9n4s:C (3.34) BS03 KAI N/A GO:0005216 ... P42260 40846810
    1028599 9n4s:D (3.34) BS01 MAN N/A GO:0005216 ... P42260 40846810
    1028600 9n4s:D (3.34) BS02 2J9 N/A GO:0005216 ... P42260 40846810

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).