SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1029001 9n5t:BD (2.01) BS01 rna N/A GO:0003735 ... A0QSL7 N/A
    1029002 9n5t:BE (2.01) BS01 rna N/A GO:0005737 ... A0QSG6 N/A
    1029003 9n5t:BF (2.01) BS01 rna N/A GO:0003735 ... A0A2U9Q0X2 N/A
    1029004 9n5t:BG (2.01) BS01 rna N/A GO:0000049 ... A0QS97 N/A
    1029005 9n5t:BG (2.01) BS02 rna N/A GO:0000049 ... A0QS97 N/A
    1029006 9n5t:BH (2.01) BS01 rna N/A GO:0005737 ... A0QSG3 N/A
    1029007 9n5t:BI (2.01) BS01 rna N/A GO:0003723 ... A0QSP9 N/A
    1029008 9n5t:BI (2.01) BS02 rna N/A GO:0003723 ... A0QSP9 N/A
    1029009 9n5t:BJ (2.01) BS01 rna N/A GO:0000049 ... A0QSD0 N/A
    1029010 9n5t:BK (2.01) BS01 rna N/A GO:0006412 ... A0QSL6 N/A
    1029011 9n5t:BL (2.01) BS01 rna N/A GO:0000049 ... A0QS96 N/A
    1029012 9n5t:BM (2.01) BS01 rna N/A GO:0000049 ... A0QSL5 N/A
    1029013 9n5t:BM (2.01) BS02 MG N/A GO:0000049 ... A0QSL5 N/A
    1029014 9n5t:BN (2.01) BS01 rna N/A GO:0003735 ... A0QSG2 N/A
    1029015 9n5t:BN (2.01) BS02 ZN N/A GO:0003735 ... A0QSG2 N/A
    1029016 9n5t:BO (2.01) BS01 rna N/A GO:0005737 ... A0QVQ3 N/A
    1029017 9n5t:BO (2.01) BS02 rna N/A GO:0005737 ... A0QVQ3 N/A
    1029018 9n5t:BP (2.01) BS01 rna N/A GO:0003735 ... A0QV37 N/A
    1029019 9n5t:BQ (2.01) BS01 rna N/A GO:0003735 ... A0QSE0 N/A
    1029020 9n5t:BR (2.01) BS01 rna N/A GO:0003735 ... A0R7F7 N/A
    1029021 9n5t:BR (2.01) BS02 ZN N/A GO:0003735 ... A0R7F7 N/A
    1029022 9n5t:BS (2.01) BS01 rna N/A GO:0000028 ... A0QSD5 N/A
    1029023 9n5t:BT (2.01) BS01 rna N/A GO:0005829 ... A0R102 N/A
    1029024 9n5t:BV (2.01) BS01 rna N/A GO:0003735 ... A0QVB8 N/A
    1029025 9n5t:C (2.01) BS01 rna N/A GO:0002181 ... A0QSD4 N/A
    1029026 9n5t:C (2.01) BS02 rna N/A GO:0002181 ... A0QSD4 N/A
    1029027 9n5t:C (2.01) BS03 MG N/A GO:0002181 ... A0QSD4 N/A
    1029028 9n5t:D (2.01) BS01 rna N/A GO:0003735 ... A0QSD1 N/A
    1029029 9n5t:E (2.01) BS01 rna N/A GO:0003735 ... A0QSD2 N/A
    1029030 9n5t:F (2.01) BS01 rna N/A GO:0000049 ... A0QSG1 N/A
    1029031 9n5t:F (2.01) BS02 rna N/A GO:0000049 ... A0QSG1 N/A
    1029032 9n5t:F (2.01) BS03 rna N/A GO:0000049 ... A0QSG1 N/A
    1029033 9n5t:G (2.01) BS01 rna N/A GO:0002181 ... A0QSG4 N/A
    1029034 9n5t:H (2.01) BS01 rna N/A GO:0006412 ... A0R7F6 N/A
    1029035 9n5t:J (2.01) BS01 rna N/A GO:0003735 ... A0QS45 N/A
    1029036 9n5t:K (2.01) BS01 rna N/A GO:0003729 ... A0QSP8 N/A
    1029037 9n5t:L (2.01) BS01 rna N/A GO:0003735 ... A0QSF9 N/A
    1029038 9n5t:L (2.01) BS02 rna N/A GO:0003735 ... A0QSF9 N/A
    1029039 9n5t:M (2.01) BS01 rna N/A GO:0003735 ... A0QSG8 N/A
    1029040 9n5t:N (2.01) BS01 rna N/A GO:0003735 ... A0QSD8 N/A
    1029041 9n5t:O (2.01) BS01 rna N/A GO:0003735 ... A0QSL9 N/A
    1029042 9n5t:P (2.01) BS01 rna N/A GO:0005737 ... A0QSG5 N/A
    1029043 9n5t:P (2.01) BS02 rna N/A GO:0005737 ... A0QSG5 N/A
    1029044 9n5t:Q (2.01) BS01 rna N/A GO:0003735 ... A0QV42 N/A
    1029045 9n5t:Q (2.01) BS02 rna N/A GO:0003735 ... A0QV42 N/A
    1029046 9n5t:R (2.01) BS01 rna N/A GO:0000027 ... A0QYU6 N/A
    1029047 9n5t:S (2.01) BS01 rna N/A GO:0003735 ... A0R151 N/A
    1029048 9n5t:T (2.01) BS01 rna N/A GO:0003735 ... A0QSD6 N/A
    1029049 9n5t:U (2.01) BS01 rna N/A GO:0006412 ... A0QSD3 N/A
    1029050 9n5t:V (2.01) BS01 rna N/A GO:0006412 ... A0QSG0 N/A
    1029051 9n5t:W (2.01) BS01 rna N/A GO:0003723 ... A0R3D2 N/A
    1029052 9n5t:W (2.01) BS02 rna N/A GO:0003723 ... A0R3D2 N/A
    1029053 9n5t:X (2.01) BS01 rna N/A GO:0003735 ... A0R150 N/A
    1029054 9n5t:X (2.01) BS02 rna N/A GO:0003735 ... A0R150 N/A
    1029055 9n5t:Y (2.01) BS01 rna N/A GO:0006412 ... A0QV03 N/A
    1029056 9n5t:Y (2.01) BS02 ZN N/A GO:0006412 ... A0QV03 N/A
    1029057 9n5t:Z (2.01) BS01 rna N/A GO:0006412 ... A0QSD9 N/A
    1029058 9n5t:a (2.01) BS01 rna N/A GO:0006412 ... A0QSG7 N/A
    1029059 9n5t:a (2.01) BS02 rna N/A GO:0006412 ... A0QSG7 N/A
    1029060 9n5t:b (2.01) BS01 rna N/A GO:0006412 ... A0R3I9 N/A
    1029061 9n5t:c (2.01) BS01 rna N/A GO:0005737 ... A0QS39 N/A
    1029062 9n5t:c (2.01) BS02 ZN N/A GO:0005737 ... A0QS39 N/A
    1029063 9n5t:d (2.01) BS01 rna N/A GO:0006412 ... A0R7K0 N/A
    1029064 9n5t:e (2.01) BS01 rna N/A GO:0003735 ... A0QYU7 N/A
    1029065 9n5t:f (2.01) BS01 rna N/A GO:0005737 ... A0QSL4 N/A
    1029066 9n5t:f (2.01) BS02 ZN N/A GO:0005737 ... A0QSL4 N/A
    1029067 9n5t:g (2.01) BS01 rna N/A GO:0006412 ... A0R215 N/A
    1029068 9n5t:g (2.01) BS02 ZN N/A GO:0006412 ... A0R215 N/A
    1029069 9n5u:A (2.85) BS01 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029070 9n5u:A (2.85) BS02 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029071 9n5u:A (2.85) BS03 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029072 9n5u:A (2.85) BS04 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029073 9n5u:A (2.85) BS05 FAD N/A GO:0008137 ... C6A4M3 40107619
    1029074 9n5u:A (2.85) BS06 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029075 9n5u:A (2.85) BS07 FES N/A GO:0008137 ... C6A4M3 40107619
    1029076 9n5u:B (2.85) BS01 SF4 N/A GO:0016491 ... A0A117L1A0 40107619
    1029077 9n5u:B (2.85) BS02 FMN N/A GO:0016491 ... A0A117L1A0 40107619
    1029078 9n5u:B (2.85) BS03 SF4 N/A GO:0016491 ... A0A117L1A0 40107619
    1029079 9n5u:B (2.85) BS04 SF4 N/A GO:0016491 ... A0A117L1A0 40107619
    1029080 9n5u:B (2.85) BS05 ZN N/A GO:0016491 ... A0A117L1A0 40107619
    1029081 9n5u:B (2.85) BS06 ZN N/A GO:0016491 ... A0A117L1A0 40107619
    1029082 9n5u:C (2.85) BS01 FES N/A GO:0016491 ... A0A117L1U2 40107619
    1029083 9n5v:A (2.76) BS01 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029084 9n5v:A (2.76) BS02 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029085 9n5v:A (2.76) BS03 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029086 9n5v:A (2.76) BS04 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029087 9n5v:A (2.76) BS05 FAD N/A GO:0008137 ... C6A4M3 40107619
    1029088 9n5v:A (2.76) BS06 SF4 N/A GO:0008137 ... C6A4M3 40107619
    1029089 9n5v:A (2.76) BS07 FES N/A GO:0008137 ... C6A4M3 40107619
    1029090 9n5v:B (2.76) BS01 SF4 N/A GO:0016491 ... A0A117L1A0 40107619
    1029091 9n5v:B (2.76) BS02 FMN N/A GO:0016491 ... A0A117L1A0 40107619
    1029092 9n5v:B (2.76) BS03 SF4 N/A GO:0016491 ... A0A117L1A0 40107619
    1029093 9n5v:B (2.76) BS04 SF4 N/A GO:0016491 ... A0A117L1A0 40107619
    1029094 9n5v:B (2.76) BS05 NAD N/A GO:0016491 ... A0A117L1A0 40107619
    1029095 9n5v:B (2.76) BS06 ZN N/A GO:0016491 ... A0A117L1A0 40107619
    1029096 9n5v:B (2.76) BS07 ZN N/A GO:0016491 ... A0A117L1A0 40107619
    1029097 9n61:A (3.6) BS01 peptide N/A GO:0002250 ... Q03518 40885191
    1029098 9n61:A (3.6) BS02 ATP N/A GO:0002250 ... Q03518 40885191
    1029099 9n61:B (3.6) BS01 peptide N/A GO:0002250 ... Q03519 40885191
    1029100 9n61:B (3.6) BS02 ATP N/A GO:0002250 ... Q03519 40885191
    1029101 9n62:A (3.4) BS01 ATP N/A GO:0002250 ... Q03518 40885191
    1029102 9n62:B (3.4) BS01 ATP N/A GO:0002250 ... Q03519 40885191
    1029103 9n63:A (3.1) BS01 ATP N/A GO:0002250 ... Q03518 40885191
    1029104 9n63:A (3.1) BS02 MG N/A GO:0002250 ... Q03518 40885191
    1029105 9n63:A (3.1) BS03 ATP N/A GO:0002250 ... Q03518 40885191
    1029106 9n63:B (3.1) BS01 ATP N/A GO:0002250 ... Q03519 40885191
    1029107 9n63:B (3.1) BS02 ATP N/A GO:0002250 ... Q03519 40885191
    1029108 9n63:B (3.1) BS03 MG N/A GO:0002250 ... Q03519 40885191
    1029109 9n64:A (3.7) BS01 ATP N/A GO:0002250 ... Q03518 40885191
    1029110 9n64:A (3.7) BS02 MG N/A GO:0002250 ... Q03518 40885191
    1029111 9n64:A (3.7) BS03 ATP N/A GO:0002250 ... Q03518 40885191
    1029112 9n64:B (3.7) BS01 ATP N/A GO:0002250 ... Q03519 40885191
    1029113 9n64:B (3.7) BS02 ATP N/A GO:0002250 ... Q03519 40885191
    1029114 9n64:B (3.7) BS03 MG N/A GO:0002250 ... Q03519 40885191
    1029115 9n65:A (3.7) BS01 ATP N/A GO:0002250 ... Q03518 40885191
    1029116 9n65:A (3.7) BS02 MG N/A GO:0002250 ... Q03518 40885191
    1029117 9n65:B (3.7) BS01 ADP N/A GO:0002250 ... Q03519 40885191
    1029118 9n66:A (3.2) BS01 ATP N/A GO:0002250 ... Q03518 40885191
    1029119 9n66:A (3.2) BS02 MG N/A GO:0002250 ... Q03518 40885191
    1029120 9n66:B (3.2) BS01 ADP N/A GO:0002250 ... Q03519 40885191
    1029121 9n66:B (3.2) BS02 MG N/A GO:0002250 ... Q03519 40885191
    1029122 9n67:A (1.8) BS01 FMN N/A GO:0004152 ... E9AI53 40658390
    1029123 9n67:B (1.8) BS01 FMN N/A GO:0004152 ... E9AI53 40658390
    1029124 9n68:A (1.45) BS01 FMN N/A GO:0004152 ... E9AI53 40658390
    1029125 9n68:A (1.45) BS02 A1BWJ N/A GO:0004152 ... E9AI53 40658390
    1029126 9n68:B (1.45) BS01 FMN N/A GO:0004152 ... E9AI53 40658390
    1029127 9n68:B (1.45) BS02 A1BWJ N/A GO:0004152 ... E9AI53 40658390
    1029128 9n69:A (3.13) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029129 9n69:B (3.13) BS01 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029130 9n69:C (3.13) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029131 9n69:C (3.13) BS02 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029132 9n69:D (3.13) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029133 9n69:D (3.13) BS02 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029134 9n69:E (3.13) BS01 dna N/A GO:0003723 ... A0AAD2V6H6 41006229
    1029135 9n69:E (3.13) BS02 rna N/A GO:0003723 ... A0AAD2V6H6 41006229
    1029136 9n69:F (3.13) BS01 ZN N/A N/A A0AAD2V7M6 41006229
    1029137 9n6b:A (3.09) BS01 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029138 9n6b:B (3.09) BS01 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029139 9n6b:C (3.09) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029140 9n6b:C (3.09) BS02 rna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029141 9n6b:C (3.09) BS03 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029142 9n6b:C (3.09) BS04 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029143 9n6b:D (3.09) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029144 9n6b:D (3.09) BS02 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029145 9n6b:D (3.09) BS03 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029146 9n6b:E (3.09) BS01 dna N/A GO:0003723 ... A0AAD2V6H6 41006229
    1029147 9n6b:E (3.09) BS02 rna N/A GO:0003723 ... A0AAD2V6H6 41006229
    1029148 9n6b:F (3.09) BS01 ZN N/A N/A A0AAD2V7M6 41006229
    1029149 9n6c:A (2.99) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029150 9n6c:A (2.99) BS02 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029151 9n6c:B (2.99) BS01 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029152 9n6c:C (2.99) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029153 9n6c:C (2.99) BS02 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029154 9n6c:D (2.99) BS01 dna N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029155 9n6c:D (2.99) BS02 ATP N/A GO:0000731 ... A0AAD2V6K7 41006229
    1029156 9n6c:E (2.99) BS01 dna N/A GO:0003723 ... A0AAD2V6H6 41006229
    1029157 9n6c:E (2.99) BS02 rna N/A GO:0003723 ... A0AAD2V6H6 41006229
    1029158 9n6f:A (1.9) BS01 A1BFE N/A N/A P0DTD1 N/A
    1029159 9n6g:A (2.59) BS01 A1BWA N/A GO:0004672 ... N/A 40665765
    1029160 9n6g:B (2.59) BS01 A1BWA N/A GO:0004672 ... N/A 40665765
    1029161 9n6g:C (2.59) BS01 A1BWA N/A GO:0004672 ... N/A 40665765
    1029162 9n6g:D (2.59) BS01 A1BWA N/A GO:0004672 ... N/A 40665765
    1029163 9n6h:A (2.54) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029164 9n6h:A (2.54) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029165 9n6h:B (2.54) BS01 dna N/A GO:0003677 ... P62799 40437259
    1029166 9n6h:B (2.54) BS02 dna N/A GO:0003677 ... P62799 40437259
    1029167 9n6h:C (2.54) BS01 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029168 9n6h:C (2.54) BS02 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029169 9n6h:D (2.54) BS01 dna N/A GO:0000786 ... P02281 40437259
    1029170 9n6h:D (2.54) BS02 dna N/A GO:0000786 ... P02281 40437259
    1029171 9n6h:E (2.54) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029172 9n6h:E (2.54) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029173 9n6h:F (2.54) BS01 dna N/A GO:0003677 ... P62799 40437259
    1029174 9n6h:F (2.54) BS02 dna N/A GO:0003677 ... P62799 40437259
    1029175 9n6h:G (2.54) BS01 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029176 9n6h:G (2.54) BS02 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029177 9n6h:H (2.54) BS01 dna N/A GO:0000786 ... P02281 40437259
    1029178 9n6h:H (2.54) BS02 dna N/A GO:0000786 ... P02281 40437259
    1029179 9n6h:K (2.54) BS01 dna N/A GO:0005524 ... P32657 40437259
    1029180 9n6h:K (2.54) BS02 dna N/A GO:0005524 ... P32657 40437259
    1029181 9n6i:A (2.61) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029182 9n6i:A (2.61) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029183 9n6i:B (2.61) BS01 dna N/A GO:0003677 ... P62799 40437259
    1029184 9n6i:B (2.61) BS02 dna N/A GO:0003677 ... P62799 40437259
    1029185 9n6i:C (2.61) BS01 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029186 9n6i:C (2.61) BS02 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029187 9n6i:D (2.61) BS01 dna N/A GO:0000786 ... P02281 40437259
    1029188 9n6i:D (2.61) BS02 dna N/A GO:0000786 ... P02281 40437259
    1029189 9n6i:E (2.61) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029190 9n6i:E (2.61) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40437259
    1029191 9n6i:F (2.61) BS01 dna N/A GO:0003677 ... P62799 40437259
    1029192 9n6i:F (2.61) BS02 dna N/A GO:0003677 ... P62799 40437259
    1029193 9n6i:G (2.61) BS01 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029194 9n6i:G (2.61) BS02 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029195 9n6i:H (2.61) BS01 dna N/A GO:0000786 ... P02281 40437259
    1029196 9n6i:H (2.61) BS02 dna N/A GO:0000786 ... P02281 40437259
    1029197 9n6i:K (2.61) BS01 dna N/A GO:0005524 ... P32657 40437259
    1029198 9n6i:K (2.61) BS02 dna N/A GO:0005524 ... P32657 40437259
    1029199 9n6i:L (2.61) BS01 dna N/A GO:0005524 ... P32657 40437259
    1029200 9n6i:L (2.61) BS02 dna N/A GO:0005524 ... P32657 40437259

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).