SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1029201 9n6k:A (2.9) BS01 dna N/A GO:0000786 ... P84233 40437259
    1029202 9n6k:A (2.9) BS02 dna N/A GO:0000786 ... P84233 40437259
    1029203 9n6k:B (2.9) BS01 dna N/A GO:0003677 ... P62799 40437259
    1029204 9n6k:B (2.9) BS02 dna N/A GO:0003677 ... P62799 40437259
    1029205 9n6k:C (2.9) BS01 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029206 9n6k:C (2.9) BS02 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029207 9n6k:D (2.9) BS01 dna N/A GO:0000786 ... P02281 40437259
    1029208 9n6k:D (2.9) BS02 dna N/A GO:0000786 ... P02281 40437259
    1029209 9n6k:E (2.9) BS01 dna N/A GO:0000786 ... P84233 40437259
    1029210 9n6k:E (2.9) BS02 dna N/A GO:0000786 ... P84233 40437259
    1029211 9n6k:F (2.9) BS01 dna N/A GO:0003677 ... P62799 40437259
    1029212 9n6k:F (2.9) BS02 dna N/A GO:0003677 ... P62799 40437259
    1029213 9n6k:G (2.9) BS01 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029214 9n6k:G (2.9) BS02 dna N/A GO:0000786 ... Q6AZJ8 40437259
    1029215 9n6k:H (2.9) BS01 dna N/A GO:0000786 ... P02281 40437259
    1029216 9n6k:H (2.9) BS02 dna N/A GO:0000786 ... P02281 40437259
    1029217 9n6k:K (2.9) BS01 dna N/A GO:0005524 ... P32657 40437259
    1029218 9n6k:K (2.9) BS02 dna N/A GO:0005524 ... P32657 40437259
    1029219 9n6k:L (2.9) BS01 dna N/A GO:0005524 ... P32657 40437259
    1029220 9n6k:L (2.9) BS02 dna N/A GO:0005524 ... P32657 40437259
    1029221 9n6l:A (2.2) BS01 K36 N/A GO:0008233 ... P0DTD1 40676153
    1029222 9n6m:A (2.0) BS01 4WI N/A GO:0008233 ... P0DTD1 40676153
    1029223 9n6n:A (1.85) BS01 ZQB N/A GO:0008233 ... P0DTD1 40676153
    1029224 9n6o:A (1.9) BS01 FMN N/A GO:0004152 ... E9AI53 40658390
    1029225 9n6o:A (1.9) BS02 A1BZM N/A GO:0004152 ... E9AI53 40658390
    1029226 9n6o:B (1.9) BS01 FMN N/A GO:0004152 ... E9AI53 40658390
    1029227 9n6o:B (1.9) BS02 A1BZM N/A GO:0004152 ... E9AI53 40658390
    1029228 9n6p:A (1.9) BS01 7YY N/A GO:0008233 ... P0DTD1 40676153
    1029229 9n6q:A (1.85) BS01 A1BWI N/A GO:0004152 ... E9AI53 40658390
    1029230 9n6q:A (1.85) BS02 FMN N/A GO:0004152 ... E9AI53 40658390
    1029231 9n6q:B (1.85) BS01 A1BWI N/A GO:0004152 ... E9AI53 40658390
    1029232 9n6q:B (1.85) BS02 FMN N/A GO:0004152 ... E9AI53 40658390
    1029233 9n6r:A (1.7) BS01 7YY N/A GO:0008233 ... P0DTD1 40676153
    1029234 9n6t:A (2.77) BS01 dna N/A N/A A0Q5Y3 40613710
    1029235 9n6t:A (2.77) BS02 dna N/A N/A A0Q5Y3 40613710
    1029236 9n6t:A (2.77) BS03 rna N/A N/A A0Q5Y3 40613710
    1029237 9n6v:L4 (3.16) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1029238 9n6v:L5 (3.16) BS01 rna N/A GO:0000054 ... P26783 41162712
    1029239 9n6v:L6 (3.16) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1029240 9n6v:L8 (3.16) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1029241 9n6v:L9 (3.16) BS01 rna N/A GO:0000462 ... O13516 41162712
    1029242 9n6v:LC (3.16) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1029243 9n6v:LC (3.16) BS02 rna N/A GO:0000462 ... P0CX51 41162712
    1029244 9n6v:LD (3.16) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1029245 9n6v:LE (3.16) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1029246 9n6v:LF (3.16) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1029247 9n6v:LG (3.16) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1029248 9n6v:LH (3.16) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1029249 9n6v:LH (3.16) BS02 rna N/A GO:0000462 ... Q02931 41162712
    1029250 9n6v:LJ (3.16) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1029251 9n6v:LJ (3.16) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1029252 9n6v:LL (3.16) BS01 rna N/A GO:0000462 ... Q04177 41162712
    1029253 9n6v:LM (3.16) BS01 rna N/A GO:0000447 ... P42945 41162712
    1029254 9n6v:LN (3.16) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1029255 9n6v:LO (3.16) BS01 rna N/A GO:0000028 ... P25635 41162712
    1029256 9n6v:LO (3.16) BS02 rna N/A GO:0000028 ... P25635 41162712
    1029257 9n6v:LO (3.16) BS03 rna N/A GO:0000028 ... P25635 41162712
    1029258 9n6v:LP (3.16) BS01 rna N/A GO:0000447 ... Q02354 41162712
    1029259 9n6v:LQ (3.16) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1029260 9n6v:LR (3.16) BS01 rna N/A GO:0000447 ... Q05946 41162712
    1029261 9n6v:LS (3.16) BS01 rna N/A GO:0000292 ... P40362 41162712
    1029262 9n6v:LS (3.16) BS02 rna N/A GO:0000292 ... P40362 41162712
    1029263 9n6v:LT (3.16) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1029264 9n6v:LT (3.16) BS02 rna N/A GO:0003674 ... Q06078 41162712
    1029265 9n6v:LU (3.16) BS01 rna N/A GO:0000462 ... P33750 41162712
    1029266 9n6v:LU (3.16) BS02 rna N/A GO:0000462 ... P33750 41162712
    1029267 9n6v:LU (3.16) BS03 rna N/A GO:0000462 ... P33750 41162712
    1029268 9n6v:LV (3.16) BS01 rna N/A GO:0000462 ... P48234 41162712
    1029269 9n6v:LW (3.16) BS01 rna N/A GO:0000447 ... P40055 41162712
    1029270 9n6v:LW (3.16) BS02 rna N/A GO:0000447 ... P40055 41162712
    1029271 9n6v:LW (3.16) BS03 rna N/A GO:0000447 ... P40055 41162712
    1029272 9n6v:LX (3.16) BS01 rna N/A GO:0000049 ... P53914 41162712
    1029273 9n6v:LZ (3.16) BS01 rna N/A GO:0003723 ... P32899 41162712
    1029274 9n6v:LZ (3.16) BS02 rna N/A GO:0003723 ... P32899 41162712
    1029275 9n6v:NA (3.16) BS01 rna N/A GO:0000447 ... P47083 41162712
    1029276 9n6v:NB (3.16) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1029277 9n6v:NC (3.16) BS01 rna N/A GO:0000447 ... P40079 41162712
    1029278 9n6v:ND (3.16) BS01 rna N/A GO:0000447 ... Q08492 41162712
    1029279 9n6v:NE (3.16) BS01 rna N/A GO:0000462 ... P40546 41162712
    1029280 9n6v:NE (3.16) BS02 rna N/A GO:0000462 ... P40546 41162712
    1029281 9n6v:NE (3.16) BS03 rna N/A GO:0000462 ... P40546 41162712
    1029282 9n6v:NF (3.16) BS01 rna N/A GO:0000462 ... P05756 41162712
    1029283 9n6v:NG (3.16) BS01 rna N/A GO:0000028 ... P06367 41162712
    1029284 9n6v:NH (3.16) BS01 rna N/A GO:0000028 ... P53254 41162712
    1029285 9n6v:NH (3.16) BS02 peptide N/A GO:0000028 ... P53254 41162712
    1029286 9n6v:NH (3.16) BS03 ATP N/A GO:0000028 ... P53254 41162712
    1029287 9n6v:NI (3.16) BS01 rna N/A GO:0000028 ... P25368 41162712
    1029288 9n6v:NK (3.16) BS01 rna N/A GO:0000447 ... P25586 41162712
    1029289 9n6v:NK (3.16) BS02 rna N/A GO:0000447 ... P25586 41162712
    1029290 9n6v:NM (3.16) BS01 rna N/A GO:0000462 ... P33442 41162712
    1029291 9n6v:NN (3.16) BS01 rna N/A GO:0000462 ... Q06631 41162712
    1029292 9n6v:NQ (3.16) BS01 rna N/A GO:0000028 ... P35997 41162712
    1029293 9n6v:NQ (3.16) BS02 ZN N/A GO:0000028 ... P35997 41162712
    1029294 9n6v:SA (3.16) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1029295 9n6v:SA (3.16) BS02 rna N/A GO:0000154 ... Q12460 41162712
    1029296 9n6v:SB (3.16) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1029297 9n6v:SB (3.16) BS02 rna N/A GO:0000447 ... Q12499 41162712
    1029298 9n6v:SD (3.16) BS01 rna N/A GO:0000451 ... P15646 41162712
    1029299 9n6v:SE (3.16) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029300 9n6v:SF (3.16) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029301 9n6v:SG (3.16) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1029302 9n6v:SH (3.16) BS01 rna N/A GO:0000447 ... Q08096 41162712
    1029303 9n6v:SI (3.16) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1029304 9n6v:SI (3.16) BS02 rna N/A GO:0000462 ... Q08965 41162712
    1029305 9n6v:SI (3.16) BS03 rna N/A GO:0000462 ... Q08965 41162712
    1029306 9n6v:SI (3.16) BS04 GTP N/A GO:0000462 ... Q08965 41162712
    1029307 9n6v:SI (3.16) BS05 MG N/A GO:0000462 ... Q08965 41162712
    1029308 9n6v:SJ (3.16) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029309 9n6v:SK (3.16) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029310 9n6v:SL (3.16) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1029311 9n6v:SL (3.16) BS02 rna N/A GO:0000447 ... Q05498 41162712
    1029312 9n6v:SL (3.16) BS03 rna N/A GO:0000447 ... Q05498 41162712
    1029313 9n6v:SL (3.16) BS04 ZN N/A GO:0000447 ... Q05498 41162712
    1029314 9n6v:SM (3.16) BS01 rna N/A GO:0005515 ... P53941 41162712
    1029315 9n6v:SM (3.16) BS02 rna N/A GO:0005515 ... P53941 41162712
    1029316 9n6v:SN (3.16) BS01 rna N/A GO:0000462 ... P36144 41162712
    1029317 9n6v:SN (3.16) BS02 rna N/A GO:0000462 ... P36144 41162712
    1029318 9n6v:SP (3.16) BS01 rna N/A GO:0000447 ... P35194 41162712
    1029319 9n6v:SP (3.16) BS02 rna N/A GO:0000447 ... P35194 41162712
    1029320 9n6v:SQ (3.16) BS01 rna N/A GO:0000447 ... Q12035 41162712
    1029321 9n6v:SQ (3.16) BS02 rna N/A GO:0000447 ... Q12035 41162712
    1029322 9n6v:SR (3.16) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1029323 9n6v:SS (3.16) BS01 rna N/A GO:0000447 ... Q04500 41162712
    1029324 9n6v:SS (3.16) BS02 rna N/A GO:0000447 ... Q04500 41162712
    1029325 9n6v:ST (3.16) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1029326 9n6v:ST (3.16) BS02 rna N/A GO:0000028 ... Q99207 41162712
    1029327 9n6v:SU (3.16) BS01 rna N/A GO:0000028 ... Q06512 41162712
    1029328 9n6v:SV (3.16) BS01 rna N/A GO:0003674 ... P40470 41162712
    1029329 9n6v:SW (3.16) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1029330 9n6v:SY (3.16) BS01 rna N/A GO:0000447 ... P34247 41162712
    1029331 9n6v:SY (3.16) BS02 rna N/A GO:0000447 ... P34247 41162712
    1029332 9n6v:SY (3.16) BS03 rna N/A GO:0000447 ... P34247 41162712
    1029333 9n6v:SZ (3.16) BS01 rna N/A GO:0000447 ... P38333 41162712
    1029334 9n6w:L3 (3.05) BS01 rna N/A GO:0000054 ... P0CX55 41162712
    1029335 9n6w:L4 (3.05) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1029336 9n6w:L5 (3.05) BS01 rna N/A GO:0000054 ... P26783 41162712
    1029337 9n6w:L6 (3.05) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1029338 9n6w:L8 (3.05) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1029339 9n6w:L9 (3.05) BS01 rna N/A GO:0000462 ... O13516 41162712
    1029340 9n6w:LC (3.05) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1029341 9n6w:LC (3.05) BS02 rna N/A GO:0000462 ... P0CX51 41162712
    1029342 9n6w:LD (3.05) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1029343 9n6w:LE (3.05) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1029344 9n6w:LF (3.05) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1029345 9n6w:LG (3.05) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1029346 9n6w:LH (3.05) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1029347 9n6w:LH (3.05) BS02 rna N/A GO:0000462 ... Q02931 41162712
    1029348 9n6w:LJ (3.05) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1029349 9n6w:LJ (3.05) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1029350 9n6w:LL (3.05) BS01 rna N/A GO:0000462 ... Q04177 41162712
    1029351 9n6w:LM (3.05) BS01 rna N/A GO:0000447 ... P42945 41162712
    1029352 9n6w:LN (3.05) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1029353 9n6w:LO (3.05) BS01 rna N/A GO:0000028 ... P25635 41162712
    1029354 9n6w:LO (3.05) BS02 rna N/A GO:0000028 ... P25635 41162712
    1029355 9n6w:LO (3.05) BS03 rna N/A GO:0000028 ... P25635 41162712
    1029356 9n6w:LP (3.05) BS01 rna N/A GO:0000447 ... Q02354 41162712
    1029357 9n6w:LQ (3.05) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1029358 9n6w:LR (3.05) BS01 rna N/A GO:0000447 ... Q05946 41162712
    1029359 9n6w:LS (3.05) BS01 rna N/A GO:0000292 ... P40362 41162712
    1029360 9n6w:LS (3.05) BS02 rna N/A GO:0000292 ... P40362 41162712
    1029361 9n6w:LT (3.05) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1029362 9n6w:LT (3.05) BS02 rna N/A GO:0003674 ... Q06078 41162712
    1029363 9n6w:LU (3.05) BS01 rna N/A GO:0000462 ... P33750 41162712
    1029364 9n6w:LU (3.05) BS02 rna N/A GO:0000462 ... P33750 41162712
    1029365 9n6w:LU (3.05) BS03 rna N/A GO:0000462 ... P33750 41162712
    1029366 9n6w:LV (3.05) BS01 rna N/A GO:0000462 ... P48234 41162712
    1029367 9n6w:LW (3.05) BS01 rna N/A GO:0000447 ... P40055 41162712
    1029368 9n6w:LW (3.05) BS02 rna N/A GO:0000447 ... P40055 41162712
    1029369 9n6w:LW (3.05) BS03 rna N/A GO:0000447 ... P40055 41162712
    1029370 9n6w:LX (3.05) BS01 rna N/A GO:0000049 ... P53914 41162712
    1029371 9n6w:LZ (3.05) BS01 rna N/A GO:0003723 ... P32899 41162712
    1029372 9n6w:LZ (3.05) BS02 rna N/A GO:0003723 ... P32899 41162712
    1029373 9n6w:NA (3.05) BS01 rna N/A GO:0000447 ... P47083 41162712
    1029374 9n6w:NB (3.05) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1029375 9n6w:NC (3.05) BS01 rna N/A GO:0000447 ... P40079 41162712
    1029376 9n6w:ND (3.05) BS01 rna N/A GO:0000447 ... Q08492 41162712
    1029377 9n6w:NE (3.05) BS01 rna N/A GO:0000462 ... P40546 41162712
    1029378 9n6w:NE (3.05) BS02 rna N/A GO:0000462 ... P40546 41162712
    1029379 9n6w:NE (3.05) BS03 rna N/A GO:0000462 ... P40546 41162712
    1029380 9n6w:NF (3.05) BS01 rna N/A GO:0000462 ... P05756 41162712
    1029381 9n6w:NG (3.05) BS01 rna N/A GO:0000028 ... P06367 41162712
    1029382 9n6w:NH (3.05) BS01 rna N/A GO:0000028 ... P53254 41162712
    1029383 9n6w:NH (3.05) BS02 peptide N/A GO:0000028 ... P53254 41162712
    1029384 9n6w:NH (3.05) BS03 ATP N/A GO:0000028 ... P53254 41162712
    1029385 9n6w:NI (3.05) BS01 rna N/A GO:0000028 ... P25368 41162712
    1029386 9n6w:NK (3.05) BS01 rna N/A GO:0000447 ... P25586 41162712
    1029387 9n6w:NK (3.05) BS02 rna N/A GO:0000447 ... P25586 41162712
    1029388 9n6w:NM (3.05) BS01 rna N/A GO:0000462 ... P33442 41162712
    1029389 9n6w:NN (3.05) BS01 rna N/A GO:0000462 ... Q06631 41162712
    1029390 9n6w:NQ (3.05) BS01 rna N/A GO:0000028 ... P35997 41162712
    1029391 9n6w:NQ (3.05) BS02 ZN N/A GO:0000028 ... P35997 41162712
    1029392 9n6w:SA (3.05) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1029393 9n6w:SA (3.05) BS02 rna N/A GO:0000154 ... Q12460 41162712
    1029394 9n6w:SB (3.05) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1029395 9n6w:SB (3.05) BS02 rna N/A GO:0000447 ... Q12499 41162712
    1029396 9n6w:SD (3.05) BS01 rna N/A GO:0000451 ... P15646 41162712
    1029397 9n6w:SE (3.05) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029398 9n6w:SF (3.05) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029399 9n6w:SG (3.05) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1029400 9n6w:SH (3.05) BS01 rna N/A GO:0000447 ... Q08096 41162712

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).