SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1029401 9n6w:SI (3.05) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1029402 9n6w:SI (3.05) BS02 rna N/A GO:0000462 ... Q08965 41162712
    1029403 9n6w:SI (3.05) BS03 rna N/A GO:0000462 ... Q08965 41162712
    1029404 9n6w:SI (3.05) BS04 GTP N/A GO:0000462 ... Q08965 41162712
    1029405 9n6w:SI (3.05) BS05 MG N/A GO:0000462 ... Q08965 41162712
    1029406 9n6w:SJ (3.05) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029407 9n6w:SK (3.05) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029408 9n6w:SL (3.05) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1029409 9n6w:SL (3.05) BS02 rna N/A GO:0000447 ... Q05498 41162712
    1029410 9n6w:SL (3.05) BS03 ZN N/A GO:0000447 ... Q05498 41162712
    1029411 9n6w:SM (3.05) BS01 rna N/A GO:0005515 ... P53941 41162712
    1029412 9n6w:SM (3.05) BS02 rna N/A GO:0005515 ... P53941 41162712
    1029413 9n6w:SN (3.05) BS01 rna N/A GO:0000462 ... P36144 41162712
    1029414 9n6w:SN (3.05) BS02 rna N/A GO:0000462 ... P36144 41162712
    1029415 9n6w:SP (3.05) BS01 rna N/A GO:0000447 ... P35194 41162712
    1029416 9n6w:SP (3.05) BS02 rna N/A GO:0000447 ... P35194 41162712
    1029417 9n6w:SQ (3.05) BS01 rna N/A GO:0000447 ... Q12035 41162712
    1029418 9n6w:SQ (3.05) BS02 rna N/A GO:0000447 ... Q12035 41162712
    1029419 9n6w:SR (3.05) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1029420 9n6w:SS (3.05) BS01 rna N/A GO:0000447 ... Q04500 41162712
    1029421 9n6w:SS (3.05) BS02 rna N/A GO:0000447 ... Q04500 41162712
    1029422 9n6w:ST (3.05) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1029423 9n6w:ST (3.05) BS02 rna N/A GO:0000028 ... Q99207 41162712
    1029424 9n6w:SU (3.05) BS01 rna N/A GO:0000028 ... Q06512 41162712
    1029425 9n6w:SV (3.05) BS01 rna N/A GO:0003674 ... P40470 41162712
    1029426 9n6w:SW (3.05) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1029427 9n6w:SY (3.05) BS01 rna N/A GO:0000447 ... P34247 41162712
    1029428 9n6w:SY (3.05) BS02 rna N/A GO:0000447 ... P34247 41162712
    1029429 9n6w:SY (3.05) BS03 rna N/A GO:0000447 ... P34247 41162712
    1029430 9n6w:SZ (3.05) BS01 rna N/A GO:0000447 ... P38333 41162712
    1029431 9n6x:L3 (3.71) BS01 rna N/A GO:0000054 ... P0CX55 41162712
    1029432 9n6x:L4 (3.71) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1029433 9n6x:L5 (3.71) BS01 rna N/A GO:0000054 ... P26783 41162712
    1029434 9n6x:L6 (3.71) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1029435 9n6x:L8 (3.71) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1029436 9n6x:L9 (3.71) BS01 rna N/A GO:0000462 ... O13516 41162712
    1029437 9n6x:LC (3.71) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1029438 9n6x:LC (3.71) BS02 rna N/A GO:0000462 ... P0CX51 41162712
    1029439 9n6x:LD (3.71) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1029440 9n6x:LE (3.71) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1029441 9n6x:LF (3.71) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1029442 9n6x:LG (3.71) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1029443 9n6x:LH (3.71) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1029444 9n6x:LH (3.71) BS02 rna N/A GO:0000462 ... Q02931 41162712
    1029445 9n6x:LJ (3.71) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1029446 9n6x:LJ (3.71) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1029447 9n6x:LL (3.71) BS01 rna N/A GO:0000462 ... Q04177 41162712
    1029448 9n6x:LM (3.71) BS01 rna N/A GO:0000447 ... P42945 41162712
    1029449 9n6x:LN (3.71) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1029450 9n6x:LO (3.71) BS01 rna N/A GO:0000028 ... P25635 41162712
    1029451 9n6x:LO (3.71) BS02 rna N/A GO:0000028 ... P25635 41162712
    1029452 9n6x:LO (3.71) BS03 rna N/A GO:0000028 ... P25635 41162712
    1029453 9n6x:LP (3.71) BS01 rna N/A GO:0000447 ... Q02354 41162712
    1029454 9n6x:LQ (3.71) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1029455 9n6x:LR (3.71) BS01 rna N/A GO:0000447 ... Q05946 41162712
    1029456 9n6x:LS (3.71) BS01 rna N/A GO:0000292 ... P40362 41162712
    1029457 9n6x:LS (3.71) BS02 rna N/A GO:0000292 ... P40362 41162712
    1029458 9n6x:LT (3.71) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1029459 9n6x:LT (3.71) BS02 rna N/A GO:0003674 ... Q06078 41162712
    1029460 9n6x:LU (3.71) BS01 rna N/A GO:0000462 ... P33750 41162712
    1029461 9n6x:LU (3.71) BS02 rna N/A GO:0000462 ... P33750 41162712
    1029462 9n6x:LU (3.71) BS03 rna N/A GO:0000462 ... P33750 41162712
    1029463 9n6x:LV (3.71) BS01 rna N/A GO:0000462 ... P48234 41162712
    1029464 9n6x:LW (3.71) BS01 rna N/A GO:0000447 ... P40055 41162712
    1029465 9n6x:LW (3.71) BS02 rna N/A GO:0000447 ... P40055 41162712
    1029466 9n6x:LW (3.71) BS03 rna N/A GO:0000447 ... P40055 41162712
    1029467 9n6x:LX (3.71) BS01 rna N/A GO:0000049 ... P53914 41162712
    1029468 9n6x:LZ (3.71) BS01 rna N/A GO:0003723 ... P32899 41162712
    1029469 9n6x:LZ (3.71) BS02 rna N/A GO:0003723 ... P32899 41162712
    1029470 9n6x:NA (3.71) BS01 rna N/A GO:0000447 ... P47083 41162712
    1029471 9n6x:NB (3.71) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1029472 9n6x:NB (3.71) BS02 rna N/A GO:0000447 ... Q12136 41162712
    1029473 9n6x:ND (3.71) BS01 rna N/A GO:0000447 ... Q08492 41162712
    1029474 9n6x:NE (3.71) BS01 rna N/A GO:0000462 ... P40546 41162712
    1029475 9n6x:NE (3.71) BS02 rna N/A GO:0000462 ... P40546 41162712
    1029476 9n6x:NE (3.71) BS03 rna N/A GO:0000462 ... P40546 41162712
    1029477 9n6x:NF (3.71) BS01 rna N/A GO:0000462 ... P05756 41162712
    1029478 9n6x:NG (3.71) BS01 rna N/A GO:0000028 ... P06367 41162712
    1029479 9n6x:NH (3.71) BS01 rna N/A GO:0000028 ... P53254 41162712
    1029480 9n6x:NH (3.71) BS02 ATP N/A GO:0000028 ... P53254 41162712
    1029481 9n6x:NI (3.71) BS01 rna N/A GO:0000028 ... P25368 41162712
    1029482 9n6x:NK (3.71) BS01 rna N/A GO:0000447 ... P25586 41162712
    1029483 9n6x:NK (3.71) BS02 rna N/A GO:0000447 ... P25586 41162712
    1029484 9n6x:NM (3.71) BS01 rna N/A GO:0000462 ... P33442 41162712
    1029485 9n6x:NN (3.71) BS01 rna N/A GO:0000462 ... Q06631 41162712
    1029486 9n6x:NQ (3.71) BS01 rna N/A GO:0000028 ... P35997 41162712
    1029487 9n6x:NQ (3.71) BS02 ZN N/A GO:0000028 ... P35997 41162712
    1029488 9n6x:SA (3.71) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1029489 9n6x:SA (3.71) BS02 rna N/A GO:0000154 ... Q12460 41162712
    1029490 9n6x:SB (3.71) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1029491 9n6x:SB (3.71) BS02 rna N/A GO:0000447 ... Q12499 41162712
    1029492 9n6x:SD (3.71) BS01 rna N/A GO:0000451 ... P15646 41162712
    1029493 9n6x:SE (3.71) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029494 9n6x:SF (3.71) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029495 9n6x:SG (3.71) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1029496 9n6x:SH (3.71) BS01 rna N/A GO:0000447 ... Q08096 41162712
    1029497 9n6x:SI (3.71) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1029498 9n6x:SI (3.71) BS02 rna N/A GO:0000462 ... Q08965 41162712
    1029499 9n6x:SI (3.71) BS03 rna N/A GO:0000462 ... Q08965 41162712
    1029500 9n6x:SI (3.71) BS04 GTP N/A GO:0000462 ... Q08965 41162712
    1029501 9n6x:SI (3.71) BS05 MG N/A GO:0000462 ... Q08965 41162712
    1029502 9n6x:SJ (3.71) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029503 9n6x:SK (3.71) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029504 9n6x:SL (3.71) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1029505 9n6x:SL (3.71) BS02 rna N/A GO:0000447 ... Q05498 41162712
    1029506 9n6x:SL (3.71) BS03 rna N/A GO:0000447 ... Q05498 41162712
    1029507 9n6x:SL (3.71) BS04 ZN N/A GO:0000447 ... Q05498 41162712
    1029508 9n6x:SM (3.71) BS01 rna N/A GO:0005515 ... P53941 41162712
    1029509 9n6x:SM (3.71) BS02 rna N/A GO:0005515 ... P53941 41162712
    1029510 9n6x:SN (3.71) BS01 rna N/A GO:0000462 ... P36144 41162712
    1029511 9n6x:SN (3.71) BS02 rna N/A GO:0000462 ... P36144 41162712
    1029512 9n6x:SP (3.71) BS01 rna N/A GO:0000447 ... P35194 41162712
    1029513 9n6x:SQ (3.71) BS01 rna N/A GO:0000447 ... Q12035 41162712
    1029514 9n6x:SQ (3.71) BS02 rna N/A GO:0000447 ... Q12035 41162712
    1029515 9n6x:SQ (3.71) BS03 rna N/A GO:0000447 ... Q12035 41162712
    1029516 9n6x:SR (3.71) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1029517 9n6x:SS (3.71) BS01 rna N/A GO:0000447 ... Q04500 41162712
    1029518 9n6x:SS (3.71) BS02 rna N/A GO:0000447 ... Q04500 41162712
    1029519 9n6x:ST (3.71) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1029520 9n6x:ST (3.71) BS02 rna N/A GO:0000028 ... Q99207 41162712
    1029521 9n6x:SU (3.71) BS01 rna N/A GO:0000028 ... Q06512 41162712
    1029522 9n6x:SV (3.71) BS01 rna N/A GO:0003674 ... P40470 41162712
    1029523 9n6x:SW (3.71) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1029524 9n6x:SY (3.71) BS01 rna N/A GO:0000447 ... P34247 41162712
    1029525 9n6x:SY (3.71) BS02 rna N/A GO:0000447 ... P34247 41162712
    1029526 9n6x:SY (3.71) BS03 rna N/A GO:0000447 ... P34247 41162712
    1029527 9n6x:SZ (3.71) BS01 rna N/A GO:0000447 ... P38333 41162712
    1029528 9n6y:L4 (3.65) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1029529 9n6y:L5 (3.65) BS01 rna N/A GO:0000054 ... P26783 41162712
    1029530 9n6y:L6 (3.65) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1029531 9n6y:L8 (3.65) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1029532 9n6y:L9 (3.65) BS01 rna N/A GO:0000462 ... O13516 41162712
    1029533 9n6y:LC (3.65) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1029534 9n6y:LD (3.65) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1029535 9n6y:LE (3.65) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1029536 9n6y:LF (3.65) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1029537 9n6y:LF (3.65) BS02 peptide N/A GO:0000462 ... P0CX31 41162712
    1029538 9n6y:LG (3.65) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1029539 9n6y:LH (3.65) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1029540 9n6y:LH (3.65) BS02 rna N/A GO:0000462 ... Q02931 41162712
    1029541 9n6y:LJ (3.65) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1029542 9n6y:LJ (3.65) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1029543 9n6y:LK (3.65) BS01 rna N/A GO:0000049 ... P38882 41162712
    1029544 9n6y:LL (3.65) BS01 rna N/A GO:0000462 ... Q04177 41162712
    1029545 9n6y:LM (3.65) BS01 rna N/A GO:0000447 ... P42945 41162712
    1029546 9n6y:LN (3.65) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1029547 9n6y:LO (3.65) BS01 rna N/A GO:0000028 ... P25635 41162712
    1029548 9n6y:LO (3.65) BS02 rna N/A GO:0000028 ... P25635 41162712
    1029549 9n6y:LO (3.65) BS03 rna N/A GO:0000028 ... P25635 41162712
    1029550 9n6y:LP (3.65) BS01 rna N/A GO:0000447 ... Q02354 41162712
    1029551 9n6y:LQ (3.65) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1029552 9n6y:LR (3.65) BS01 rna N/A GO:0000447 ... Q05946 41162712
    1029553 9n6y:LS (3.65) BS01 rna N/A GO:0000292 ... P40362 41162712
    1029554 9n6y:LS (3.65) BS02 rna N/A GO:0000292 ... P40362 41162712
    1029555 9n6y:LT (3.65) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1029556 9n6y:LT (3.65) BS02 rna N/A GO:0003674 ... Q06078 41162712
    1029557 9n6y:LU (3.65) BS01 rna N/A GO:0000462 ... P33750 41162712
    1029558 9n6y:LU (3.65) BS02 rna N/A GO:0000462 ... P33750 41162712
    1029559 9n6y:LU (3.65) BS03 rna N/A GO:0000462 ... P33750 41162712
    1029560 9n6y:LV (3.65) BS01 rna N/A GO:0000462 ... P48234 41162712
    1029561 9n6y:LW (3.65) BS01 rna N/A GO:0000447 ... P40055 41162712
    1029562 9n6y:LW (3.65) BS02 rna N/A GO:0000447 ... P40055 41162712
    1029563 9n6y:LW (3.65) BS03 rna N/A GO:0000447 ... P40055 41162712
    1029564 9n6y:LX (3.65) BS01 rna N/A GO:0000049 ... P53914 41162712
    1029565 9n6y:LZ (3.65) BS01 rna N/A GO:0003723 ... P32899 41162712
    1029566 9n6y:LZ (3.65) BS02 rna N/A GO:0003723 ... P32899 41162712
    1029567 9n6y:NA (3.65) BS01 rna N/A GO:0000447 ... P47083 41162712
    1029568 9n6y:NB (3.65) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1029569 9n6y:ND (3.65) BS01 rna N/A GO:0000447 ... Q08492 41162712
    1029570 9n6y:NE (3.65) BS01 rna N/A GO:0000462 ... P40546 41162712
    1029571 9n6y:NE (3.65) BS02 rna N/A GO:0000462 ... P40546 41162712
    1029572 9n6y:NF (3.65) BS01 rna N/A GO:0000462 ... P05756 41162712
    1029573 9n6y:NG (3.65) BS01 rna N/A GO:0000028 ... P06367 41162712
    1029574 9n6y:NH (3.65) BS01 rna N/A GO:0000028 ... P53254 41162712
    1029575 9n6y:NH (3.65) BS02 ATP N/A GO:0000028 ... P53254 41162712
    1029576 9n6y:NI (3.65) BS01 rna N/A GO:0000028 ... P25368 41162712
    1029577 9n6y:NK (3.65) BS01 rna N/A GO:0000447 ... P25586 41162712
    1029578 9n6y:NK (3.65) BS02 rna N/A GO:0000447 ... P25586 41162712
    1029579 9n6y:NM (3.65) BS01 rna N/A GO:0000462 ... P33442 41162712
    1029580 9n6y:NN (3.65) BS01 rna N/A GO:0000462 ... Q06631 41162712
    1029581 9n6y:NQ (3.65) BS01 rna N/A GO:0000028 ... P35997 41162712
    1029582 9n6y:NQ (3.65) BS02 ZN N/A GO:0000028 ... P35997 41162712
    1029583 9n6y:SA (3.65) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1029584 9n6y:SA (3.65) BS02 rna N/A GO:0000154 ... Q12460 41162712
    1029585 9n6y:SB (3.65) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1029586 9n6y:SB (3.65) BS02 rna N/A GO:0000447 ... Q12499 41162712
    1029587 9n6y:SE (3.65) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029588 9n6y:SF (3.65) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029589 9n6y:SG (3.65) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1029590 9n6y:SH (3.65) BS01 rna N/A GO:0000447 ... Q08096 41162712
    1029591 9n6y:SI (3.65) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1029592 9n6y:SI (3.65) BS02 rna N/A GO:0000462 ... Q08965 41162712
    1029593 9n6y:SI (3.65) BS03 rna N/A GO:0000462 ... Q08965 41162712
    1029594 9n6y:SI (3.65) BS04 GTP N/A GO:0000462 ... Q08965 41162712
    1029595 9n6y:SI (3.65) BS05 MG N/A GO:0000462 ... Q08965 41162712
    1029596 9n6y:SJ (3.65) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029597 9n6y:SK (3.65) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029598 9n6y:SL (3.65) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1029599 9n6y:SL (3.65) BS02 rna N/A GO:0000447 ... Q05498 41162712
    1029600 9n6y:SL (3.65) BS03 rna N/A GO:0000447 ... Q05498 41162712

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).