SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1029801 9n73:NL (5.96) BS01 rna N/A GO:0000154 ... P41819 41162712
    1029802 9n73:NM (5.96) BS01 rna N/A GO:0000462 ... P33442 41162712
    1029803 9n73:NN (5.96) BS01 rna N/A GO:0000462 ... Q06631 41162712
    1029804 9n73:NP (5.96) BS01 rna N/A GO:0000054 ... P07280 41162712
    1029805 9n73:NQ (5.96) BS01 rna N/A GO:0000028 ... P35997 41162712
    1029806 9n73:NS (5.96) BS01 rna N/A GO:0000462 ... Q04217 41162712
    1029807 9n73:OH (5.96) BS01 rna N/A GO:0000028 ... P48589 41162712
    1029808 9n73:OU (5.96) BS01 rna N/A GO:0000028 ... P05759 41162712
    1029809 9n73:SB (5.96) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1029810 9n73:SE (5.96) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029811 9n73:SF (5.96) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029812 9n73:SG (5.96) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1029813 9n73:SI (5.96) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1029814 9n73:SJ (5.96) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029815 9n73:SK (5.96) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029816 9n73:SL (5.96) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1029817 9n73:SM (5.96) BS01 rna N/A GO:0005515 ... P53941 41162712
    1029818 9n73:SP (5.96) BS01 rna N/A GO:0000447 ... P35194 41162712
    1029819 9n73:SR (5.96) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1029820 9n73:ST (5.96) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1029821 9n73:SW (5.96) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1029822 9n73:SY (5.96) BS01 rna N/A GO:0000447 ... P34247 41162712
    1029823 9n73:SZ (5.96) BS01 rna N/A GO:0000447 ... P38333 41162712
    1029824 9n74:L3 (2.65) BS01 rna N/A GO:0000054 ... P0CX55 41162712
    1029825 9n74:L4 (2.65) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1029826 9n74:L5 (2.65) BS01 rna N/A GO:0000054 ... P26783 41162712
    1029827 9n74:L6 (2.65) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1029828 9n74:L7 (2.65) BS01 rna N/A GO:0002181 ... P26786 41162712
    1029829 9n74:L8 (2.65) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1029830 9n74:L9 (2.65) BS01 rna N/A GO:0000462 ... O13516 41162712
    1029831 9n74:LC (2.65) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1029832 9n74:LD (2.65) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1029833 9n74:LE (2.65) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1029834 9n74:LF (2.65) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1029835 9n74:LG (2.65) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1029836 9n74:LH (2.65) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1029837 9n74:LH (2.65) BS02 rna N/A GO:0000462 ... Q02931 41162712
    1029838 9n74:LJ (2.65) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1029839 9n74:LJ (2.65) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1029840 9n74:LK (2.65) BS01 rna N/A GO:0000049 ... P38882 41162712
    1029841 9n74:LM (2.65) BS01 rna N/A GO:0000447 ... P42945 41162712
    1029842 9n74:LN (2.65) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1029843 9n74:LO (2.65) BS01 rna N/A GO:0000028 ... P25635 41162712
    1029844 9n74:LQ (2.65) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1029845 9n74:LR (2.65) BS01 rna N/A GO:0000447 ... Q05946 41162712
    1029846 9n74:LS (2.65) BS01 rna N/A GO:0000292 ... P40362 41162712
    1029847 9n74:LS (2.65) BS02 rna N/A GO:0000292 ... P40362 41162712
    1029848 9n74:LT (2.65) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1029849 9n74:LU (2.65) BS01 rna N/A GO:0000462 ... P33750 41162712
    1029850 9n74:LU (2.65) BS02 rna N/A GO:0000462 ... P33750 41162712
    1029851 9n74:LW (2.65) BS01 rna N/A GO:0000447 ... P40055 41162712
    1029852 9n74:LW (2.65) BS02 rna N/A GO:0000447 ... P40055 41162712
    1029853 9n74:LW (2.65) BS03 rna N/A GO:0000447 ... P40055 41162712
    1029854 9n74:LZ (2.65) BS01 rna N/A GO:0003723 ... P32899 41162712
    1029855 9n74:LZ (2.65) BS02 rna N/A GO:0003723 ... P32899 41162712
    1029856 9n74:NA (2.65) BS01 rna N/A GO:0000447 ... P47083 41162712
    1029857 9n74:NA (2.65) BS02 rna N/A GO:0000447 ... P47083 41162712
    1029858 9n74:NB (2.65) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1029859 9n74:NB (2.65) BS02 rna N/A GO:0000447 ... Q12136 41162712
    1029860 9n74:NF (2.65) BS01 rna N/A GO:0000462 ... P05756 41162712
    1029861 9n74:NG (2.65) BS01 rna N/A GO:0000028 ... P06367 41162712
    1029862 9n74:NH (2.65) BS01 rna N/A GO:0000028 ... P53254 41162712
    1029863 9n74:NH (2.65) BS02 ATP N/A GO:0000028 ... P53254 41162712
    1029864 9n74:NI (2.65) BS01 rna N/A GO:0000028 ... P25368 41162712
    1029865 9n74:NL (2.65) BS01 rna N/A GO:0000154 ... P41819 41162712
    1029866 9n74:NL (2.65) BS02 rna N/A GO:0000154 ... P41819 41162712
    1029867 9n74:NM (2.65) BS01 rna N/A GO:0000462 ... P33442 41162712
    1029868 9n74:NP (2.65) BS01 rna N/A GO:0000054 ... P07280 41162712
    1029869 9n74:NQ (2.65) BS01 rna N/A GO:0000028 ... P35997 41162712
    1029870 9n74:NS (2.65) BS01 rna N/A GO:0000462 ... Q04217 41162712
    1029871 9n74:NS (2.65) BS02 ADP N/A GO:0000462 ... Q04217 41162712
    1029872 9n74:OH (2.65) BS01 rna N/A GO:0000028 ... P48589 41162712
    1029873 9n74:OU (2.65) BS01 rna N/A GO:0000028 ... P05759 41162712
    1029874 9n74:OU (2.65) BS02 ZN N/A GO:0000028 ... P05759 41162712
    1029875 9n74:SA (2.65) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1029876 9n74:SB (2.65) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1029877 9n74:SD (2.65) BS01 rna N/A GO:0000451 ... P15646 41162712
    1029878 9n74:SE (2.65) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029879 9n74:SF (2.65) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029880 9n74:SG (2.65) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1029881 9n74:SH (2.65) BS01 rna N/A GO:0000447 ... Q08096 41162712
    1029882 9n74:SI (2.65) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1029883 9n74:SI (2.65) BS02 GTP N/A GO:0000462 ... Q08965 41162712
    1029884 9n74:SI (2.65) BS03 MG N/A GO:0000462 ... Q08965 41162712
    1029885 9n74:SJ (2.65) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029886 9n74:SK (2.65) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029887 9n74:SL (2.65) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1029888 9n74:SL (2.65) BS02 ZN N/A GO:0000447 ... Q05498 41162712
    1029889 9n74:SM (2.65) BS01 rna N/A GO:0005515 ... P53941 41162712
    1029890 9n74:SP (2.65) BS01 rna N/A GO:0000447 ... P35194 41162712
    1029891 9n74:SQ (2.65) BS01 rna N/A GO:0000447 ... Q12035 41162712
    1029892 9n74:SQ (2.65) BS02 rna N/A GO:0000447 ... Q12035 41162712
    1029893 9n74:SR (2.65) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1029894 9n74:SS (2.65) BS01 rna N/A GO:0000447 ... Q04500 41162712
    1029895 9n74:ST (2.65) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1029896 9n74:SV (2.65) BS01 rna N/A GO:0003674 ... P40470 41162712
    1029897 9n74:SW (2.65) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1029898 9n74:SY (2.65) BS01 rna N/A GO:0000447 ... P34247 41162712
    1029899 9n74:SY (2.65) BS02 rna N/A GO:0000447 ... P34247 41162712
    1029900 9n74:SZ (2.65) BS01 rna N/A GO:0000447 ... P38333 41162712
    1029901 9n75:L3 (3.01) BS01 rna N/A GO:0000054 ... P0CX55 41162712
    1029902 9n75:L4 (3.01) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1029903 9n75:L4 (3.01) BS02 peptide N/A GO:0002181 ... P0CX35 41162712
    1029904 9n75:L5 (3.01) BS01 rna N/A GO:0000054 ... P26783 41162712
    1029905 9n75:L6 (3.01) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1029906 9n75:L7 (3.01) BS01 rna N/A GO:0002181 ... P26786 41162712
    1029907 9n75:L8 (3.01) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1029908 9n75:L9 (3.01) BS01 rna N/A GO:0000462 ... O13516 41162712
    1029909 9n75:LC (3.01) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1029910 9n75:LD (3.01) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1029911 9n75:LE (3.01) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1029912 9n75:LF (3.01) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1029913 9n75:LF (3.01) BS02 peptide N/A GO:0000462 ... P0CX31 41162712
    1029914 9n75:LG (3.01) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1029915 9n75:LH (3.01) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1029916 9n75:LH (3.01) BS02 rna N/A GO:0000462 ... Q02931 41162712
    1029917 9n75:LJ (3.01) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1029918 9n75:LJ (3.01) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1029919 9n75:LM (3.01) BS01 rna N/A GO:0000447 ... P42945 41162712
    1029920 9n75:LN (3.01) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1029921 9n75:LO (3.01) BS01 rna N/A GO:0000028 ... P25635 41162712
    1029922 9n75:LO (3.01) BS02 rna N/A GO:0000028 ... P25635 41162712
    1029923 9n75:LQ (3.01) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1029924 9n75:LR (3.01) BS01 rna N/A GO:0000447 ... Q05946 41162712
    1029925 9n75:LS (3.01) BS01 rna N/A GO:0000292 ... P40362 41162712
    1029926 9n75:LS (3.01) BS02 rna N/A GO:0000292 ... P40362 41162712
    1029927 9n75:LT (3.01) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1029928 9n75:LT (3.01) BS02 rna N/A GO:0003674 ... Q06078 41162712
    1029929 9n75:LW (3.01) BS01 rna N/A GO:0000447 ... P40055 41162712
    1029930 9n75:NA (3.01) BS01 rna N/A GO:0000447 ... P47083 41162712
    1029931 9n75:NB (3.01) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1029932 9n75:NB (3.01) BS02 rna N/A GO:0000447 ... Q12136 41162712
    1029933 9n75:NF (3.01) BS01 rna N/A GO:0000462 ... P05756 41162712
    1029934 9n75:NG (3.01) BS01 rna N/A GO:0000028 ... P06367 41162712
    1029935 9n75:NH (3.01) BS01 rna N/A GO:0000028 ... P53254 41162712
    1029936 9n75:NH (3.01) BS02 ATP N/A GO:0000028 ... P53254 41162712
    1029937 9n75:NI (3.01) BS01 rna N/A GO:0000028 ... P25368 41162712
    1029938 9n75:NL (3.01) BS01 rna N/A GO:0000154 ... P41819 41162712
    1029939 9n75:NL (3.01) BS02 rna N/A GO:0000154 ... P41819 41162712
    1029940 9n75:NM (3.01) BS01 rna N/A GO:0000462 ... P33442 41162712
    1029941 9n75:NP (3.01) BS01 rna N/A GO:0000054 ... P07280 41162712
    1029942 9n75:NQ (3.01) BS01 rna N/A GO:0000028 ... P35997 41162712
    1029943 9n75:NQ (3.01) BS02 ZN N/A GO:0000028 ... P35997 41162712
    1029944 9n75:NS (3.01) BS01 rna N/A GO:0000462 ... Q04217 41162712
    1029945 9n75:NS (3.01) BS02 peptide N/A GO:0000462 ... Q04217 41162712
    1029946 9n75:NS (3.01) BS03 ADP N/A GO:0000462 ... Q04217 41162712
    1029947 9n75:OH (3.01) BS01 rna N/A GO:0000028 ... P48589 41162712
    1029948 9n75:OU (3.01) BS01 rna N/A GO:0000028 ... P05759 41162712
    1029949 9n75:OU (3.01) BS02 ZN N/A GO:0000028 ... P05759 41162712
    1029950 9n75:SA (3.01) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1029951 9n75:SB (3.01) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1029952 9n75:SB (3.01) BS02 rna N/A GO:0000447 ... Q12499 41162712
    1029953 9n75:SD (3.01) BS01 rna N/A GO:0000451 ... P15646 41162712
    1029954 9n75:SE (3.01) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029955 9n75:SF (3.01) BS01 rna N/A GO:0000245 ... P39990 41162712
    1029956 9n75:SG (3.01) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1029957 9n75:SH (3.01) BS01 rna N/A GO:0000447 ... Q08096 41162712
    1029958 9n75:SI (3.01) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1029959 9n75:SI (3.01) BS02 GTP N/A GO:0000462 ... Q08965 41162712
    1029960 9n75:SI (3.01) BS03 MG N/A GO:0000462 ... Q08965 41162712
    1029961 9n75:SJ (3.01) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029962 9n75:SK (3.01) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1029963 9n75:SL (3.01) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1029964 9n75:SL (3.01) BS02 ZN N/A GO:0000447 ... Q05498 41162712
    1029965 9n75:SM (3.01) BS01 rna N/A GO:0005515 ... P53941 41162712
    1029966 9n75:SP (3.01) BS01 rna N/A GO:0000447 ... P35194 41162712
    1029967 9n75:SP (3.01) BS02 peptide N/A GO:0000447 ... P35194 41162712
    1029968 9n75:SQ (3.01) BS01 rna N/A GO:0000447 ... Q12035 41162712
    1029969 9n75:SQ (3.01) BS02 rna N/A GO:0000447 ... Q12035 41162712
    1029970 9n75:SR (3.01) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1029971 9n75:ST (3.01) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1029972 9n75:SV (3.01) BS01 rna N/A GO:0003674 ... P40470 41162712
    1029973 9n75:SW (3.01) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1029974 9n75:SW (3.01) BS02 peptide N/A GO:0000056 ... Q99216 41162712
    1029975 9n75:SY (3.01) BS01 rna N/A GO:0000447 ... P34247 41162712
    1029976 9n75:SY (3.01) BS02 rna N/A GO:0000447 ... P34247 41162712
    1029977 9n75:SZ (3.01) BS01 rna N/A GO:0000447 ... P38333 41162712
    1029978 9n76:L3 (4.2) BS01 rna N/A GO:0000054 ... P0CX55 41162712
    1029979 9n76:L4 (4.2) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1029980 9n76:L4 (4.2) BS02 peptide N/A GO:0002181 ... P0CX35 41162712
    1029981 9n76:L5 (4.2) BS01 rna N/A GO:0000054 ... P26783 41162712
    1029982 9n76:L6 (4.2) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1029983 9n76:L7 (4.2) BS01 rna N/A GO:0002181 ... P26786 41162712
    1029984 9n76:L8 (4.2) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1029985 9n76:L9 (4.2) BS01 rna N/A GO:0000462 ... O13516 41162712
    1029986 9n76:LC (4.2) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1029987 9n76:LD (4.2) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1029988 9n76:LE (4.2) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1029989 9n76:LF (4.2) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1029990 9n76:LF (4.2) BS02 peptide N/A GO:0000462 ... P0CX31 41162712
    1029991 9n76:LG (4.2) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1029992 9n76:LH (4.2) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1029993 9n76:LJ (4.2) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1029994 9n76:LJ (4.2) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1029995 9n76:LK (4.2) BS01 rna N/A GO:0000049 ... P38882 41162712
    1029996 9n76:LM (4.2) BS01 rna N/A GO:0000447 ... P42945 41162712
    1029997 9n76:LN (4.2) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1029998 9n76:LO (4.2) BS01 rna N/A GO:0000028 ... P25635 41162712
    1029999 9n76:LQ (4.2) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1030000 9n76:LR (4.2) BS01 rna N/A GO:0000447 ... Q05946 41162712

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).