SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1030001 9n76:LS (4.2) BS01 rna N/A GO:0000292 ... P40362 41162712
    1030002 9n76:LS (4.2) BS02 rna N/A GO:0000292 ... P40362 41162712
    1030003 9n76:LT (4.2) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1030004 9n76:LT (4.2) BS02 rna N/A GO:0003674 ... Q06078 41162712
    1030005 9n76:NA (4.2) BS01 rna N/A GO:0000447 ... P47083 41162712
    1030006 9n76:NB (4.2) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1030007 9n76:NB (4.2) BS02 rna N/A GO:0000447 ... Q12136 41162712
    1030008 9n76:NF (4.2) BS01 rna N/A GO:0000462 ... P05756 41162712
    1030009 9n76:NG (4.2) BS01 rna N/A GO:0000028 ... P06367 41162712
    1030010 9n76:NH (4.2) BS01 rna N/A GO:0000028 ... P53254 41162712
    1030011 9n76:NH (4.2) BS02 ATP N/A GO:0000028 ... P53254 41162712
    1030012 9n76:NI (4.2) BS01 rna N/A GO:0000028 ... P25368 41162712
    1030013 9n76:NL (4.2) BS01 rna N/A GO:0000154 ... P41819 41162712
    1030014 9n76:NM (4.2) BS01 rna N/A GO:0000462 ... P33442 41162712
    1030015 9n76:NP (4.2) BS01 rna N/A GO:0000054 ... P07280 41162712
    1030016 9n76:NQ (4.2) BS01 rna N/A GO:0000028 ... P35997 41162712
    1030017 9n76:NQ (4.2) BS02 ZN N/A GO:0000028 ... P35997 41162712
    1030018 9n76:NS (4.2) BS01 rna N/A GO:0000462 ... Q04217 41162712
    1030019 9n76:NS (4.2) BS02 ADP N/A GO:0000462 ... Q04217 41162712
    1030020 9n76:OH (4.2) BS01 rna N/A GO:0000028 ... P48589 41162712
    1030021 9n76:OU (4.2) BS01 rna N/A GO:0000028 ... P05759 41162712
    1030022 9n76:SA (4.2) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1030023 9n76:SB (4.2) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1030024 9n76:SB (4.2) BS02 rna N/A GO:0000447 ... Q12499 41162712
    1030025 9n76:SD (4.2) BS01 rna N/A GO:0000451 ... P15646 41162712
    1030026 9n76:SE (4.2) BS01 rna N/A GO:0000245 ... P39990 41162712
    1030027 9n76:SF (4.2) BS01 rna N/A GO:0000245 ... P39990 41162712
    1030028 9n76:SG (4.2) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1030029 9n76:SG (4.2) BS02 peptide N/A GO:0000447 ... Q06506 41162712
    1030030 9n76:SH (4.2) BS01 rna N/A GO:0000447 ... Q08096 41162712
    1030031 9n76:SI (4.2) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1030032 9n76:SI (4.2) BS02 GTP N/A GO:0000462 ... Q08965 41162712
    1030033 9n76:SI (4.2) BS03 MG N/A GO:0000462 ... Q08965 41162712
    1030034 9n76:SJ (4.2) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1030035 9n76:SK (4.2) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1030036 9n76:SL (4.2) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1030037 9n76:SL (4.2) BS02 ZN N/A GO:0000447 ... Q05498 41162712
    1030038 9n76:SM (4.2) BS01 rna N/A GO:0005515 ... P53941 41162712
    1030039 9n76:SP (4.2) BS01 rna N/A GO:0000447 ... P35194 41162712
    1030040 9n76:SQ (4.2) BS01 rna N/A GO:0000447 ... Q12035 41162712
    1030041 9n76:SQ (4.2) BS02 rna N/A GO:0000447 ... Q12035 41162712
    1030042 9n76:SR (4.2) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1030043 9n76:SS (4.2) BS01 rna N/A GO:0000447 ... Q04500 41162712
    1030044 9n76:SS (4.2) BS02 rna N/A GO:0000447 ... Q04500 41162712
    1030045 9n76:ST (4.2) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1030046 9n76:SW (4.2) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1030047 9n76:SY (4.2) BS01 rna N/A GO:0000447 ... P34247 41162712
    1030048 9n76:SY (4.2) BS02 rna N/A GO:0000447 ... P34247 41162712
    1030049 9n76:SZ (4.2) BS01 rna N/A GO:0000447 ... P38333 41162712
    1030050 9n77:L3 (3.94) BS01 rna N/A GO:0000054 ... P0CX55 41162712
    1030051 9n77:L4 (3.94) BS01 rna N/A GO:0002181 ... P0CX35 41162712
    1030052 9n77:L4 (3.94) BS02 peptide N/A GO:0002181 ... P0CX35 41162712
    1030053 9n77:L5 (3.94) BS01 rna N/A GO:0000054 ... P26783 41162712
    1030054 9n77:L6 (3.94) BS01 rna N/A GO:0000462 ... P0CX37 41162712
    1030055 9n77:L7 (3.94) BS01 rna N/A GO:0002181 ... P26786 41162712
    1030056 9n77:L8 (3.94) BS01 rna N/A GO:0000462 ... P0CX39 41162712
    1030057 9n77:L9 (3.94) BS01 rna N/A GO:0000462 ... O13516 41162712
    1030058 9n77:LC (3.94) BS01 rna N/A GO:0000462 ... P0CX51 41162712
    1030059 9n77:LD (3.94) BS01 rna N/A GO:0000028 ... P0CX47 41162712
    1030060 9n77:LE (3.94) BS01 rna N/A GO:0002181 ... P0C0W1 41162712
    1030061 9n77:LF (3.94) BS01 rna N/A GO:0000462 ... P0CX31 41162712
    1030062 9n77:LF (3.94) BS02 peptide N/A GO:0000462 ... P0CX31 41162712
    1030063 9n77:LG (3.94) BS01 rna N/A GO:0000028 ... Q3E7X9 41162712
    1030064 9n77:LH (3.94) BS01 rna N/A GO:0000462 ... Q02931 41162712
    1030065 9n77:LJ (3.94) BS01 rna N/A GO:0000462 ... Q04305 41162712
    1030066 9n77:LJ (3.94) BS02 rna N/A GO:0000462 ... Q04305 41162712
    1030067 9n77:LK (3.94) BS01 rna N/A GO:0000049 ... P38882 41162712
    1030068 9n77:LM (3.94) BS01 rna N/A GO:0000447 ... P42945 41162712
    1030069 9n77:LN (3.94) BS01 rna N/A GO:0000462 ... Q06679 41162712
    1030070 9n77:LO (3.94) BS01 rna N/A GO:0000028 ... P25635 41162712
    1030071 9n77:LQ (3.94) BS01 rna N/A GO:0000447 ... Q12220 41162712
    1030072 9n77:LR (3.94) BS01 rna N/A GO:0000447 ... Q05946 41162712
    1030073 9n77:LS (3.94) BS01 rna N/A GO:0000292 ... P40362 41162712
    1030074 9n77:LS (3.94) BS02 rna N/A GO:0000292 ... P40362 41162712
    1030075 9n77:LT (3.94) BS01 rna N/A GO:0003674 ... Q06078 41162712
    1030076 9n77:NA (3.94) BS01 rna N/A GO:0000447 ... P47083 41162712
    1030077 9n77:NB (3.94) BS01 rna N/A GO:0000447 ... Q12136 41162712
    1030078 9n77:NB (3.94) BS02 rna N/A GO:0000447 ... Q12136 41162712
    1030079 9n77:NF (3.94) BS01 rna N/A GO:0000462 ... P05756 41162712
    1030080 9n77:NG (3.94) BS01 rna N/A GO:0000028 ... P06367 41162712
    1030081 9n77:NL (3.94) BS01 rna N/A GO:0000154 ... P41819 41162712
    1030082 9n77:NL (3.94) BS02 rna N/A GO:0000154 ... P41819 41162712
    1030083 9n77:NM (3.94) BS01 rna N/A GO:0000462 ... P33442 41162712
    1030084 9n77:NP (3.94) BS01 rna N/A GO:0000054 ... P07280 41162712
    1030085 9n77:NQ (3.94) BS01 rna N/A GO:0000028 ... P35997 41162712
    1030086 9n77:NQ (3.94) BS02 ZN N/A GO:0000028 ... P35997 41162712
    1030087 9n77:NS (3.94) BS01 rna N/A GO:0000462 ... Q04217 41162712
    1030088 9n77:NS (3.94) BS02 ADP N/A GO:0000462 ... Q04217 41162712
    1030089 9n77:OH (3.94) BS01 rna N/A GO:0000028 ... P48589 41162712
    1030090 9n77:OU (3.94) BS01 rna N/A GO:0000028 ... P05759 41162712
    1030091 9n77:SA (3.94) BS01 rna N/A GO:0000154 ... Q12460 41162712
    1030092 9n77:SB (3.94) BS01 rna N/A GO:0000447 ... Q12499 41162712
    1030093 9n77:SB (3.94) BS02 rna N/A GO:0000447 ... Q12499 41162712
    1030094 9n77:SD (3.94) BS01 rna N/A GO:0000451 ... P15646 41162712
    1030095 9n77:SE (3.94) BS01 rna N/A GO:0000245 ... P39990 41162712
    1030096 9n77:SF (3.94) BS01 rna N/A GO:0000245 ... P39990 41162712
    1030097 9n77:SG (3.94) BS01 rna N/A GO:0000447 ... Q06506 41162712
    1030098 9n77:SH (3.94) BS01 rna N/A GO:0000447 ... Q08096 41162712
    1030099 9n77:SI (3.94) BS01 rna N/A GO:0000462 ... Q08965 41162712
    1030100 9n77:SI (3.94) BS02 rna N/A GO:0000462 ... Q08965 41162712
    1030101 9n77:SI (3.94) BS03 GTP N/A GO:0000462 ... Q08965 41162712
    1030102 9n77:SI (3.94) BS04 MG N/A GO:0000462 ... Q08965 41162712
    1030103 9n77:SJ (3.94) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1030104 9n77:SK (3.94) BS01 rna N/A GO:0000447 ... Q06287 41162712
    1030105 9n77:SL (3.94) BS01 rna N/A GO:0000447 ... Q05498 41162712
    1030106 9n77:SL (3.94) BS02 ZN N/A GO:0000447 ... Q05498 41162712
    1030107 9n77:SM (3.94) BS01 rna N/A GO:0005515 ... P53941 41162712
    1030108 9n77:SP (3.94) BS01 rna N/A GO:0000447 ... P35194 41162712
    1030109 9n77:SQ (3.94) BS01 rna N/A GO:0000447 ... Q12035 41162712
    1030110 9n77:SQ (3.94) BS02 rna N/A GO:0000447 ... Q12035 41162712
    1030111 9n77:SR (3.94) BS01 rna N/A GO:0000462 ... P0CX29 41162712
    1030112 9n77:SR (3.94) BS02 rna N/A GO:0000462 ... P0CX29 41162712
    1030113 9n77:SS (3.94) BS01 rna N/A GO:0000447 ... Q04500 41162712
    1030114 9n77:SS (3.94) BS02 rna N/A GO:0000447 ... Q04500 41162712
    1030115 9n77:ST (3.94) BS01 rna N/A GO:0000028 ... Q99207 41162712
    1030116 9n77:SW (3.94) BS01 rna N/A GO:0000056 ... Q99216 41162712
    1030117 9n77:SY (3.94) BS01 rna N/A GO:0000447 ... P34247 41162712
    1030118 9n77:SY (3.94) BS02 rna N/A GO:0000447 ... P34247 41162712
    1030119 9n77:SZ (3.94) BS01 rna N/A GO:0000447 ... P38333 41162712
    1030120 9n78:L3 (4.17) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    1030121 9n78:L4 (4.17) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    1030122 9n78:L4 (4.17) BS02 peptide N/A GO:0002181 ... P0CX35 N/A
    1030123 9n78:L5 (4.17) BS01 rna N/A GO:0000054 ... P26783 N/A
    1030124 9n78:L6 (4.17) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    1030125 9n78:L7 (4.17) BS01 rna N/A GO:0002181 ... P26786 N/A
    1030126 9n78:L8 (4.17) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    1030127 9n78:L9 (4.17) BS01 rna N/A GO:0000462 ... O13516 N/A
    1030128 9n78:LC (4.17) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    1030129 9n78:LD (4.17) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    1030130 9n78:LE (4.17) BS01 rna N/A GO:0002181 ... P0C0W1 N/A
    1030131 9n78:LF (4.17) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    1030132 9n78:LF (4.17) BS02 peptide N/A GO:0000462 ... P0CX31 N/A
    1030133 9n78:LG (4.17) BS01 rna N/A GO:0000028 ... Q3E7X9 N/A
    1030134 9n78:LH (4.17) BS01 rna N/A GO:0000462 ... Q02931 N/A
    1030135 9n78:LJ (4.17) BS01 rna N/A GO:0000462 ... Q04305 N/A
    1030136 9n78:LJ (4.17) BS02 rna N/A GO:0000462 ... Q04305 N/A
    1030137 9n78:LM (4.17) BS01 rna N/A GO:0000447 ... P42945 N/A
    1030138 9n78:LN (4.17) BS01 rna N/A GO:0000462 ... Q06679 N/A
    1030139 9n78:LS (4.17) BS01 rna N/A GO:0000292 ... P40362 N/A
    1030140 9n78:LS (4.17) BS02 rna N/A GO:0000292 ... P40362 N/A
    1030141 9n78:NA (4.17) BS01 rna N/A GO:0000447 ... P47083 N/A
    1030142 9n78:NB (4.17) BS01 rna N/A GO:0000447 ... Q12136 N/A
    1030143 9n78:NB (4.17) BS02 rna N/A GO:0000447 ... Q12136 N/A
    1030144 9n78:NF (4.17) BS01 rna N/A GO:0000462 ... P05756 N/A
    1030145 9n78:NG (4.17) BS01 rna N/A GO:0000028 ... P06367 N/A
    1030146 9n78:NL (4.17) BS01 rna N/A GO:0000154 ... P41819 N/A
    1030147 9n78:NL (4.17) BS02 rna N/A GO:0000154 ... P41819 N/A
    1030148 9n78:NM (4.17) BS01 rna N/A GO:0000462 ... P33442 N/A
    1030149 9n78:NP (4.17) BS01 rna N/A GO:0000054 ... P07280 N/A
    1030150 9n78:NQ (4.17) BS01 rna N/A GO:0000028 ... P35997 N/A
    1030151 9n78:NQ (4.17) BS02 ZN N/A GO:0000028 ... P35997 N/A
    1030152 9n78:NS (4.17) BS01 rna N/A GO:0000462 ... Q04217 N/A
    1030153 9n78:OH (4.17) BS01 rna N/A GO:0000028 ... P48589 N/A
    1030154 9n78:OU (4.17) BS01 rna N/A GO:0000028 ... P05759 N/A
    1030155 9n78:SA (4.17) BS01 rna N/A GO:0000154 ... Q12460 N/A
    1030156 9n78:SB (4.17) BS01 rna N/A GO:0000447 ... Q12499 N/A
    1030157 9n78:SD (4.17) BS01 rna N/A GO:0000451 ... P15646 N/A
    1030158 9n78:SE (4.17) BS01 rna N/A GO:0000245 ... P39990 N/A
    1030159 9n78:SF (4.17) BS01 rna N/A GO:0000245 ... P39990 N/A
    1030160 9n78:SG (4.17) BS01 rna N/A GO:0000447 ... Q06506 N/A
    1030161 9n78:SH (4.17) BS01 rna N/A GO:0000447 ... Q08096 N/A
    1030162 9n78:SI (4.17) BS01 rna N/A GO:0000462 ... Q08965 N/A
    1030163 9n78:SI (4.17) BS02 rna N/A GO:0000462 ... Q08965 N/A
    1030164 9n78:SI (4.17) BS03 GTP N/A GO:0000462 ... Q08965 N/A
    1030165 9n78:SI (4.17) BS04 MG N/A GO:0000462 ... Q08965 N/A
    1030166 9n78:SJ (4.17) BS01 rna N/A GO:0000447 ... Q06287 N/A
    1030167 9n78:SK (4.17) BS01 rna N/A GO:0000447 ... Q06287 N/A
    1030168 9n78:SL (4.17) BS01 rna N/A GO:0000447 ... Q05498 N/A
    1030169 9n78:SL (4.17) BS02 ZN N/A GO:0000447 ... Q05498 N/A
    1030170 9n78:SM (4.17) BS01 rna N/A GO:0005515 ... P53941 N/A
    1030171 9n78:SP (4.17) BS01 rna N/A GO:0000447 ... P35194 N/A
    1030172 9n78:SQ (4.17) BS01 rna N/A GO:0000447 ... Q12035 N/A
    1030173 9n78:SQ (4.17) BS02 rna N/A GO:0000447 ... Q12035 N/A
    1030174 9n78:SR (4.17) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    1030175 9n78:SS (4.17) BS01 rna N/A GO:0000447 ... Q04500 N/A
    1030176 9n78:SS (4.17) BS02 rna N/A GO:0000447 ... Q04500 N/A
    1030177 9n78:ST (4.17) BS01 rna N/A GO:0000028 ... Q99207 N/A
    1030178 9n78:SW (4.17) BS01 rna N/A GO:0000056 ... Q99216 N/A
    1030179 9n78:SY (4.17) BS01 rna N/A GO:0000447 ... P34247 N/A
    1030180 9n78:SY (4.17) BS02 rna N/A GO:0000447 ... P34247 N/A
    1030181 9n78:SZ (4.17) BS01 rna N/A GO:0000447 ... P38333 N/A
    1030182 9n79:L3 (3.93) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    1030183 9n79:L4 (3.93) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    1030184 9n79:L5 (3.93) BS01 rna N/A GO:0000054 ... P26783 N/A
    1030185 9n79:L6 (3.93) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    1030186 9n79:L7 (3.93) BS01 rna N/A GO:0002181 ... P26786 N/A
    1030187 9n79:L8 (3.93) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    1030188 9n79:L9 (3.93) BS01 rna N/A GO:0000462 ... O13516 N/A
    1030189 9n79:LC (3.93) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    1030190 9n79:LD (3.93) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    1030191 9n79:LE (3.93) BS01 rna N/A GO:0002181 ... P0C0W1 N/A
    1030192 9n79:LF (3.93) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    1030193 9n79:LG (3.93) BS01 rna N/A GO:0000028 ... Q3E7X9 N/A
    1030194 9n79:NA (3.93) BS01 rna N/A GO:0000447 ... P47083 N/A
    1030195 9n79:NB (3.93) BS01 rna N/A GO:0000447 ... Q12136 N/A
    1030196 9n79:NF (3.93) BS01 rna N/A GO:0000462 ... P05756 N/A
    1030197 9n79:NG (3.93) BS01 rna N/A GO:0000028 ... P06367 N/A
    1030198 9n79:NL (3.93) BS01 rna N/A GO:0000154 ... P41819 N/A
    1030199 9n79:NL (3.93) BS02 rna N/A GO:0000154 ... P41819 N/A
    1030200 9n79:NM (3.93) BS01 rna N/A GO:0000462 ... P33442 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).