SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 5153 5154 5155 5156 5157 5158 5159 5160 5161 5162 5163 5164 5165 5166 5167 5168 5169 5170 5171 5172 5173 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1032401 9nle:su (3.2) BS01 rna N/A GO:0000028 ... P68679 N/A
    1032402 9nlf:1 (3.2) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    1032403 9nlf:13 (3.2) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    1032404 9nlf:14 (3.2) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    1032405 9nlf:14 (3.2) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    1032406 9nlf:15 (3.2) BS01 rna N/A GO:0002181 ... P02413 N/A
    1032407 9nlf:16 (3.2) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    1032408 9nlf:16 (3.2) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    1032409 9nlf:17 (3.2) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    1032410 9nlf:18 (3.2) BS01 rna N/A GO:0002181 ... P0C018 N/A
    1032411 9nlf:18 (3.2) BS02 rna N/A GO:0002181 ... P0C018 N/A
    1032412 9nlf:19 (3.2) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    1032413 9nlf:19 (3.2) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    1032414 9nlf:2 (3.2) BS01 rna N/A GO:0000027 ... P60422 N/A
    1032415 9nlf:2 (3.2) BS02 rna N/A GO:0000027 ... P60422 N/A
    1032416 9nlf:20 (3.2) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    1032417 9nlf:21 (3.2) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    1032418 9nlf:22 (3.2) BS01 rna N/A GO:0002181 ... P61175 N/A
    1032419 9nlf:23 (3.2) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    1032420 9nlf:24 (3.2) BS01 rna N/A GO:0000027 ... P60624 N/A
    1032421 9nlf:25 (3.2) BS01 rna N/A GO:0000027 ... P68919 N/A
    1032422 9nlf:27 (3.2) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    1032423 9nlf:28 (3.2) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    1032424 9nlf:29 (3.2) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    1032425 9nlf:3 (3.2) BS01 rna N/A GO:0000027 ... P60438 N/A
    1032426 9nlf:30 (3.2) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    1032427 9nlf:30 (3.2) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    1032428 9nlf:31 (3.2) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    1032429 9nlf:31 (3.2) BS02 rna N/A GO:0002181 ... P0A7M9 N/A
    1032430 9nlf:32 (3.2) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    1032431 9nlf:33 (3.2) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    1032432 9nlf:34 (3.2) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    1032433 9nlf:35 (3.2) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    1032434 9nlf:36 (3.2) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    1032435 9nlf:4 (3.2) BS01 rna N/A GO:0001070 ... P60723 N/A
    1032436 9nlf:5 (3.2) BS01 rna N/A GO:0000027 ... P62399 N/A
    1032437 9nlf:5 (3.2) BS02 rna N/A GO:0000027 ... P62399 N/A
    1032438 9nlf:6 (3.2) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    1032439 9nlf:9 (3.2) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    1032440 9nlf:Y (3.2) BS01 rna N/A GO:0003747 ... P0A9U3 N/A
    1032441 9nlf:Y (3.2) BS02 rna N/A GO:0003747 ... P0A9U3 N/A
    1032442 9nlf:Y (3.2) BS03 rna N/A GO:0003747 ... P0A9U3 N/A
    1032443 9nlf:Y (3.2) BS04 ATP N/A GO:0003747 ... P0A9U3 N/A
    1032444 9nlf:Y (3.2) BS05 ATP N/A GO:0003747 ... P0A9U3 N/A
    1032445 9nlf:sb (3.2) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    1032446 9nlf:sc (3.2) BS01 rna N/A GO:0003676 ... P0A7V3 N/A
    1032447 9nlf:sd (3.2) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    1032448 9nlf:se (3.2) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    1032449 9nlf:sf (3.2) BS01 rna N/A GO:0003735 ... P02358 N/A
    1032450 9nlf:sg (3.2) BS01 rna N/A GO:0003723 ... P02359 N/A
    1032451 9nlf:sh (3.2) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    1032452 9nlf:si (3.2) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    1032453 9nlf:si (3.2) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    1032454 9nlf:sj (3.2) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    1032455 9nlf:sk (3.2) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    1032456 9nlf:sl (3.2) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    1032457 9nlf:sm (3.2) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    1032458 9nlf:sn (3.2) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    1032459 9nlf:so (3.2) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032460 9nlf:so (3.2) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032461 9nlf:sp (3.2) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    1032462 9nlf:sq (3.2) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    1032463 9nlf:sr (3.2) BS01 rna N/A GO:0003735 ... P0A7T7 N/A
    1032464 9nlf:ss (3.2) BS01 rna N/A GO:0003723 ... P0A7U3 N/A
    1032465 9nlf:st (3.2) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    1032466 9nlf:su (3.2) BS01 rna N/A GO:0000028 ... P68679 N/A
    1032467 9nlg:A (1.64) BS01 ZN N/A N/A A0A2P0QGK5 40473611
    1032468 9nlg:A (1.64) BS02 4UR N/A N/A A0A2P0QGK5 40473611
    1032469 9nlg:B (1.64) BS01 4UR N/A N/A A0A2P0QGK5 40473611
    1032470 9nlg:B (1.64) BS02 ZN N/A N/A A0A2P0QGK5 40473611
    1032471 9nlg:B (1.64) BS03 4UR N/A N/A A0A2P0QGK5 40473611
    1032472 9nlg:C (1.64) BS01 ZN N/A N/A A0A2P0QGK5 40473611
    1032473 9nlg:C (1.64) BS02 4UR N/A N/A A0A2P0QGK5 40473611
    1032474 9nlg:D (1.64) BS01 4UR N/A N/A A0A2P0QGK5 40473611
    1032475 9nlg:D (1.64) BS02 ZN N/A N/A A0A2P0QGK5 40473611
    1032476 9nlg:D (1.64) BS03 4UR N/A N/A A0A2P0QGK5 40473611
    1032477 9nlh:1 (3.1) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    1032478 9nlh:13 (3.1) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    1032479 9nlh:14 (3.1) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    1032480 9nlh:14 (3.1) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    1032481 9nlh:15 (3.1) BS01 rna N/A GO:0002181 ... P02413 N/A
    1032482 9nlh:16 (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    1032483 9nlh:17 (3.1) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    1032484 9nlh:18 (3.1) BS01 rna N/A GO:0002181 ... P0C018 N/A
    1032485 9nlh:18 (3.1) BS02 rna N/A GO:0002181 ... P0C018 N/A
    1032486 9nlh:19 (3.1) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    1032487 9nlh:19 (3.1) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    1032488 9nlh:2 (3.1) BS01 rna N/A GO:0000027 ... P60422 N/A
    1032489 9nlh:20 (3.1) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    1032490 9nlh:21 (3.1) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    1032491 9nlh:22 (3.1) BS01 rna N/A GO:0002181 ... P61175 N/A
    1032492 9nlh:23 (3.1) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    1032493 9nlh:24 (3.1) BS01 rna N/A GO:0000027 ... P60624 N/A
    1032494 9nlh:25 (3.1) BS01 rna N/A GO:0000027 ... P68919 N/A
    1032495 9nlh:27 (3.1) BS01 rna N/A GO:0003735 ... P0A7L8 N/A
    1032496 9nlh:27 (3.1) BS02 rna N/A GO:0003735 ... P0A7L8 N/A
    1032497 9nlh:28 (3.1) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    1032498 9nlh:29 (3.1) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    1032499 9nlh:3 (3.1) BS01 rna N/A GO:0000027 ... P60438 N/A
    1032500 9nlh:30 (3.1) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    1032501 9nlh:32 (3.1) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    1032502 9nlh:33 (3.1) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    1032503 9nlh:34 (3.1) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    1032504 9nlh:35 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    1032505 9nlh:36 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    1032506 9nlh:4 (3.1) BS01 rna N/A GO:0001070 ... P60723 N/A
    1032507 9nlh:5 (3.1) BS01 rna N/A GO:0000027 ... P62399 N/A
    1032508 9nlh:5 (3.1) BS02 rna N/A GO:0000027 ... P62399 N/A
    1032509 9nlh:6 (3.1) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    1032510 9nlh:9 (3.1) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    1032511 9nlh:H (3.1) BS01 rna N/A GO:0005524 ... P63389 N/A
    1032512 9nlh:H (3.1) BS02 rna N/A GO:0005524 ... P63389 N/A
    1032513 9nlh:H (3.1) BS03 ATP N/A GO:0005524 ... P63389 N/A
    1032514 9nlh:H (3.1) BS04 ATP N/A GO:0005524 ... P63389 N/A
    1032515 9nlh:sb (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    1032516 9nlh:sc (3.1) BS01 rna N/A GO:0003676 ... P0A7V3 N/A
    1032517 9nlh:sd (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    1032518 9nlh:se (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    1032519 9nlh:sf (3.1) BS01 rna N/A GO:0003735 ... P02358 N/A
    1032520 9nlh:sg (3.1) BS01 rna N/A GO:0003723 ... P02359 N/A
    1032521 9nlh:sh (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    1032522 9nlh:si (3.1) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    1032523 9nlh:si (3.1) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    1032524 9nlh:sj (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    1032525 9nlh:sk (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    1032526 9nlh:sl (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    1032527 9nlh:sm (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    1032528 9nlh:sn (3.1) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    1032529 9nlh:so (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032530 9nlh:so (3.1) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032531 9nlh:sp (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    1032532 9nlh:sq (3.1) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    1032533 9nlh:sr (3.1) BS01 rna N/A GO:0003735 ... P0A7T7 N/A
    1032534 9nlh:ss (3.1) BS01 rna N/A GO:0003723 ... P0A7U3 N/A
    1032535 9nlh:st (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    1032536 9nlh:su (3.1) BS01 rna N/A GO:0000028 ... P68679 N/A
    1032537 9nlj:1 (3.1) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    1032538 9nlj:13 (3.1) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    1032539 9nlj:14 (3.1) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    1032540 9nlj:15 (3.1) BS01 rna N/A GO:0002181 ... P02413 N/A
    1032541 9nlj:16 (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    1032542 9nlj:16 (3.1) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    1032543 9nlj:17 (3.1) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    1032544 9nlj:18 (3.1) BS01 rna N/A GO:0002181 ... P0C018 N/A
    1032545 9nlj:18 (3.1) BS02 rna N/A GO:0002181 ... P0C018 N/A
    1032546 9nlj:19 (3.1) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    1032547 9nlj:19 (3.1) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    1032548 9nlj:2 (3.1) BS01 rna N/A GO:0000027 ... P60422 N/A
    1032549 9nlj:20 (3.1) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    1032550 9nlj:21 (3.1) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    1032551 9nlj:22 (3.1) BS01 rna N/A GO:0002181 ... P61175 N/A
    1032552 9nlj:23 (3.1) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    1032553 9nlj:24 (3.1) BS01 rna N/A GO:0000027 ... P60624 N/A
    1032554 9nlj:25 (3.1) BS01 rna N/A GO:0000027 ... P68919 N/A
    1032555 9nlj:25 (3.1) BS02 rna N/A GO:0000027 ... P68919 N/A
    1032556 9nlj:27 (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    1032557 9nlj:27 (3.1) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    1032558 9nlj:27 (3.1) BS03 rna N/A GO:0000027 ... P0A7L8 N/A
    1032559 9nlj:28 (3.1) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    1032560 9nlj:29 (3.1) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    1032561 9nlj:3 (3.1) BS01 rna N/A GO:0000027 ... P60438 N/A
    1032562 9nlj:30 (3.1) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    1032563 9nlj:31 (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    1032564 9nlj:32 (3.1) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    1032565 9nlj:33 (3.1) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    1032566 9nlj:34 (3.1) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    1032567 9nlj:35 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    1032568 9nlj:36 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    1032569 9nlj:4 (3.1) BS01 rna N/A GO:0001070 ... P60723 N/A
    1032570 9nlj:5 (3.1) BS01 rna N/A GO:0000027 ... P62399 N/A
    1032571 9nlj:5 (3.1) BS02 rna N/A GO:0000027 ... P62399 N/A
    1032572 9nlj:6 (3.1) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    1032573 9nlj:9 (3.1) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    1032574 9nlj:U (3.1) BS01 rna N/A GO:0003677 ... P43672 N/A
    1032575 9nlj:U (3.1) BS02 rna N/A GO:0003677 ... P43672 N/A
    1032576 9nlj:U (3.1) BS03 rna N/A GO:0003677 ... P43672 N/A
    1032577 9nlj:U (3.1) BS04 ATP N/A GO:0003677 ... P43672 N/A
    1032578 9nlj:U (3.1) BS05 ATP N/A GO:0003677 ... P43672 N/A
    1032579 9nlj:sb (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    1032580 9nlj:sc (3.1) BS01 rna N/A GO:0003676 ... P0A7V3 N/A
    1032581 9nlj:sd (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    1032582 9nlj:se (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    1032583 9nlj:sf (3.1) BS01 rna N/A GO:0003735 ... P02358 N/A
    1032584 9nlj:sg (3.1) BS01 rna N/A GO:0003723 ... P02359 N/A
    1032585 9nlj:sh (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    1032586 9nlj:si (3.1) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    1032587 9nlj:sj (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    1032588 9nlj:sk (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    1032589 9nlj:sl (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    1032590 9nlj:sm (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    1032591 9nlj:sn (3.1) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    1032592 9nlj:so (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032593 9nlj:so (3.1) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032594 9nlj:sp (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    1032595 9nlj:sq (3.1) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    1032596 9nlj:sr (3.1) BS01 rna N/A GO:0003735 ... P0A7T7 N/A
    1032597 9nlj:ss (3.1) BS01 rna N/A GO:0003723 ... P0A7U3 N/A
    1032598 9nlj:st (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    1032599 9nlj:su (3.1) BS01 rna N/A GO:0000028 ... P68679 N/A
    1032600 9nln:A (3.0) BS01 rna N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).