SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1032601 9nln:B (3.0) BS01 rna N/A N/A N/A N/A
    1032602 9nln:H (3.0) BS01 rna N/A N/A N/A N/A
    1032603 9nln:H (3.0) BS02 rna N/A N/A N/A N/A
    1032604 9nln:L (3.0) BS01 rna N/A N/A N/A N/A
    1032605 9nlo:A (2.32) BS01 peptide N/A N/A P00803 41207487
    1032606 9nlo:A (2.32) BS02 M12 N/A N/A P00803 41207487
    1032607 9nlo:B (2.32) BS01 peptide N/A N/A P00803 41207487
    1032608 9nlo:B (2.32) BS02 M12 N/A N/A P00803 41207487
    1032609 9nlp:A (3.53) BS01 A1BYY N/A GO:0003676 ... P12497 40304150
    1032610 9nlq:1 (3.3) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    1032611 9nlq:13 (3.3) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    1032612 9nlq:14 (3.3) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    1032613 9nlq:14 (3.3) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    1032614 9nlq:15 (3.3) BS01 rna N/A GO:0002181 ... P02413 N/A
    1032615 9nlq:16 (3.3) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    1032616 9nlq:16 (3.3) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    1032617 9nlq:17 (3.3) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    1032618 9nlq:18 (3.3) BS01 rna N/A GO:0002181 ... P0C018 N/A
    1032619 9nlq:18 (3.3) BS02 rna N/A GO:0002181 ... P0C018 N/A
    1032620 9nlq:19 (3.3) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    1032621 9nlq:19 (3.3) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    1032622 9nlq:2 (3.3) BS01 rna N/A GO:0000027 ... P60422 N/A
    1032623 9nlq:20 (3.3) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    1032624 9nlq:21 (3.3) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    1032625 9nlq:22 (3.3) BS01 rna N/A GO:0002181 ... P61175 N/A
    1032626 9nlq:23 (3.3) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    1032627 9nlq:24 (3.3) BS01 rna N/A GO:0000027 ... P60624 N/A
    1032628 9nlq:25 (3.3) BS01 rna N/A GO:0000027 ... P68919 N/A
    1032629 9nlq:27 (3.3) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    1032630 9nlq:28 (3.3) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    1032631 9nlq:29 (3.3) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    1032632 9nlq:3 (3.3) BS01 rna N/A GO:0000027 ... P60438 N/A
    1032633 9nlq:30 (3.3) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    1032634 9nlq:31 (3.3) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    1032635 9nlq:32 (3.3) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    1032636 9nlq:33 (3.3) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    1032637 9nlq:34 (3.3) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    1032638 9nlq:35 (3.3) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    1032639 9nlq:36 (3.3) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    1032640 9nlq:4 (3.3) BS01 rna N/A GO:0001070 ... P60723 N/A
    1032641 9nlq:5 (3.3) BS01 rna N/A GO:0000027 ... P62399 N/A
    1032642 9nlq:5 (3.3) BS02 rna N/A GO:0000027 ... P62399 N/A
    1032643 9nlq:6 (3.3) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    1032644 9nlq:9 (3.3) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    1032645 9nlq:Y (3.3) BS01 rna N/A GO:0003747 ... P0A9U3 N/A
    1032646 9nlq:Y (3.3) BS02 rna N/A GO:0003747 ... P0A9U3 N/A
    1032647 9nlq:Y (3.3) BS03 rna N/A GO:0003747 ... P0A9U3 N/A
    1032648 9nlq:Y (3.3) BS04 ATP N/A GO:0003747 ... P0A9U3 N/A
    1032649 9nlq:Y (3.3) BS05 ATP N/A GO:0003747 ... P0A9U3 N/A
    1032650 9nlq:sb (3.3) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    1032651 9nlq:sc (3.3) BS01 rna N/A GO:0003676 ... P0A7V3 N/A
    1032652 9nlq:sd (3.3) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    1032653 9nlq:se (3.3) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    1032654 9nlq:sf (3.3) BS01 rna N/A GO:0003735 ... P02358 N/A
    1032655 9nlq:sg (3.3) BS01 rna N/A GO:0003723 ... P02359 N/A
    1032656 9nlq:sh (3.3) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    1032657 9nlq:si (3.3) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    1032658 9nlq:si (3.3) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    1032659 9nlq:sj (3.3) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    1032660 9nlq:sk (3.3) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    1032661 9nlq:sl (3.3) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    1032662 9nlq:sm (3.3) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    1032663 9nlq:sn (3.3) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    1032664 9nlq:so (3.3) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032665 9nlq:so (3.3) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032666 9nlq:sp (3.3) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    1032667 9nlq:sq (3.3) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    1032668 9nlq:sr (3.3) BS01 rna N/A GO:0003735 ... P0A7T7 N/A
    1032669 9nlq:ss (3.3) BS01 rna N/A GO:0003723 ... P0A7U3 N/A
    1032670 9nlq:st (3.3) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    1032671 9nlq:su (3.3) BS01 rna N/A GO:0000028 ... P68679 N/A
    1032672 9nlr:A (2.3) BS01 ADP N/A N/A P15104 N/A
    1032673 9nlr:A (2.3) BS02 MN N/A N/A P15104 N/A
    1032674 9nlr:A (2.3) BS03 MN N/A N/A P15104 N/A
    1032675 9nlr:A (2.3) BS04 MN N/A N/A P15104 N/A
    1032676 9nlr:B (2.3) BS01 ADP N/A N/A P15104 N/A
    1032677 9nlr:B (2.3) BS02 MN N/A N/A P15104 N/A
    1032678 9nlr:B (2.3) BS03 MN N/A N/A P15104 N/A
    1032679 9nlr:B (2.3) BS04 MN N/A N/A P15104 N/A
    1032680 9nlr:C (2.3) BS01 ADP N/A N/A P15104 N/A
    1032681 9nlr:C (2.3) BS02 MN N/A N/A P15104 N/A
    1032682 9nlr:C (2.3) BS03 MN N/A N/A P15104 N/A
    1032683 9nlr:C (2.3) BS04 MN N/A N/A P15104 N/A
    1032684 9nlr:D (2.3) BS01 ADP N/A N/A P15104 N/A
    1032685 9nlr:D (2.3) BS02 MN N/A N/A P15104 N/A
    1032686 9nlr:D (2.3) BS03 MN N/A N/A P15104 N/A
    1032687 9nlr:D (2.3) BS04 MN N/A N/A P15104 N/A
    1032688 9nlr:E (2.3) BS01 ADP N/A N/A P15104 N/A
    1032689 9nlr:E (2.3) BS02 MN N/A N/A P15104 N/A
    1032690 9nlr:E (2.3) BS03 MN N/A N/A P15104 N/A
    1032691 9nlr:E (2.3) BS04 MN N/A N/A P15104 N/A
    1032692 9nlr:F (2.3) BS01 ADP N/A N/A P15104 N/A
    1032693 9nlr:F (2.3) BS02 MN N/A N/A P15104 N/A
    1032694 9nlr:F (2.3) BS03 MN N/A N/A P15104 N/A
    1032695 9nlr:F (2.3) BS04 MN N/A N/A P15104 N/A
    1032696 9nlr:G (2.3) BS01 ADP N/A N/A P15104 N/A
    1032697 9nlr:G (2.3) BS02 MN N/A N/A P15104 N/A
    1032698 9nlr:G (2.3) BS03 MN N/A N/A P15104 N/A
    1032699 9nlr:G (2.3) BS04 MN N/A N/A P15104 N/A
    1032700 9nlr:H (2.3) BS01 ADP N/A N/A P15104 N/A
    1032701 9nlr:H (2.3) BS02 MN N/A N/A P15104 N/A
    1032702 9nlr:H (2.3) BS03 MN N/A N/A P15104 N/A
    1032703 9nlr:H (2.3) BS04 MN N/A N/A P15104 N/A
    1032704 9nlr:I (2.3) BS01 ADP N/A N/A P15104 N/A
    1032705 9nlr:I (2.3) BS02 MN N/A N/A P15104 N/A
    1032706 9nlr:I (2.3) BS03 MN N/A N/A P15104 N/A
    1032707 9nlr:I (2.3) BS04 MN N/A N/A P15104 N/A
    1032708 9nlr:J (2.3) BS01 ADP N/A N/A P15104 N/A
    1032709 9nlr:J (2.3) BS02 MN N/A N/A P15104 N/A
    1032710 9nlr:J (2.3) BS03 MN N/A N/A P15104 N/A
    1032711 9nlr:J (2.3) BS04 MN N/A N/A P15104 N/A
    1032712 9nlr:K (2.3) BS01 ADP N/A N/A P15104 N/A
    1032713 9nlr:K (2.3) BS02 MN N/A N/A P15104 N/A
    1032714 9nlr:K (2.3) BS03 MN N/A N/A P15104 N/A
    1032715 9nlr:K (2.3) BS04 MN N/A N/A P15104 N/A
    1032716 9nlr:L (2.3) BS01 ADP N/A N/A P15104 N/A
    1032717 9nlr:L (2.3) BS02 MN N/A N/A P15104 N/A
    1032718 9nlr:L (2.3) BS03 MN N/A N/A P15104 N/A
    1032719 9nlr:L (2.3) BS04 MN N/A N/A P15104 N/A
    1032720 9nlr:M (2.3) BS01 ADP N/A N/A P15104 N/A
    1032721 9nlr:M (2.3) BS02 MN N/A N/A P15104 N/A
    1032722 9nlr:M (2.3) BS03 MN N/A N/A P15104 N/A
    1032723 9nlr:M (2.3) BS04 MN N/A N/A P15104 N/A
    1032724 9nlr:N (2.3) BS01 ADP N/A N/A P15104 N/A
    1032725 9nlr:N (2.3) BS02 MN N/A N/A P15104 N/A
    1032726 9nlr:N (2.3) BS03 MN N/A N/A P15104 N/A
    1032727 9nlr:N (2.3) BS04 MN N/A N/A P15104 N/A
    1032728 9nlr:O (2.3) BS01 ADP N/A N/A P15104 N/A
    1032729 9nlr:O (2.3) BS02 MN N/A N/A P15104 N/A
    1032730 9nlr:O (2.3) BS03 MN N/A N/A P15104 N/A
    1032731 9nlr:O (2.3) BS04 MN N/A N/A P15104 N/A
    1032732 9nlr:P (2.3) BS01 ADP N/A N/A P15104 N/A
    1032733 9nlr:P (2.3) BS02 MN N/A N/A P15104 N/A
    1032734 9nlr:P (2.3) BS03 MN N/A N/A P15104 N/A
    1032735 9nlr:P (2.3) BS04 MN N/A N/A P15104 N/A
    1032736 9nlr:Q (2.3) BS01 ADP N/A N/A P15104 N/A
    1032737 9nlr:Q (2.3) BS02 MN N/A N/A P15104 N/A
    1032738 9nlr:Q (2.3) BS03 MN N/A N/A P15104 N/A
    1032739 9nlr:Q (2.3) BS04 MN N/A N/A P15104 N/A
    1032740 9nlr:R (2.3) BS01 ADP N/A N/A P15104 N/A
    1032741 9nlr:R (2.3) BS02 MN N/A N/A P15104 N/A
    1032742 9nlr:R (2.3) BS03 MN N/A N/A P15104 N/A
    1032743 9nlr:R (2.3) BS04 MN N/A N/A P15104 N/A
    1032744 9nlr:S (2.3) BS01 ADP N/A N/A P15104 N/A
    1032745 9nlr:S (2.3) BS02 MN N/A N/A P15104 N/A
    1032746 9nlr:S (2.3) BS03 MN N/A N/A P15104 N/A
    1032747 9nlr:S (2.3) BS04 MN N/A N/A P15104 N/A
    1032748 9nlr:T (2.3) BS01 ADP N/A N/A P15104 N/A
    1032749 9nlr:T (2.3) BS02 MN N/A N/A P15104 N/A
    1032750 9nlr:T (2.3) BS03 MN N/A N/A P15104 N/A
    1032751 9nlr:T (2.3) BS04 MN N/A N/A P15104 N/A
    1032752 9nls:1 (3.3) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    1032753 9nls:13 (3.3) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    1032754 9nls:14 (3.3) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    1032755 9nls:14 (3.3) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    1032756 9nls:15 (3.3) BS01 rna N/A GO:0002181 ... P02413 N/A
    1032757 9nls:16 (3.3) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    1032758 9nls:16 (3.3) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    1032759 9nls:17 (3.3) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    1032760 9nls:18 (3.3) BS01 rna N/A GO:0002181 ... P0C018 N/A
    1032761 9nls:18 (3.3) BS02 rna N/A GO:0002181 ... P0C018 N/A
    1032762 9nls:19 (3.3) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    1032763 9nls:19 (3.3) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    1032764 9nls:2 (3.3) BS01 rna N/A GO:0000027 ... P60422 N/A
    1032765 9nls:20 (3.3) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    1032766 9nls:21 (3.3) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    1032767 9nls:22 (3.3) BS01 rna N/A GO:0002181 ... P61175 N/A
    1032768 9nls:23 (3.3) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    1032769 9nls:24 (3.3) BS01 rna N/A GO:0000027 ... P60624 N/A
    1032770 9nls:25 (3.3) BS01 rna N/A GO:0000027 ... P68919 N/A
    1032771 9nls:27 (3.3) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    1032772 9nls:27 (3.3) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    1032773 9nls:28 (3.3) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    1032774 9nls:29 (3.3) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    1032775 9nls:3 (3.3) BS01 rna N/A GO:0000027 ... P60438 N/A
    1032776 9nls:30 (3.3) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    1032777 9nls:30 (3.3) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    1032778 9nls:31 (3.3) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    1032779 9nls:32 (3.3) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    1032780 9nls:33 (3.3) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    1032781 9nls:34 (3.3) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    1032782 9nls:35 (3.3) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    1032783 9nls:36 (3.3) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    1032784 9nls:36 (3.3) BS02 ZN N/A GO:0002181 ... P0A7Q6 N/A
    1032785 9nls:4 (3.3) BS01 rna N/A GO:0001070 ... P60723 N/A
    1032786 9nls:5 (3.3) BS01 rna N/A GO:0000027 ... P62399 N/A
    1032787 9nls:5 (3.3) BS02 rna N/A GO:0000027 ... P62399 N/A
    1032788 9nls:6 (3.3) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    1032789 9nls:9 (3.3) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    1032790 9nls:Y (3.3) BS01 rna N/A GO:0003747 ... P0A9U3 N/A
    1032791 9nls:Y (3.3) BS02 rna N/A GO:0003747 ... P0A9U3 N/A
    1032792 9nls:Y (3.3) BS03 rna N/A GO:0003747 ... P0A9U3 N/A
    1032793 9nls:Y (3.3) BS04 ATP N/A GO:0003747 ... P0A9U3 N/A
    1032794 9nls:Y (3.3) BS05 ATP N/A GO:0003747 ... P0A9U3 N/A
    1032795 9nls:sb (3.3) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    1032796 9nls:sc (3.3) BS01 rna N/A GO:0003676 ... P0A7V3 N/A
    1032797 9nls:sd (3.3) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    1032798 9nls:se (3.3) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    1032799 9nls:sf (3.3) BS01 rna N/A GO:0003735 ... P02358 N/A
    1032800 9nls:sg (3.3) BS01 rna N/A GO:0003723 ... P02359 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).