SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1032801 9nls:sh (3.3) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    1032802 9nls:si (3.3) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    1032803 9nls:si (3.3) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    1032804 9nls:sj (3.3) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    1032805 9nls:sk (3.3) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    1032806 9nls:sl (3.3) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    1032807 9nls:sm (3.3) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    1032808 9nls:sn (3.3) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    1032809 9nls:so (3.3) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032810 9nls:so (3.3) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    1032811 9nls:sp (3.3) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    1032812 9nls:sq (3.3) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    1032813 9nls:sr (3.3) BS01 rna N/A GO:0003735 ... P0A7T7 N/A
    1032814 9nls:ss (3.3) BS01 rna N/A GO:0003723 ... P0A7U3 N/A
    1032815 9nls:st (3.3) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    1032816 9nls:su (3.3) BS01 rna N/A GO:0000028 ... P68679 N/A
    1032817 9nlu:A (4.29) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032818 9nlu:A (4.29) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032819 9nlu:A (4.29) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032820 9nlu:B (4.29) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032821 9nlu:B (4.29) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032822 9nlu:B (4.29) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032823 9nlu:C (4.29) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032824 9nlu:C (4.29) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032825 9nlu:D (4.29) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032826 9nlu:D (4.29) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032827 9nlu:E (4.29) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032828 9nlu:E (4.29) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032829 9nlu:F (4.29) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032830 9nlv:A (2.6) BS01 rna N/A N/A A0A6D0I497 40436039
    1032831 9nlv:B (2.6) BS01 rna N/A N/A A0A6D0I497 40436039
    1032832 9nlv:C (2.6) BS01 rna N/A N/A A0A6D0I497 40436039
    1032833 9nlv:D (2.6) BS01 rna N/A N/A A0A6D0I497 40436039
    1032834 9nlv:E (2.6) BS01 rna N/A N/A A0A6D0I497 40436039
    1032835 9nlv:F (2.6) BS01 rna N/A N/A A0A6D0I497 40436039
    1032836 9nlw:A (3.73) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032837 9nlw:A (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032838 9nlw:A (3.73) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032839 9nlw:B (3.73) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032840 9nlw:B (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032841 9nlw:B (3.73) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032842 9nlw:C (3.73) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032843 9nlw:C (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032844 9nlw:D (3.73) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032845 9nlw:D (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032846 9nlw:E (3.73) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032847 9nlw:E (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032848 9nlw:F (3.73) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032849 9nlx:A (3.2) BS01 rna N/A N/A A0A8F5N3I9 40436039
    1032850 9nlx:B (3.2) BS01 rna N/A N/A A0A8F5N3I9 40436039
    1032851 9nlx:C (3.2) BS01 rna N/A N/A A0A8F5N3I9 40436039
    1032852 9nly:A (3.75) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032853 9nly:A (3.75) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032854 9nly:A (3.75) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032855 9nly:B (3.75) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032856 9nly:B (3.75) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032857 9nly:B (3.75) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032858 9nly:C (3.75) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032859 9nly:C (3.75) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032860 9nly:C (3.75) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032861 9nly:D (3.75) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032862 9nly:D (3.75) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032863 9nly:E (3.75) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032864 9nly:E (3.75) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032865 9nly:F (3.75) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032866 9nlz:A (4.13) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032867 9nlz:A (4.13) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032868 9nlz:A (4.13) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032869 9nlz:B (4.13) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032870 9nlz:B (4.13) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032871 9nlz:B (4.13) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032872 9nlz:C (4.13) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032873 9nlz:C (4.13) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032874 9nlz:C (4.13) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032875 9nlz:D (4.13) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032876 9nlz:D (4.13) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032877 9nlz:E (4.13) BS01 ADP N/A GO:0000045 ... P18759 40604310
    1032878 9nlz:E (4.13) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032879 9nlz:F (4.13) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032880 9nm0:A (2.59) BS01 VO7 N/A GO:0004672 ... P00533 40801664
    1032881 9nm1:A (3.4) BS01 peptide N/A GO:0000045 ... P18759 40604310
    1032882 9nm1:A (3.4) BS02 ADP N/A GO:0000045 ... P18759 40604310
    1032883 9nm1:A (3.4) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032884 9nm1:B (3.4) BS01 peptide N/A GO:0000045 ... P18759 40604310
    1032885 9nm1:B (3.4) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032886 9nm1:B (3.4) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032887 9nm1:B (3.4) BS04 ATP N/A GO:0000045 ... P18759 40604310
    1032888 9nm1:C (3.4) BS01 peptide N/A GO:0000045 ... P18759 40604310
    1032889 9nm1:C (3.4) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032890 9nm1:C (3.4) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032891 9nm1:D (3.4) BS01 peptide N/A GO:0000045 ... P18759 40604310
    1032892 9nm1:D (3.4) BS02 ATP N/A GO:0000045 ... P18759 40604310
    1032893 9nm1:D (3.4) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032894 9nm1:E (3.4) BS01 peptide N/A GO:0000045 ... P18759 40604310
    1032895 9nm1:E (3.4) BS02 ADP N/A GO:0000045 ... P18759 40604310
    1032896 9nm1:E (3.4) BS03 ATP N/A GO:0000045 ... P18759 40604310
    1032897 9nm1:F (3.4) BS01 ATP N/A GO:0000045 ... P18759 40604310
    1032898 9nm3:A (2.65) BS01 rna N/A GO:0003723 ... Q9N5M6 40769718
    1032899 9nm5:A (1.85) BS01 ADP N/A N/A P15104 N/A
    1032900 9nm5:A (1.85) BS02 MN N/A N/A P15104 N/A
    1032901 9nm5:A (1.85) BS03 MN N/A N/A P15104 N/A
    1032902 9nm5:A (1.85) BS04 MN N/A N/A P15104 N/A
    1032903 9nm5:A (1.85) BS05 P3P N/A N/A P15104 N/A
    1032904 9nm5:B (1.85) BS01 ADP N/A N/A P15104 N/A
    1032905 9nm5:B (1.85) BS02 MN N/A N/A P15104 N/A
    1032906 9nm5:B (1.85) BS03 MN N/A N/A P15104 N/A
    1032907 9nm5:B (1.85) BS04 MN N/A N/A P15104 N/A
    1032908 9nm5:B (1.85) BS05 P3P N/A N/A P15104 N/A
    1032909 9nm5:C (1.85) BS01 ADP N/A N/A P15104 N/A
    1032910 9nm5:C (1.85) BS02 MN N/A N/A P15104 N/A
    1032911 9nm5:C (1.85) BS03 MN N/A N/A P15104 N/A
    1032912 9nm5:C (1.85) BS04 MN N/A N/A P15104 N/A
    1032913 9nm5:C (1.85) BS05 P3P N/A N/A P15104 N/A
    1032914 9nm5:D (1.85) BS01 ADP N/A N/A P15104 N/A
    1032915 9nm5:D (1.85) BS02 MN N/A N/A P15104 N/A
    1032916 9nm5:D (1.85) BS03 MN N/A N/A P15104 N/A
    1032917 9nm5:D (1.85) BS04 MN N/A N/A P15104 N/A
    1032918 9nm5:D (1.85) BS05 P3P N/A N/A P15104 N/A
    1032919 9nm5:E (1.85) BS01 ADP N/A N/A P15104 N/A
    1032920 9nm5:E (1.85) BS02 MN N/A N/A P15104 N/A
    1032921 9nm5:E (1.85) BS03 MN N/A N/A P15104 N/A
    1032922 9nm5:E (1.85) BS04 MN N/A N/A P15104 N/A
    1032923 9nm5:E (1.85) BS05 P3P N/A N/A P15104 N/A
    1032924 9nm5:F (1.85) BS01 ADP N/A N/A P15104 N/A
    1032925 9nm5:F (1.85) BS02 MN N/A N/A P15104 N/A
    1032926 9nm5:F (1.85) BS03 MN N/A N/A P15104 N/A
    1032927 9nm5:F (1.85) BS04 MN N/A N/A P15104 N/A
    1032928 9nm5:F (1.85) BS05 P3P N/A N/A P15104 N/A
    1032929 9nm5:G (1.85) BS01 ADP N/A N/A P15104 N/A
    1032930 9nm5:G (1.85) BS02 MN N/A N/A P15104 N/A
    1032931 9nm5:G (1.85) BS03 MN N/A N/A P15104 N/A
    1032932 9nm5:G (1.85) BS04 MN N/A N/A P15104 N/A
    1032933 9nm5:G (1.85) BS05 P3P N/A N/A P15104 N/A
    1032934 9nm5:H (1.85) BS01 ADP N/A N/A P15104 N/A
    1032935 9nm5:H (1.85) BS02 MN N/A N/A P15104 N/A
    1032936 9nm5:H (1.85) BS03 MN N/A N/A P15104 N/A
    1032937 9nm5:H (1.85) BS04 MN N/A N/A P15104 N/A
    1032938 9nm5:H (1.85) BS05 P3P N/A N/A P15104 N/A
    1032939 9nm5:I (1.85) BS01 ADP N/A N/A P15104 N/A
    1032940 9nm5:I (1.85) BS02 MN N/A N/A P15104 N/A
    1032941 9nm5:I (1.85) BS03 MN N/A N/A P15104 N/A
    1032942 9nm5:I (1.85) BS04 MN N/A N/A P15104 N/A
    1032943 9nm5:I (1.85) BS05 P3P N/A N/A P15104 N/A
    1032944 9nm5:J (1.85) BS01 ADP N/A N/A P15104 N/A
    1032945 9nm5:J (1.85) BS02 MN N/A N/A P15104 N/A
    1032946 9nm5:J (1.85) BS03 MN N/A N/A P15104 N/A
    1032947 9nm5:J (1.85) BS04 MN N/A N/A P15104 N/A
    1032948 9nm5:J (1.85) BS05 P3P N/A N/A P15104 N/A
    1032949 9nmc:A (2.2) BS01 A1BY2 N/A N/A P08515
    P0DTD1
    N/A
    1032950 9nmd:A (2.4) BS01 A1BY1 N/A N/A P08515
    P0DTD1
    N/A
    1032951 9nme:A (1.6) BS01 A1BY3 N/A N/A P08515
    P0DTD1
    N/A
    1032952 9nmf:A (1.8) BS01 A1BY4 N/A N/A P08515
    P0DTD1
    N/A
    1032953 9nmf:B (1.8) BS01 A1BY4 N/A N/A P08515
    P0DTD1
    N/A
    1032954 9nmg:A (2.0) BS01 A1BY5 N/A N/A P08515
    P0DTD1
    N/A
    1032955 9nmg:B (2.0) BS01 A1BY5 N/A N/A P08515
    P0DTD1
    N/A
    1032956 9nmh:A (2.5) BS01 A1BY6 N/A N/A P08515
    P0DTD1
    N/A
    1032957 9nmn:A (3.09) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032958 9nmn:A (3.09) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032959 9nmn:A (3.09) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032960 9nmn:A (3.09) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032961 9nmn:A (3.09) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032962 9nmn:B (3.09) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032963 9nmn:B (3.09) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032964 9nmn:B (3.09) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032965 9nmn:B (3.09) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032966 9nmn:B (3.09) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032967 9nmn:C (3.09) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032968 9nmn:C (3.09) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032969 9nmn:C (3.09) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032970 9nmn:C (3.09) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032971 9nmn:C (3.09) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032972 9nmn:D (3.09) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032973 9nmn:D (3.09) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032974 9nmn:D (3.09) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032975 9nmn:D (3.09) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032976 9nmn:D (3.09) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032977 9nmo:A (2.4) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032978 9nmo:A (2.4) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032979 9nmo:A (2.4) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032980 9nmo:A (2.4) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032981 9nmo:A (2.4) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032982 9nmo:B (2.4) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032983 9nmo:B (2.4) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032984 9nmo:B (2.4) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032985 9nmo:B (2.4) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032986 9nmo:B (2.4) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032987 9nmo:C (2.4) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032988 9nmo:C (2.4) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032989 9nmo:C (2.4) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032990 9nmo:C (2.4) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032991 9nmo:C (2.4) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032992 9nmo:D (2.4) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032993 9nmo:D (2.4) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032994 9nmo:D (2.4) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032995 9nmo:D (2.4) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983
    1032996 9nmo:D (2.4) BS05 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1032997 9nmp:A (3.09) BS01 ZN N/A GO:0001666 ... E9PZQ0 41392983
    1032998 9nmp:A (3.09) BS02 CFF N/A GO:0001666 ... E9PZQ0 41392983
    1032999 9nmp:A (3.09) BS03 ATP N/A GO:0001666 ... E9PZQ0 41392983
    1033000 9nmp:A (3.09) BS04 CA N/A GO:0001666 ... E9PZQ0 41392983

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).