SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1039401 9oon:B (1.88) BS01 A1IF9 N/A GO:0005737 ... P05637 40789943
    1039402 9oon:B (1.88) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039403 9oon:B (1.88) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039404 9oon:B (1.88) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039405 9ooq:A (3.2) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039406 9ooq:B (3.2) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039407 9ooq:B (3.2) BS02 A1CE1 N/A GO:0005216 ... Q13224 41162707
    1039408 9ooq:C (3.2) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039409 9ooq:D (3.2) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039410 9ooq:D (3.2) BS02 A1CE1 N/A GO:0005216 ... Q13224 41162707
    1039411 9oor:A (3.15) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039412 9oor:B (3.15) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039413 9oor:B (3.15) BS02 A1CE1 N/A GO:0005216 ... Q13224 41162707
    1039414 9oor:C (3.15) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039415 9oor:D (3.15) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039416 9oor:D (3.15) BS02 A1CE1 N/A GO:0005216 ... Q13224 41162707
    1039417 9oos:A (3.03) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039418 9oos:B (3.03) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039419 9oos:B (3.03) BS02 A8W N/A GO:0005216 ... Q13224 41162707
    1039420 9oos:B (3.03) BS03 A8W N/A GO:0005216 ... Q13224 41162707
    1039421 9oos:C (3.03) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039422 9oos:D (3.03) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039423 9oos:D (3.03) BS02 A8W N/A GO:0005216 ... Q13224 41162707
    1039424 9oos:D (3.03) BS03 A8W N/A GO:0005216 ... Q13224 41162707
    1039425 9oot:A (3.13) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039426 9oot:B (3.13) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039427 9oot:B (3.13) BS02 A8W N/A GO:0005216 ... Q13224 41162707
    1039428 9oot:B (3.13) BS03 A8W N/A GO:0005216 ... Q13224 41162707
    1039429 9oot:C (3.13) BS01 GLY N/A GO:0005216 ... Q05586 41162707
    1039430 9oot:D (3.13) BS01 GLU N/A GO:0005216 ... Q13224 41162707
    1039431 9oot:D (3.13) BS02 A8W N/A GO:0005216 ... Q13224 41162707
    1039432 9oot:D (3.13) BS03 A8W N/A GO:0005216 ... Q13224 41162707
    1039433 9oou:A (3.34) BS01 A1AFT N/A GO:0005216 ... P35439 41162707
    1039434 9oou:B (3.34) BS01 A1AFT N/A GO:0005216 ... Q00960 41162707
    1039435 9oou:B (3.34) BS02 CLR N/A GO:0005216 ... Q00960 41162707
    1039436 9oou:C (3.34) BS01 A1AFT N/A GO:0005216 ... P35439 41162707
    1039437 9oou:D (3.34) BS01 A1AFT N/A GO:0005216 ... Q00960 41162707
    1039438 9oou:D (3.34) BS02 CLR N/A GO:0005216 ... Q00960 41162707
    1039439 9ooy:A (1.88) BS01 A1IF9 N/A GO:0005737 ... P05637 40789943
    1039440 9ooy:A (1.88) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039441 9ooy:A (1.88) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039442 9ooy:A (1.88) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039443 9ooy:B (1.88) BS01 A1IF9 N/A GO:0005737 ... P05637 40789943
    1039444 9ooy:B (1.88) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039445 9ooy:B (1.88) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039446 9ooy:B (1.88) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039447 9ooz:A (1.98) BS01 PQQ N/A N/A A0A1P8QVR7 41055952
    1039448 9op2:A (1.5) BS01 A1IF9 N/A GO:0005737 ... P05637 40789943
    1039449 9op2:A (1.5) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039450 9op2:A (1.5) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039451 9op2:A (1.5) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039452 9op2:B (1.5) BS01 A1IF9 N/A GO:0005737 ... P05637 40789943
    1039453 9op2:B (1.5) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039454 9op2:B (1.5) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039455 9op2:B (1.5) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039456 9op3:A (2.59) BS01 rna N/A GO:0003723 ... P78563 41131871
    1039457 9op3:A (2.59) BS02 rna N/A GO:0003723 ... P78563 41131871
    1039458 9op3:A (2.59) BS03 IHP N/A GO:0003723 ... P78563 41131871
    1039459 9op3:A (2.59) BS04 ZN N/A GO:0003723 ... P78563 41131871
    1039460 9op3:B (2.59) BS01 rna N/A GO:0003723 ... P78563 41131871
    1039461 9op3:B (2.59) BS02 rna N/A GO:0003723 ... P78563 41131871
    1039462 9op3:B (2.59) BS03 IHP N/A GO:0003723 ... P78563 41131871
    1039463 9op3:B (2.59) BS04 ZN N/A GO:0003723 ... P78563 41131871
    1039464 9op4:a (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039465 9op4:a (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039466 9op4:b (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039467 9op4:b (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039468 9op4:c (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039469 9op4:c (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039470 9op4:d (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039471 9op4:d (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039472 9op4:e (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039473 9op4:e (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039474 9op4:f (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039475 9op4:f (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039476 9op4:g (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039477 9op4:g (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039478 9op4:h (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039479 9op4:i (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039480 9op4:i (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039481 9op4:j (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039482 9op4:j (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039483 9op4:k (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039484 9op4:l (3.6) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039485 9op4:l (3.6) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039486 9op5:a (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039487 9op5:a (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039488 9op5:b (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039489 9op5:b (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039490 9op5:c (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039491 9op5:c (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039492 9op5:d (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039493 9op5:d (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039494 9op5:e (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039495 9op5:e (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039496 9op5:f (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039497 9op5:g (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039498 9op5:g (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039499 9op5:h (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039500 9op5:h (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039501 9op5:i (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039502 9op5:i (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039503 9op5:j (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039504 9op5:j (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039505 9op5:k (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039506 9op5:k (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039507 9op5:l (3.5) BS01 peptide N/A GO:0042025 ... P10190 40607812
    1039508 9op5:l (3.5) BS02 peptide N/A GO:0042025 ... P10190 40607812
    1039509 9opg:A (1.74) BS01 A1L89 N/A GO:0005737 ... P05637 40789943
    1039510 9opg:A (1.74) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039511 9opg:A (1.74) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039512 9opg:A (1.74) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039513 9opg:B (1.74) BS01 A1L89 N/A GO:0005737 ... P05637 40789943
    1039514 9opg:B (1.74) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039515 9opg:B (1.74) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039516 9opg:B (1.74) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039517 9oph:A (1.66) BS01 rna N/A GO:0005737 ... P05637 40789943
    1039518 9oph:A (1.66) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039519 9oph:A (1.66) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039520 9oph:A (1.66) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039521 9oph:B (1.66) BS01 rna N/A GO:0005737 ... P05637 40789943
    1039522 9oph:B (1.66) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039523 9oph:B (1.66) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039524 9oph:B (1.66) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039525 9opm:A (2.13) BS01 V2M N/A N/A P0DTD1 41544157
    1039526 9opm:B (2.13) BS01 V2M N/A N/A P0DTD1 41544157
    1039527 9opn:A (1.77) BS01 V2M N/A N/A P0DTD1 41544157
    1039528 9opn:B (1.77) BS01 V2M N/A N/A P0DTD1 41544157
    1039529 9opz:A (3.16) BS01 RRY N/A GO:0004930 ... Q8TE23 40754567
    1039530 9opz:A (3.16) BS02 RRJ N/A GO:0004930 ... Q8TE23 40754567
    1039531 9oq1:A (2.98) BS01 RRY N/A N/A Q8TE23 40754567
    1039532 9oq1:A (2.98) BS02 RRJ N/A N/A Q8TE23 40754567
    1039533 9oq2:A (3.27) BS01 A1CD7 N/A GO:0001582 ... Q8TE23 40754567
    1039534 9oq3:A (3.11) BS01 A1CD7 N/A GO:0001582 ... Q8TE23 40754567
    1039535 9oq4:A (3.59) BS01 A1CD7 N/A GO:0001582 ... Q8TE23 40754567
    1039536 9oq5:A (3.93) BS01 A1CD7 N/A GO:0001582 ... Q8TE23 40754567
    1039537 9oq6:A (3.57) BS01 A1CD7 N/A GO:0001582 ... Q8TE23 40754567
    1039538 9oq8:A (2.38) BS01 IMD N/A N/A A0A923FS92 40644315
    1039539 9oq8:B (2.38) BS01 IMD N/A N/A A0A923FS92 40644315
    1039540 9oq8:C (2.38) BS01 IMD N/A N/A A0A923FS92 40644315
    1039541 9oq8:D (2.38) BS01 IMD N/A N/A A0A923FS92 40644315
    1039542 9oq8:E (2.38) BS01 IMD N/A N/A A0A923FS92 40644315
    1039543 9oq9:A (1.96) BS01 B4P N/A GO:0005737 ... P05637 40789943
    1039544 9oq9:A (1.96) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039545 9oq9:A (1.96) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039546 9oq9:A (1.96) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039547 9oq9:B (1.96) BS01 B4P N/A GO:0005737 ... P05637 40789943
    1039548 9oq9:B (1.96) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039549 9oq9:B (1.96) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039550 9oq9:B (1.96) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039551 9oqa:A (3.87) BS01 ZN N/A GO:0004177 ... Q9I6G3 40716734
    1039552 9oqa:A (3.87) BS02 ZN N/A GO:0004177 ... Q9I6G3 40716734
    1039553 9oqa:A (3.87) BS03 ARG N/A GO:0004177 ... Q9I6G3 40716734
    1039554 9oqb:A (2.04) BS01 rna N/A GO:0005737 ... P05637 40789943
    1039555 9oqb:A (2.04) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039556 9oqb:A (2.04) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039557 9oqb:A (2.04) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039558 9oqb:B (2.04) BS01 rna N/A GO:0005737 ... P05637 40789943
    1039559 9oqb:B (2.04) BS02 MN N/A GO:0005737 ... P05637 40789943
    1039560 9oqb:B (2.04) BS03 MG N/A GO:0005737 ... P05637 40789943
    1039561 9oqb:B (2.04) BS04 MN N/A GO:0005737 ... P05637 40789943
    1039562 9oqp:A (2.62) BS01 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039563 9oqp:A (2.62) BS02 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039564 9oqp:B (2.62) BS01 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039565 9oqp:B (2.62) BS02 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039566 9oqp:C (2.62) BS01 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039567 9oqp:C (2.62) BS02 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039568 9oqp:D (2.62) BS01 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039569 9oqp:D (2.62) BS02 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039570 9oqp:E (2.62) BS01 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039571 9oqp:E (2.62) BS02 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039572 9oqp:F (2.62) BS01 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039573 9oqp:F (2.62) BS02 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039574 9oqp:G (2.62) BS01 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039575 9oqp:G (2.62) BS02 A1A1V N/A GO:0002020 ... A0A5P9VSM8
    Q96RD7
    41381453
    1039576 9oqs:A (1.4) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039577 9oqt:A (1.82) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039578 9oqt:A (1.82) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039579 9oqt:B (1.82) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039580 9oqt:B (1.82) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039581 9oqu:A (1.73) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039582 9oqu:B (1.73) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039583 9oqu:B (1.73) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039584 9oqv:A (1.88) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039585 9oqw:A (2.0) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039586 9oqw:A (2.0) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039587 9oqw:B (2.0) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039588 9oqw:B (2.0) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039589 9oqx:A (1.68) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039590 9oqx:A (1.68) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039591 9oqx:B (1.68) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039592 9oqx:B (1.68) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039593 9oqz:A (2.13) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039594 9or0:A (1.75) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039595 9or0:A (1.75) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039596 9or0:B (1.75) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039597 9or0:B (1.75) BS02 HEM N/A N/A A0ABT0G6E0 41101755
    1039598 9or1:A (1.5) BS01 HEM N/A N/A A0ABT0G6E0 41101755
    1039599 9or2:AA1 (2.07) BS01 RET N/A N/A N/A 41229115
    1039600 9or3:A (1.6) BS01 NXL N/A GO:0005576 ... A0A649V088 40720654

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).