SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1041201 9p76:Li (2.83) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1041202 9p76:Lj (2.83) BS01 rna N/A N/A P61927 41315256
    1041203 9p76:Lj (2.83) BS02 rna N/A N/A P61927 41315256
    1041204 9p76:Lj (2.83) BS03 ZN N/A N/A P61927 41315256
    1041205 9p76:Lk (2.83) BS01 rna N/A GO:0002181 ... P63173 41315256
    1041206 9p76:Ll (2.83) BS01 rna N/A GO:0002181 ... P62891 41315256
    1041207 9p76:Ll (2.83) BS02 rna N/A GO:0002181 ... P62891 41315256
    1041208 9p76:Lm (2.83) BS01 rna N/A N/A P62987 41315256
    1041209 9p76:Lm (2.83) BS02 ZN N/A N/A P62987 41315256
    1041210 9p76:Lo (2.83) BS01 rna N/A GO:0002181 ... P83881 41315256
    1041211 9p76:Lo (2.83) BS02 rna N/A GO:0002181 ... P83881 41315256
    1041212 9p76:Lo (2.83) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1041213 9p76:Lp (2.83) BS01 rna N/A GO:0002181 ... P61513 41315256
    1041214 9p76:Lp (2.83) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1041215 9p76:Lr (2.83) BS01 rna N/A GO:0002181 ... P46779 41315256
    1041216 9p76:Ls (2.83) BS01 rna N/A N/A P05388 41315256
    1041217 9p76:Lt (2.83) BS01 rna N/A GO:0002181 ... P30050 41315256
    1041218 9p76:SA (2.83) BS01 rna N/A N/A P08865 41315256
    1041219 9p76:SB (2.83) BS01 rna N/A N/A P61247 41315256
    1041220 9p76:SB (2.83) BS02 rna N/A N/A P61247 41315256
    1041221 9p76:SC (2.83) BS01 rna N/A N/A P15880 41315256
    1041222 9p76:SD (2.83) BS01 rna N/A GO:0001228 ... P23396 41315256
    1041223 9p76:SE (2.83) BS01 rna N/A GO:0002181 ... P62701 41315256
    1041224 9p76:SF (2.83) BS01 rna N/A GO:0002181 ... P46782 41315256
    1041225 9p76:SG (2.83) BS01 rna N/A GO:0002181 ... P62753 41315256
    1041226 9p76:SH (2.83) BS01 rna N/A GO:0002181 ... P62081 41315256
    1041227 9p76:SI (2.83) BS01 rna N/A GO:0002181 ... P62241 41315256
    1041228 9p76:SI (2.83) BS02 rna N/A GO:0002181 ... P62241 41315256
    1041229 9p76:SJ (2.83) BS01 rna N/A GO:0002181 ... P46781 41315256
    1041230 9p76:SK (2.83) BS01 rna N/A N/A P46783 41315256
    1041231 9p76:SL (2.83) BS01 rna N/A GO:0002181 ... P62280 41315256
    1041232 9p76:SL (2.83) BS02 rna N/A GO:0002181 ... P62280 41315256
    1041233 9p76:SM (2.83) BS01 rna N/A GO:0002181 ... P25398 41315256
    1041234 9p76:SN (2.83) BS01 rna N/A GO:0000462 ... P62277 41315256
    1041235 9p76:SO (2.83) BS01 rna N/A GO:0000028 ... P62263 41315256
    1041236 9p76:SP (2.83) BS01 rna N/A N/A P62841 41315256
    1041237 9p76:SQ (2.83) BS01 rna N/A GO:0000462 ... P62249 41315256
    1041238 9p76:SR (2.83) BS01 rna N/A GO:0002181 ... P08708 41315256
    1041239 9p76:SS (2.83) BS01 rna N/A GO:0002181 ... P62269 41315256
    1041240 9p76:ST (2.83) BS01 rna N/A GO:0000028 ... P39019 41315256
    1041241 9p76:SU (2.83) BS01 rna N/A N/A P60866 41315256
    1041242 9p76:SW (2.83) BS01 rna N/A GO:0002181 ... P62244 41315256
    1041243 9p76:SX (2.83) BS01 rna N/A GO:0002181 ... P62266 41315256
    1041244 9p76:SY (2.83) BS01 rna N/A GO:0002181 ... P62847 41315256
    1041245 9p76:SZ (2.83) BS01 rna N/A N/A P62851 41315256
    1041246 9p76:Sa (2.83) BS01 rna N/A N/A P62854 41315256
    1041247 9p76:Sa (2.83) BS02 ZN N/A N/A P62854 41315256
    1041248 9p76:Sb (2.83) BS01 rna N/A GO:0002181 ... P42677 41315256
    1041249 9p76:Sc (2.83) BS01 rna N/A GO:0000028 ... P62857 41315256
    1041250 9p76:Sd (2.83) BS01 rna N/A GO:0002181 ... P62273 41315256
    1041251 9p76:Se (2.83) BS01 rna N/A N/A P62861 41315256
    1041252 9p76:Sf (2.83) BS01 rna N/A N/A P62979 41315256
    1041253 9p76:Sg (2.83) BS01 rna N/A GO:0001891 ... P63244 41315256
    1041254 9p78:CA (2.9) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1041255 9p78:CB (2.9) BS01 rna N/A GO:0002039 ... P13639 41315256
    1041256 9p78:CB (2.9) BS02 rna N/A GO:0002039 ... P13639 41315256
    1041257 9p78:CD (2.9) BS01 rna N/A GO:0003723 ... Q8NC51 41315256
    1041258 9p78:CI (2.9) BS01 rna N/A N/A P20290 41315256
    1041259 9p78:LA (2.9) BS01 rna N/A GO:0002181 ... P62917 41315256
    1041260 9p78:LA (2.9) BS02 rna N/A GO:0002181 ... P62917 41315256
    1041261 9p78:LA (2.9) BS03 MG N/A GO:0002181 ... P62917 41315256
    1041262 9p78:LB (2.9) BS01 rna N/A GO:0002181 ... P39023 41315256
    1041263 9p78:LC (2.9) BS01 rna N/A N/A P36578 41315256
    1041264 9p78:LC (2.9) BS02 rna N/A N/A P36578 41315256
    1041265 9p78:LC (2.9) BS03 SPD N/A N/A P36578 41315256
    1041266 9p78:LD (2.9) BS01 rna N/A GO:0000027 ... P46777 41315256
    1041267 9p78:LD (2.9) BS02 rna N/A GO:0000027 ... P46777 41315256
    1041268 9p78:LE (2.9) BS01 rna N/A N/A Q02878 41315256
    1041269 9p78:LF (2.9) BS01 rna N/A GO:0000463 ... P18124 41315256
    1041270 9p78:LF (2.9) BS02 rna N/A GO:0000463 ... P18124 41315256
    1041271 9p78:LG (2.9) BS01 rna N/A GO:0000470 ... P62424 41315256
    1041272 9p78:LG (2.9) BS02 rna N/A GO:0000470 ... P62424 41315256
    1041273 9p78:LH (2.9) BS01 rna N/A GO:0002181 ... P32969 41315256
    1041274 9p78:LI (2.9) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1041275 9p78:LI (2.9) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1041276 9p78:LJ (2.9) BS01 rna N/A GO:0000027 ... P62913 41315256
    1041277 9p78:LJ (2.9) BS02 rna N/A GO:0000027 ... P62913 41315256
    1041278 9p78:LL (2.9) BS01 rna N/A GO:0002181 ... P26373 41315256
    1041279 9p78:LL (2.9) BS02 rna N/A GO:0002181 ... P26373 41315256
    1041280 9p78:LM (2.9) BS01 rna N/A N/A P50914 41315256
    1041281 9p78:LN (2.9) BS01 rna N/A GO:0002181 ... P61313 41315256
    1041282 9p78:LN (2.9) BS02 rna N/A GO:0002181 ... P61313 41315256
    1041283 9p78:LN (2.9) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1041284 9p78:LO (2.9) BS01 rna N/A GO:0002181 ... P40429 41315256
    1041285 9p78:LP (2.9) BS01 rna N/A N/A P18621 41315256
    1041286 9p78:LP (2.9) BS02 rna N/A N/A P18621 41315256
    1041287 9p78:LQ (2.9) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1041288 9p78:LR (2.9) BS01 rna N/A GO:0002181 ... P84098 41315256
    1041289 9p78:LR (2.9) BS02 rna N/A GO:0002181 ... P84098 41315256
    1041290 9p78:LS (2.9) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1041291 9p78:LS (2.9) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1041292 9p78:LT (2.9) BS01 rna N/A GO:0001650 ... P46778 41315256
    1041293 9p78:LT (2.9) BS02 rna N/A GO:0001650 ... P46778 41315256
    1041294 9p78:LU (2.9) BS01 rna N/A N/A Q7Z4W8 41315256
    1041295 9p78:LV (2.9) BS01 rna N/A GO:0000122 ... P62829 41315256
    1041296 9p78:LV (2.9) BS02 rna N/A GO:0000122 ... P62829 41315256
    1041297 9p78:LW (2.9) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041298 9p78:LW (2.9) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041299 9p78:LX (2.9) BS01 rna N/A N/A P62750 41315256
    1041300 9p78:LX (2.9) BS02 rna N/A N/A P62750 41315256
    1041301 9p78:LY (2.9) BS01 rna N/A GO:0002181 ... P61254 41315256
    1041302 9p78:LY (2.9) BS02 rna N/A GO:0002181 ... P61254 41315256
    1041303 9p78:LZ (2.9) BS01 rna N/A GO:0002181 ... P61353 41315256
    1041304 9p78:La (2.9) BS01 rna N/A GO:0002181 ... P46776 41315256
    1041305 9p78:Lb (2.9) BS01 rna N/A N/A P47914 41315256
    1041306 9p78:Lc (2.9) BS01 rna N/A N/A P62888 41315256
    1041307 9p78:Ld (2.9) BS01 rna N/A N/A P62899 41315256
    1041308 9p78:Le (2.9) BS01 rna N/A GO:0002181 ... P62910 41315256
    1041309 9p78:Le (2.9) BS02 MG N/A GO:0002181 ... P62910 41315256
    1041310 9p78:Lf (2.9) BS01 rna N/A GO:0002181 ... P18077 41315256
    1041311 9p78:Lg (2.9) BS01 rna N/A GO:0002181 ... P49207 41315256
    1041312 9p78:Lg (2.9) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1041313 9p78:Lh (2.9) BS01 rna N/A GO:0000463 ... P42766 41315256
    1041314 9p78:Lh (2.9) BS02 rna N/A GO:0000463 ... P42766 41315256
    1041315 9p78:Li (2.9) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1041316 9p78:Lj (2.9) BS01 rna N/A N/A P61927 41315256
    1041317 9p78:Lj (2.9) BS02 rna N/A N/A P61927 41315256
    1041318 9p78:Lj (2.9) BS03 ZN N/A N/A P61927 41315256
    1041319 9p78:Lk (2.9) BS01 rna N/A GO:0002181 ... P63173 41315256
    1041320 9p78:Ll (2.9) BS01 rna N/A GO:0002181 ... P62891 41315256
    1041321 9p78:Ll (2.9) BS02 rna N/A GO:0002181 ... P62891 41315256
    1041322 9p78:Lm (2.9) BS01 rna N/A N/A P62987 41315256
    1041323 9p78:Lm (2.9) BS02 ZN N/A N/A P62987 41315256
    1041324 9p78:Lo (2.9) BS01 rna N/A GO:0002181 ... P83881 41315256
    1041325 9p78:Lo (2.9) BS02 rna N/A GO:0002181 ... P83881 41315256
    1041326 9p78:Lo (2.9) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1041327 9p78:Lp (2.9) BS01 rna N/A GO:0002181 ... P61513 41315256
    1041328 9p78:Lp (2.9) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1041329 9p78:Lr (2.9) BS01 rna N/A GO:0002181 ... P46779 41315256
    1041330 9p78:Ls (2.9) BS01 rna N/A N/A P05388 41315256
    1041331 9p78:Lt (2.9) BS01 rna N/A GO:0002181 ... P30050 41315256
    1041332 9p78:SA (2.9) BS01 rna N/A N/A P08865 41315256
    1041333 9p78:SB (2.9) BS01 rna N/A N/A P61247 41315256
    1041334 9p78:SC (2.9) BS01 rna N/A N/A P15880 41315256
    1041335 9p78:SD (2.9) BS01 rna N/A GO:0001228 ... P23396 41315256
    1041336 9p78:SE (2.9) BS01 rna N/A GO:0002181 ... P62701 41315256
    1041337 9p78:SF (2.9) BS01 rna N/A GO:0002181 ... P46782 41315256
    1041338 9p78:SG (2.9) BS01 rna N/A GO:0002181 ... P62753 41315256
    1041339 9p78:SH (2.9) BS01 rna N/A GO:0002181 ... P62081 41315256
    1041340 9p78:SI (2.9) BS01 rna N/A GO:0002181 ... P62241 41315256
    1041341 9p78:SI (2.9) BS02 rna N/A GO:0002181 ... P62241 41315256
    1041342 9p78:SJ (2.9) BS01 rna N/A GO:0002181 ... P46781 41315256
    1041343 9p78:SK (2.9) BS01 rna N/A N/A P46783 41315256
    1041344 9p78:SL (2.9) BS01 rna N/A GO:0002181 ... P62280 41315256
    1041345 9p78:SM (2.9) BS01 rna N/A GO:0002181 ... P25398 41315256
    1041346 9p78:SN (2.9) BS01 rna N/A GO:0000462 ... P62277 41315256
    1041347 9p78:SO (2.9) BS01 rna N/A GO:0000028 ... P62263 41315256
    1041348 9p78:SP (2.9) BS01 rna N/A N/A P62841 41315256
    1041349 9p78:SQ (2.9) BS01 rna N/A GO:0000462 ... P62249 41315256
    1041350 9p78:SR (2.9) BS01 rna N/A GO:0002181 ... P08708 41315256
    1041351 9p78:SS (2.9) BS01 rna N/A GO:0002181 ... P62269 41315256
    1041352 9p78:ST (2.9) BS01 rna N/A GO:0000028 ... P39019 41315256
    1041353 9p78:SU (2.9) BS01 rna N/A N/A P60866 41315256
    1041354 9p78:SW (2.9) BS01 rna N/A GO:0002181 ... P62244 41315256
    1041355 9p78:SX (2.9) BS01 rna N/A GO:0002181 ... P62266 41315256
    1041356 9p78:SY (2.9) BS01 rna N/A GO:0002181 ... P62847 41315256
    1041357 9p78:SZ (2.9) BS01 rna N/A N/A P62851 41315256
    1041358 9p78:Sa (2.9) BS01 rna N/A N/A P62854 41315256
    1041359 9p78:Sa (2.9) BS02 ZN N/A N/A P62854 41315256
    1041360 9p78:Sb (2.9) BS01 rna N/A GO:0002181 ... P42677 41315256
    1041361 9p78:Sc (2.9) BS01 rna N/A GO:0000028 ... P62857 41315256
    1041362 9p78:Sd (2.9) BS01 rna N/A GO:0002181 ... P62273 41315256
    1041363 9p78:Se (2.9) BS01 rna N/A N/A P62861 41315256
    1041364 9p78:Sf (2.9) BS01 rna N/A N/A P62979 41315256
    1041365 9p78:Sg (2.9) BS01 rna N/A GO:0001891 ... P63244 41315256
    1041366 9p79:CA (3.1) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1041367 9p79:CB (3.1) BS01 rna N/A GO:0002039 ... P13639 41315256
    1041368 9p79:CB (3.1) BS02 rna N/A GO:0002039 ... P13639 41315256
    1041369 9p79:CD (3.1) BS01 rna N/A GO:0003723 ... Q8NC51 41315256
    1041370 9p79:CI (3.1) BS01 rna N/A N/A P20290 41315256
    1041371 9p79:LA (3.1) BS01 rna N/A GO:0002181 ... P62917 41315256
    1041372 9p79:LA (3.1) BS02 rna N/A GO:0002181 ... P62917 41315256
    1041373 9p79:LA (3.1) BS03 MG N/A GO:0002181 ... P62917 41315256
    1041374 9p79:LB (3.1) BS01 rna N/A GO:0002181 ... P39023 41315256
    1041375 9p79:LC (3.1) BS01 rna N/A N/A P36578 41315256
    1041376 9p79:LC (3.1) BS02 rna N/A N/A P36578 41315256
    1041377 9p79:LC (3.1) BS03 SPD N/A N/A P36578 41315256
    1041378 9p79:LD (3.1) BS01 rna N/A GO:0000027 ... P46777 41315256
    1041379 9p79:LD (3.1) BS02 rna N/A GO:0000027 ... P46777 41315256
    1041380 9p79:LE (3.1) BS01 rna N/A N/A Q02878 41315256
    1041381 9p79:LF (3.1) BS01 rna N/A GO:0000463 ... P18124 41315256
    1041382 9p79:LF (3.1) BS02 rna N/A GO:0000463 ... P18124 41315256
    1041383 9p79:LG (3.1) BS01 rna N/A GO:0000470 ... P62424 41315256
    1041384 9p79:LG (3.1) BS02 rna N/A GO:0000470 ... P62424 41315256
    1041385 9p79:LH (3.1) BS01 rna N/A GO:0002181 ... P32969 41315256
    1041386 9p79:LI (3.1) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1041387 9p79:LI (3.1) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1041388 9p79:LJ (3.1) BS01 rna N/A GO:0000027 ... P62913 41315256
    1041389 9p79:LJ (3.1) BS02 rna N/A GO:0000027 ... P62913 41315256
    1041390 9p79:LL (3.1) BS01 rna N/A GO:0002181 ... P26373 41315256
    1041391 9p79:LL (3.1) BS02 rna N/A GO:0002181 ... P26373 41315256
    1041392 9p79:LM (3.1) BS01 rna N/A N/A P50914 41315256
    1041393 9p79:LN (3.1) BS01 rna N/A GO:0002181 ... P61313 41315256
    1041394 9p79:LN (3.1) BS02 rna N/A GO:0002181 ... P61313 41315256
    1041395 9p79:LN (3.1) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1041396 9p79:LO (3.1) BS01 rna N/A GO:0002181 ... P40429 41315256
    1041397 9p79:LP (3.1) BS01 rna N/A N/A P18621 41315256
    1041398 9p79:LP (3.1) BS02 rna N/A N/A P18621 41315256
    1041399 9p79:LQ (3.1) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1041400 9p79:LR (3.1) BS01 rna N/A GO:0002181 ... P84098 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).