SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1041401 9p79:LR (3.1) BS02 rna N/A GO:0002181 ... P84098 41315256
    1041402 9p79:LS (3.1) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1041403 9p79:LS (3.1) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1041404 9p79:LT (3.1) BS01 rna N/A GO:0001650 ... P46778 41315256
    1041405 9p79:LT (3.1) BS02 rna N/A GO:0001650 ... P46778 41315256
    1041406 9p79:LU (3.1) BS01 rna N/A N/A Q7Z4W8 41315256
    1041407 9p79:LV (3.1) BS01 rna N/A GO:0000122 ... P62829 41315256
    1041408 9p79:LW (3.1) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041409 9p79:LW (3.1) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041410 9p79:LX (3.1) BS01 rna N/A N/A P62750 41315256
    1041411 9p79:LX (3.1) BS02 rna N/A N/A P62750 41315256
    1041412 9p79:LY (3.1) BS01 rna N/A GO:0002181 ... P61254 41315256
    1041413 9p79:LY (3.1) BS02 rna N/A GO:0002181 ... P61254 41315256
    1041414 9p79:LZ (3.1) BS01 rna N/A GO:0002181 ... P61353 41315256
    1041415 9p79:La (3.1) BS01 rna N/A GO:0002181 ... P46776 41315256
    1041416 9p79:Lb (3.1) BS01 rna N/A N/A P47914 41315256
    1041417 9p79:Lc (3.1) BS01 rna N/A N/A P62888 41315256
    1041418 9p79:Ld (3.1) BS01 rna N/A N/A P62899 41315256
    1041419 9p79:Le (3.1) BS01 rna N/A GO:0002181 ... P62910 41315256
    1041420 9p79:Lf (3.1) BS01 rna N/A GO:0002181 ... P18077 41315256
    1041421 9p79:Lg (3.1) BS01 rna N/A GO:0002181 ... P49207 41315256
    1041422 9p79:Lg (3.1) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1041423 9p79:Lh (3.1) BS01 rna N/A GO:0000463 ... P42766 41315256
    1041424 9p79:Lh (3.1) BS02 rna N/A GO:0000463 ... P42766 41315256
    1041425 9p79:Li (3.1) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1041426 9p79:Lj (3.1) BS01 rna N/A N/A P61927 41315256
    1041427 9p79:Lj (3.1) BS02 rna N/A N/A P61927 41315256
    1041428 9p79:Lj (3.1) BS03 ZN N/A N/A P61927 41315256
    1041429 9p79:Lk (3.1) BS01 rna N/A GO:0002181 ... P63173 41315256
    1041430 9p79:Ll (3.1) BS01 rna N/A GO:0002181 ... P62891 41315256
    1041431 9p79:Ll (3.1) BS02 rna N/A GO:0002181 ... P62891 41315256
    1041432 9p79:Lm (3.1) BS01 rna N/A N/A P62987 41315256
    1041433 9p79:Lm (3.1) BS02 ZN N/A N/A P62987 41315256
    1041434 9p79:Lo (3.1) BS01 rna N/A GO:0002181 ... P83881 41315256
    1041435 9p79:Lo (3.1) BS02 ZN N/A GO:0002181 ... P83881 41315256
    1041436 9p79:Lp (3.1) BS01 rna N/A GO:0002181 ... P61513 41315256
    1041437 9p79:Lp (3.1) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1041438 9p79:Lr (3.1) BS01 rna N/A GO:0002181 ... P46779 41315256
    1041439 9p79:Ls (3.1) BS01 rna N/A N/A P05388 41315256
    1041440 9p79:Lt (3.1) BS01 rna N/A GO:0002181 ... P30050 41315256
    1041441 9p79:SA (3.1) BS01 rna N/A N/A P08865 41315256
    1041442 9p79:SB (3.1) BS01 rna N/A N/A P61247 41315256
    1041443 9p79:SC (3.1) BS01 rna N/A N/A P15880 41315256
    1041444 9p79:SD (3.1) BS01 rna N/A GO:0001228 ... P23396 41315256
    1041445 9p79:SE (3.1) BS01 rna N/A GO:0002181 ... P62701 41315256
    1041446 9p79:SF (3.1) BS01 rna N/A GO:0002181 ... P46782 41315256
    1041447 9p79:SG (3.1) BS01 rna N/A GO:0002181 ... P62753 41315256
    1041448 9p79:SH (3.1) BS01 rna N/A GO:0002181 ... P62081 41315256
    1041449 9p79:SI (3.1) BS01 rna N/A GO:0002181 ... P62241 41315256
    1041450 9p79:SI (3.1) BS02 rna N/A GO:0002181 ... P62241 41315256
    1041451 9p79:SJ (3.1) BS01 rna N/A GO:0002181 ... P46781 41315256
    1041452 9p79:SK (3.1) BS01 rna N/A N/A P46783 41315256
    1041453 9p79:SL (3.1) BS01 rna N/A GO:0002181 ... P62280 41315256
    1041454 9p79:SM (3.1) BS01 rna N/A GO:0002181 ... P25398 41315256
    1041455 9p79:SN (3.1) BS01 rna N/A GO:0000462 ... P62277 41315256
    1041456 9p79:SO (3.1) BS01 rna N/A GO:0000028 ... P62263 41315256
    1041457 9p79:SP (3.1) BS01 rna N/A N/A P62841 41315256
    1041458 9p79:SQ (3.1) BS01 rna N/A GO:0000462 ... P62249 41315256
    1041459 9p79:SR (3.1) BS01 rna N/A GO:0002181 ... P08708 41315256
    1041460 9p79:SS (3.1) BS01 rna N/A GO:0002181 ... P62269 41315256
    1041461 9p79:ST (3.1) BS01 rna N/A GO:0000028 ... P39019 41315256
    1041462 9p79:SU (3.1) BS01 rna N/A N/A P60866 41315256
    1041463 9p79:SW (3.1) BS01 rna N/A GO:0002181 ... P62244 41315256
    1041464 9p79:SX (3.1) BS01 rna N/A GO:0002181 ... P62266 41315256
    1041465 9p79:SY (3.1) BS01 rna N/A GO:0002181 ... P62847 41315256
    1041466 9p79:SZ (3.1) BS01 rna N/A N/A P62851 41315256
    1041467 9p79:SZ (3.1) BS02 rna N/A N/A P62851 41315256
    1041468 9p79:Sa (3.1) BS01 rna N/A N/A P62854 41315256
    1041469 9p79:Sa (3.1) BS02 ZN N/A N/A P62854 41315256
    1041470 9p79:Sb (3.1) BS01 rna N/A GO:0002181 ... P42677 41315256
    1041471 9p79:Sc (3.1) BS01 rna N/A GO:0000028 ... P62857 41315256
    1041472 9p79:Sd (3.1) BS01 rna N/A GO:0002181 ... P62273 41315256
    1041473 9p79:Se (3.1) BS01 rna N/A N/A P62861 41315256
    1041474 9p79:Sf (3.1) BS01 rna N/A N/A P62979 41315256
    1041475 9p79:Sg (3.1) BS01 rna N/A GO:0001891 ... P63244 41315256
    1041476 9p7a:CA (2.81) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1041477 9p7a:CB (2.81) BS01 rna N/A GO:0002039 ... P13639 41315256
    1041478 9p7a:CB (2.81) BS02 rna N/A GO:0002039 ... P13639 41315256
    1041479 9p7a:CD (2.81) BS01 rna N/A GO:0003723 ... Q8NC51 41315256
    1041480 9p7a:CI (2.81) BS01 rna N/A N/A P20290 41315256
    1041481 9p7a:LA (2.81) BS01 rna N/A GO:0002181 ... P62917 41315256
    1041482 9p7a:LA (2.81) BS02 MG N/A GO:0002181 ... P62917 41315256
    1041483 9p7a:LB (2.81) BS01 rna N/A GO:0002181 ... P39023 41315256
    1041484 9p7a:LC (2.81) BS01 rna N/A N/A P36578 41315256
    1041485 9p7a:LC (2.81) BS02 rna N/A N/A P36578 41315256
    1041486 9p7a:LC (2.81) BS03 SPD N/A N/A P36578 41315256
    1041487 9p7a:LD (2.81) BS01 rna N/A GO:0000027 ... P46777 41315256
    1041488 9p7a:LD (2.81) BS02 rna N/A GO:0000027 ... P46777 41315256
    1041489 9p7a:LE (2.81) BS01 rna N/A N/A Q02878 41315256
    1041490 9p7a:LF (2.81) BS01 rna N/A GO:0000463 ... P18124 41315256
    1041491 9p7a:LF (2.81) BS02 rna N/A GO:0000463 ... P18124 41315256
    1041492 9p7a:LG (2.81) BS01 rna N/A GO:0000470 ... P62424 41315256
    1041493 9p7a:LG (2.81) BS02 rna N/A GO:0000470 ... P62424 41315256
    1041494 9p7a:LH (2.81) BS01 rna N/A GO:0002181 ... P32969 41315256
    1041495 9p7a:LI (2.81) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1041496 9p7a:LI (2.81) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1041497 9p7a:LJ (2.81) BS01 rna N/A GO:0000027 ... P62913 41315256
    1041498 9p7a:LJ (2.81) BS02 rna N/A GO:0000027 ... P62913 41315256
    1041499 9p7a:LL (2.81) BS01 rna N/A GO:0002181 ... P26373 41315256
    1041500 9p7a:LL (2.81) BS02 rna N/A GO:0002181 ... P26373 41315256
    1041501 9p7a:LM (2.81) BS01 rna N/A N/A P50914 41315256
    1041502 9p7a:LN (2.81) BS01 rna N/A GO:0002181 ... P61313 41315256
    1041503 9p7a:LN (2.81) BS02 rna N/A GO:0002181 ... P61313 41315256
    1041504 9p7a:LN (2.81) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1041505 9p7a:LO (2.81) BS01 rna N/A GO:0002181 ... P40429 41315256
    1041506 9p7a:LP (2.81) BS01 rna N/A N/A P18621 41315256
    1041507 9p7a:LP (2.81) BS02 rna N/A N/A P18621 41315256
    1041508 9p7a:LQ (2.81) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1041509 9p7a:LR (2.81) BS01 rna N/A GO:0002181 ... P84098 41315256
    1041510 9p7a:LR (2.81) BS02 rna N/A GO:0002181 ... P84098 41315256
    1041511 9p7a:LS (2.81) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1041512 9p7a:LS (2.81) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1041513 9p7a:LT (2.81) BS01 rna N/A GO:0001650 ... P46778 41315256
    1041514 9p7a:LT (2.81) BS02 rna N/A GO:0001650 ... P46778 41315256
    1041515 9p7a:LU (2.81) BS01 rna N/A N/A Q7Z4W8 41315256
    1041516 9p7a:LV (2.81) BS01 rna N/A GO:0000122 ... P62829 41315256
    1041517 9p7a:LW (2.81) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041518 9p7a:LW (2.81) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041519 9p7a:LX (2.81) BS01 rna N/A N/A P62750 41315256
    1041520 9p7a:LX (2.81) BS02 rna N/A N/A P62750 41315256
    1041521 9p7a:LY (2.81) BS01 rna N/A GO:0002181 ... P61254 41315256
    1041522 9p7a:LY (2.81) BS02 rna N/A GO:0002181 ... P61254 41315256
    1041523 9p7a:LZ (2.81) BS01 rna N/A GO:0002181 ... P61353 41315256
    1041524 9p7a:La (2.81) BS01 rna N/A GO:0002181 ... P46776 41315256
    1041525 9p7a:Lb (2.81) BS01 rna N/A N/A P47914 41315256
    1041526 9p7a:Lc (2.81) BS01 rna N/A N/A P62888 41315256
    1041527 9p7a:Ld (2.81) BS01 rna N/A N/A P62899 41315256
    1041528 9p7a:Le (2.81) BS01 rna N/A GO:0002181 ... P62910 41315256
    1041529 9p7a:Le (2.81) BS02 MG N/A GO:0002181 ... P62910 41315256
    1041530 9p7a:Lf (2.81) BS01 rna N/A GO:0002181 ... P18077 41315256
    1041531 9p7a:Lg (2.81) BS01 rna N/A GO:0002181 ... P49207 41315256
    1041532 9p7a:Lg (2.81) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1041533 9p7a:Lh (2.81) BS01 rna N/A GO:0000463 ... P42766 41315256
    1041534 9p7a:Lh (2.81) BS02 rna N/A GO:0000463 ... P42766 41315256
    1041535 9p7a:Li (2.81) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1041536 9p7a:Lj (2.81) BS01 rna N/A N/A P61927 41315256
    1041537 9p7a:Lj (2.81) BS02 rna N/A N/A P61927 41315256
    1041538 9p7a:Lj (2.81) BS03 ZN N/A N/A P61927 41315256
    1041539 9p7a:Lk (2.81) BS01 rna N/A GO:0002181 ... P63173 41315256
    1041540 9p7a:Ll (2.81) BS01 rna N/A GO:0002181 ... P62891 41315256
    1041541 9p7a:Ll (2.81) BS02 rna N/A GO:0002181 ... P62891 41315256
    1041542 9p7a:Lm (2.81) BS01 rna N/A N/A P62987 41315256
    1041543 9p7a:Lm (2.81) BS02 ZN N/A N/A P62987 41315256
    1041544 9p7a:Lo (2.81) BS01 rna N/A GO:0002181 ... P83881 41315256
    1041545 9p7a:Lo (2.81) BS02 rna N/A GO:0002181 ... P83881 41315256
    1041546 9p7a:Lo (2.81) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1041547 9p7a:Lp (2.81) BS01 rna N/A GO:0002181 ... P61513 41315256
    1041548 9p7a:Lp (2.81) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1041549 9p7a:Lr (2.81) BS01 rna N/A GO:0002181 ... P46779 41315256
    1041550 9p7a:Ls (2.81) BS01 rna N/A N/A P05388 41315256
    1041551 9p7a:Lt (2.81) BS01 rna N/A GO:0002181 ... P30050 41315256
    1041552 9p7a:SA (2.81) BS01 rna N/A N/A P08865 41315256
    1041553 9p7a:SB (2.81) BS01 rna N/A N/A P61247 41315256
    1041554 9p7a:SC (2.81) BS01 rna N/A N/A P15880 41315256
    1041555 9p7a:SD (2.81) BS01 rna N/A GO:0001228 ... P23396 41315256
    1041556 9p7a:SE (2.81) BS01 rna N/A GO:0002181 ... P62701 41315256
    1041557 9p7a:SF (2.81) BS01 rna N/A GO:0002181 ... P46782 41315256
    1041558 9p7a:SG (2.81) BS01 rna N/A GO:0002181 ... P62753 41315256
    1041559 9p7a:SH (2.81) BS01 rna N/A GO:0002181 ... P62081 41315256
    1041560 9p7a:SI (2.81) BS01 rna N/A GO:0002181 ... P62241 41315256
    1041561 9p7a:SI (2.81) BS02 rna N/A GO:0002181 ... P62241 41315256
    1041562 9p7a:SJ (2.81) BS01 rna N/A GO:0002181 ... P46781 41315256
    1041563 9p7a:SK (2.81) BS01 rna N/A N/A P46783 41315256
    1041564 9p7a:SL (2.81) BS01 rna N/A GO:0002181 ... P62280 41315256
    1041565 9p7a:SM (2.81) BS01 rna N/A GO:0002181 ... P25398 41315256
    1041566 9p7a:SN (2.81) BS01 rna N/A GO:0000462 ... P62277 41315256
    1041567 9p7a:SN (2.81) BS02 rna N/A GO:0000462 ... P62277 41315256
    1041568 9p7a:SO (2.81) BS01 rna N/A GO:0000028 ... P62263 41315256
    1041569 9p7a:SP (2.81) BS01 rna N/A N/A P62841 41315256
    1041570 9p7a:SP (2.81) BS02 rna N/A N/A P62841 41315256
    1041571 9p7a:SQ (2.81) BS01 rna N/A GO:0000462 ... P62249 41315256
    1041572 9p7a:SR (2.81) BS01 rna N/A GO:0002181 ... P08708 41315256
    1041573 9p7a:SS (2.81) BS01 rna N/A GO:0002181 ... P62269 41315256
    1041574 9p7a:ST (2.81) BS01 rna N/A GO:0000028 ... P39019 41315256
    1041575 9p7a:SU (2.81) BS01 rna N/A N/A P60866 41315256
    1041576 9p7a:SW (2.81) BS01 rna N/A GO:0002181 ... P62244 41315256
    1041577 9p7a:SX (2.81) BS01 rna N/A GO:0002181 ... P62266 41315256
    1041578 9p7a:SY (2.81) BS01 rna N/A GO:0002181 ... P62847 41315256
    1041579 9p7a:SZ (2.81) BS01 rna N/A N/A P62851 41315256
    1041580 9p7a:Sa (2.81) BS01 rna N/A N/A P62854 41315256
    1041581 9p7a:Sa (2.81) BS02 ZN N/A N/A P62854 41315256
    1041582 9p7a:Sb (2.81) BS01 rna N/A GO:0002181 ... P42677 41315256
    1041583 9p7a:Sc (2.81) BS01 rna N/A GO:0000028 ... P62857 41315256
    1041584 9p7a:Sd (2.81) BS01 rna N/A GO:0002181 ... P62273 41315256
    1041585 9p7a:Se (2.81) BS01 rna N/A N/A P62861 41315256
    1041586 9p7a:Sf (2.81) BS01 rna N/A N/A P62979 41315256
    1041587 9p7a:Sg (2.81) BS01 rna N/A GO:0001891 ... P63244 41315256
    1041588 9p7c:CA (2.78) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1041589 9p7c:CB (2.78) BS01 rna N/A GO:0002039 ... P13639 41315256
    1041590 9p7c:CB (2.78) BS02 rna N/A GO:0002039 ... P13639 41315256
    1041591 9p7c:CD (2.78) BS01 rna N/A GO:0003723 ... Q8NC51 41315256
    1041592 9p7c:CI (2.78) BS01 rna N/A N/A P20290 41315256
    1041593 9p7c:LA (2.78) BS01 rna N/A GO:0002181 ... P62917 41315256
    1041594 9p7c:LA (2.78) BS02 rna N/A GO:0002181 ... P62917 41315256
    1041595 9p7c:LA (2.78) BS03 MG N/A GO:0002181 ... P62917 41315256
    1041596 9p7c:LB (2.78) BS01 rna N/A GO:0002181 ... P39023 41315256
    1041597 9p7c:LC (2.78) BS01 rna N/A N/A P36578 41315256
    1041598 9p7c:LC (2.78) BS02 rna N/A N/A P36578 41315256
    1041599 9p7c:LC (2.78) BS03 SPD N/A N/A P36578 41315256
    1041600 9p7c:LD (2.78) BS01 rna N/A GO:0000027 ... P46777 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).