SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 5200 5201 5202 5203 5204 5205 5206 5207 5208 5209 5210 5211 5212 5213 5214 5215 5216 5217 5218 5219 5220 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1041801 9p7d:SW (2.57) BS01 rna N/A GO:0002181 ... P62244 41315256
    1041802 9p7d:SX (2.57) BS01 rna N/A GO:0002181 ... P62266 41315256
    1041803 9p7d:SY (2.57) BS01 rna N/A GO:0002181 ... P62847 41315256
    1041804 9p7d:SZ (2.57) BS01 rna N/A N/A P62851 41315256
    1041805 9p7d:Sa (2.57) BS01 rna N/A N/A P62854 41315256
    1041806 9p7d:Sa (2.57) BS02 ZN N/A N/A P62854 41315256
    1041807 9p7d:Sb (2.57) BS01 rna N/A GO:0002181 ... P42677 41315256
    1041808 9p7d:Sc (2.57) BS01 rna N/A GO:0000028 ... P62857 41315256
    1041809 9p7d:Sd (2.57) BS01 rna N/A GO:0002181 ... P62273 41315256
    1041810 9p7d:Se (2.57) BS01 rna N/A N/A P62861 41315256
    1041811 9p7d:Sf (2.57) BS01 rna N/A N/A P62979 41315256
    1041812 9p7d:Sg (2.57) BS01 rna N/A GO:0001891 ... P63244 41315256
    1041813 9p7e:CA (2.59) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1041814 9p7e:CB (2.59) BS01 rna N/A GO:0002039 ... P13639 41315256
    1041815 9p7e:CB (2.59) BS02 rna N/A GO:0002039 ... P13639 41315256
    1041816 9p7e:CD (2.59) BS01 rna N/A GO:0003723 ... Q8NC51 41315256
    1041817 9p7e:CI (2.59) BS01 rna N/A GO:0003723 ... P20290 41315256
    1041818 9p7e:LA (2.59) BS01 rna N/A GO:0002181 ... P62917 41315256
    1041819 9p7e:LA (2.59) BS02 rna N/A GO:0002181 ... P62917 41315256
    1041820 9p7e:LA (2.59) BS03 MG N/A GO:0002181 ... P62917 41315256
    1041821 9p7e:LB (2.59) BS01 rna N/A GO:0002181 ... P39023 41315256
    1041822 9p7e:LC (2.59) BS01 rna N/A N/A P36578 41315256
    1041823 9p7e:LC (2.59) BS02 rna N/A N/A P36578 41315256
    1041824 9p7e:LD (2.59) BS01 rna N/A GO:0000027 ... P46777 41315256
    1041825 9p7e:LD (2.59) BS02 rna N/A GO:0000027 ... P46777 41315256
    1041826 9p7e:LE (2.59) BS01 rna N/A N/A Q02878 41315256
    1041827 9p7e:LF (2.59) BS01 rna N/A GO:0000463 ... P18124 41315256
    1041828 9p7e:LF (2.59) BS02 rna N/A GO:0000463 ... P18124 41315256
    1041829 9p7e:LG (2.59) BS01 rna N/A GO:0000470 ... P62424 41315256
    1041830 9p7e:LG (2.59) BS02 rna N/A GO:0000470 ... P62424 41315256
    1041831 9p7e:LH (2.59) BS01 rna N/A GO:0002181 ... P32969 41315256
    1041832 9p7e:LI (2.59) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1041833 9p7e:LI (2.59) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1041834 9p7e:LJ (2.59) BS01 rna N/A GO:0000027 ... P62913 41315256
    1041835 9p7e:LJ (2.59) BS02 rna N/A GO:0000027 ... P62913 41315256
    1041836 9p7e:LL (2.59) BS01 rna N/A GO:0002181 ... P26373 41315256
    1041837 9p7e:LL (2.59) BS02 rna N/A GO:0002181 ... P26373 41315256
    1041838 9p7e:LM (2.59) BS01 rna N/A N/A P50914 41315256
    1041839 9p7e:LN (2.59) BS01 rna N/A GO:0002181 ... P61313 41315256
    1041840 9p7e:LN (2.59) BS02 rna N/A GO:0002181 ... P61313 41315256
    1041841 9p7e:LO (2.59) BS01 rna N/A GO:0002181 ... P40429 41315256
    1041842 9p7e:LP (2.59) BS01 rna N/A N/A P18621 41315256
    1041843 9p7e:LP (2.59) BS02 rna N/A N/A P18621 41315256
    1041844 9p7e:LQ (2.59) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1041845 9p7e:LR (2.59) BS01 rna N/A GO:0002181 ... P84098 41315256
    1041846 9p7e:LR (2.59) BS02 rna N/A GO:0002181 ... P84098 41315256
    1041847 9p7e:LS (2.59) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1041848 9p7e:LS (2.59) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1041849 9p7e:LT (2.59) BS01 rna N/A GO:0001650 ... P46778 41315256
    1041850 9p7e:LT (2.59) BS02 rna N/A GO:0001650 ... P46778 41315256
    1041851 9p7e:LU (2.59) BS01 rna N/A N/A Q7Z4W8 41315256
    1041852 9p7e:LV (2.59) BS01 rna N/A GO:0000122 ... P62829 41315256
    1041853 9p7e:LV (2.59) BS02 rna N/A GO:0000122 ... P62829 41315256
    1041854 9p7e:LW (2.59) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041855 9p7e:LW (2.59) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041856 9p7e:LX (2.59) BS01 rna N/A N/A P62750 41315256
    1041857 9p7e:LX (2.59) BS02 rna N/A N/A P62750 41315256
    1041858 9p7e:LY (2.59) BS01 rna N/A GO:0002181 ... P61254 41315256
    1041859 9p7e:LY (2.59) BS02 rna N/A GO:0002181 ... P61254 41315256
    1041860 9p7e:LZ (2.59) BS01 rna N/A GO:0002181 ... P61353 41315256
    1041861 9p7e:La (2.59) BS01 rna N/A GO:0002181 ... P46776 41315256
    1041862 9p7e:Lb (2.59) BS01 rna N/A N/A P47914 41315256
    1041863 9p7e:Lc (2.59) BS01 rna N/A N/A P62888 41315256
    1041864 9p7e:Lc (2.59) BS02 rna N/A N/A P62888 41315256
    1041865 9p7e:Ld (2.59) BS01 rna N/A N/A P62899 41315256
    1041866 9p7e:Le (2.59) BS01 rna N/A GO:0002181 ... P62910 41315256
    1041867 9p7e:Le (2.59) BS02 MG N/A GO:0002181 ... P62910 41315256
    1041868 9p7e:Lf (2.59) BS01 rna N/A GO:0002181 ... P18077 41315256
    1041869 9p7e:Lg (2.59) BS01 rna N/A GO:0002181 ... P49207 41315256
    1041870 9p7e:Lg (2.59) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1041871 9p7e:Lh (2.59) BS01 rna N/A GO:0000463 ... P42766 41315256
    1041872 9p7e:Lh (2.59) BS02 rna N/A GO:0000463 ... P42766 41315256
    1041873 9p7e:Li (2.59) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1041874 9p7e:Lj (2.59) BS01 rna N/A N/A P61927 41315256
    1041875 9p7e:Lj (2.59) BS02 rna N/A N/A P61927 41315256
    1041876 9p7e:Lj (2.59) BS03 ZN N/A N/A P61927 41315256
    1041877 9p7e:Lk (2.59) BS01 rna N/A GO:0002181 ... P63173 41315256
    1041878 9p7e:Ll (2.59) BS01 rna N/A GO:0002181 ... P62891 41315256
    1041879 9p7e:Ll (2.59) BS02 rna N/A GO:0002181 ... P62891 41315256
    1041880 9p7e:Lm (2.59) BS01 rna N/A N/A P62987 41315256
    1041881 9p7e:Lm (2.59) BS02 ZN N/A N/A P62987 41315256
    1041882 9p7e:Lo (2.59) BS01 rna N/A GO:0002181 ... P83881 41315256
    1041883 9p7e:Lo (2.59) BS02 rna N/A GO:0002181 ... P83881 41315256
    1041884 9p7e:Lo (2.59) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1041885 9p7e:Lp (2.59) BS01 rna N/A GO:0002181 ... P61513 41315256
    1041886 9p7e:Lp (2.59) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1041887 9p7e:Lr (2.59) BS01 rna N/A GO:0002181 ... P46779 41315256
    1041888 9p7e:Ls (2.59) BS01 rna N/A N/A P05388 41315256
    1041889 9p7e:Lt (2.59) BS01 rna N/A GO:0002181 ... P30050 41315256
    1041890 9p7e:SA (2.59) BS01 rna N/A N/A P08865 41315256
    1041891 9p7e:SB (2.59) BS01 rna N/A N/A P61247 41315256
    1041892 9p7e:SC (2.59) BS01 rna N/A N/A P15880 41315256
    1041893 9p7e:SD (2.59) BS01 rna N/A GO:0001228 ... P23396 41315256
    1041894 9p7e:SE (2.59) BS01 rna N/A GO:0002181 ... P62701 41315256
    1041895 9p7e:SF (2.59) BS01 rna N/A GO:0002181 ... P46782 41315256
    1041896 9p7e:SG (2.59) BS01 rna N/A GO:0002181 ... P62753 41315256
    1041897 9p7e:SH (2.59) BS01 rna N/A GO:0002181 ... P62081 41315256
    1041898 9p7e:SI (2.59) BS01 rna N/A GO:0002181 ... P62241 41315256
    1041899 9p7e:SI (2.59) BS02 rna N/A GO:0002181 ... P62241 41315256
    1041900 9p7e:SJ (2.59) BS01 rna N/A GO:0002181 ... P46781 41315256
    1041901 9p7e:SK (2.59) BS01 rna N/A N/A P46783 41315256
    1041902 9p7e:SL (2.59) BS01 rna N/A GO:0002181 ... P62280 41315256
    1041903 9p7e:SM (2.59) BS01 rna N/A GO:0002181 ... P25398 41315256
    1041904 9p7e:SN (2.59) BS01 rna N/A GO:0000462 ... P62277 41315256
    1041905 9p7e:SN (2.59) BS02 rna N/A GO:0000462 ... P62277 41315256
    1041906 9p7e:SO (2.59) BS01 rna N/A GO:0000028 ... P62263 41315256
    1041907 9p7e:SP (2.59) BS01 rna N/A N/A P62841 41315256
    1041908 9p7e:SP (2.59) BS02 rna N/A N/A P62841 41315256
    1041909 9p7e:SQ (2.59) BS01 rna N/A GO:0000462 ... P62249 41315256
    1041910 9p7e:SR (2.59) BS01 rna N/A GO:0002181 ... P08708 41315256
    1041911 9p7e:SS (2.59) BS01 rna N/A GO:0002181 ... P62269 41315256
    1041912 9p7e:ST (2.59) BS01 rna N/A GO:0000028 ... P39019 41315256
    1041913 9p7e:SU (2.59) BS01 rna N/A N/A P60866 41315256
    1041914 9p7e:SW (2.59) BS01 rna N/A GO:0002181 ... P62244 41315256
    1041915 9p7e:SX (2.59) BS01 rna N/A GO:0002181 ... P62266 41315256
    1041916 9p7e:SY (2.59) BS01 rna N/A GO:0002181 ... P62847 41315256
    1041917 9p7e:SZ (2.59) BS01 rna N/A N/A P62851 41315256
    1041918 9p7e:Sa (2.59) BS01 rna N/A N/A P62854 41315256
    1041919 9p7e:Sa (2.59) BS02 ZN N/A N/A P62854 41315256
    1041920 9p7e:Sb (2.59) BS01 rna N/A GO:0002181 ... P42677 41315256
    1041921 9p7e:Sc (2.59) BS01 rna N/A GO:0000028 ... P62857 41315256
    1041922 9p7e:Sd (2.59) BS01 rna N/A GO:0002181 ... P62273 41315256
    1041923 9p7e:Se (2.59) BS01 rna N/A N/A P62861 41315256
    1041924 9p7e:Sf (2.59) BS01 rna N/A N/A P62979 41315256
    1041925 9p7e:Sg (2.59) BS01 rna N/A GO:0001891 ... P63244 41315256
    1041926 9p7f:CI (3.56) BS01 rna N/A N/A P20290 41315256
    1041927 9p7f:LA (3.56) BS01 rna N/A GO:0002181 ... P62917 41315256
    1041928 9p7f:LA (3.56) BS02 MG N/A GO:0002181 ... P62917 41315256
    1041929 9p7f:LB (3.56) BS01 rna N/A GO:0002181 ... P39023 41315256
    1041930 9p7f:LC (3.56) BS01 rna N/A N/A P36578 41315256
    1041931 9p7f:LC (3.56) BS02 rna N/A N/A P36578 41315256
    1041932 9p7f:LD (3.56) BS01 rna N/A GO:0000027 ... P46777 41315256
    1041933 9p7f:LD (3.56) BS02 rna N/A GO:0000027 ... P46777 41315256
    1041934 9p7f:LE (3.56) BS01 rna N/A N/A Q02878 41315256
    1041935 9p7f:LF (3.56) BS01 rna N/A GO:0000463 ... P18124 41315256
    1041936 9p7f:LF (3.56) BS02 rna N/A GO:0000463 ... P18124 41315256
    1041937 9p7f:LG (3.56) BS01 rna N/A GO:0000470 ... P62424 41315256
    1041938 9p7f:LG (3.56) BS02 rna N/A GO:0000470 ... P62424 41315256
    1041939 9p7f:LH (3.56) BS01 rna N/A GO:0002181 ... P32969 41315256
    1041940 9p7f:LI (3.56) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1041941 9p7f:LI (3.56) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1041942 9p7f:LI (3.56) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1041943 9p7f:LJ (3.56) BS01 rna N/A GO:0000027 ... P62913 41315256
    1041944 9p7f:LJ (3.56) BS02 rna N/A GO:0000027 ... P62913 41315256
    1041945 9p7f:LL (3.56) BS01 rna N/A GO:0002181 ... P26373 41315256
    1041946 9p7f:LL (3.56) BS02 rna N/A GO:0002181 ... P26373 41315256
    1041947 9p7f:LM (3.56) BS01 rna N/A N/A P50914 41315256
    1041948 9p7f:LN (3.56) BS01 rna N/A GO:0002181 ... P61313 41315256
    1041949 9p7f:LN (3.56) BS02 rna N/A GO:0002181 ... P61313 41315256
    1041950 9p7f:LO (3.56) BS01 rna N/A GO:0002181 ... P40429 41315256
    1041951 9p7f:LP (3.56) BS01 rna N/A N/A P18621 41315256
    1041952 9p7f:LP (3.56) BS02 rna N/A N/A P18621 41315256
    1041953 9p7f:LQ (3.56) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1041954 9p7f:LR (3.56) BS01 rna N/A GO:0002181 ... P84098 41315256
    1041955 9p7f:LR (3.56) BS02 rna N/A GO:0002181 ... P84098 41315256
    1041956 9p7f:LS (3.56) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1041957 9p7f:LS (3.56) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1041958 9p7f:LT (3.56) BS01 rna N/A GO:0001650 ... P46778 41315256
    1041959 9p7f:LT (3.56) BS02 rna N/A GO:0001650 ... P46778 41315256
    1041960 9p7f:LU (3.56) BS01 rna N/A N/A Q7Z4W8 41315256
    1041961 9p7f:LV (3.56) BS01 rna N/A GO:0000122 ... P62829 41315256
    1041962 9p7f:LV (3.56) BS02 rna N/A GO:0000122 ... P62829 41315256
    1041963 9p7f:LW (3.56) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041964 9p7f:LW (3.56) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1041965 9p7f:LX (3.56) BS01 rna N/A N/A P62750 41315256
    1041966 9p7f:LX (3.56) BS02 rna N/A N/A P62750 41315256
    1041967 9p7f:LY (3.56) BS01 rna N/A GO:0002181 ... P61254 41315256
    1041968 9p7f:LY (3.56) BS02 rna N/A GO:0002181 ... P61254 41315256
    1041969 9p7f:LZ (3.56) BS01 rna N/A GO:0002181 ... P61353 41315256
    1041970 9p7f:La (3.56) BS01 rna N/A GO:0002181 ... P46776 41315256
    1041971 9p7f:Lb (3.56) BS01 rna N/A N/A P47914 41315256
    1041972 9p7f:Lc (3.56) BS01 rna N/A N/A P62888 41315256
    1041973 9p7f:Ld (3.56) BS01 rna N/A N/A P62899 41315256
    1041974 9p7f:Le (3.56) BS01 rna N/A GO:0002181 ... P62910 41315256
    1041975 9p7f:Le (3.56) BS02 MG N/A GO:0002181 ... P62910 41315256
    1041976 9p7f:Lf (3.56) BS01 rna N/A GO:0002181 ... P18077 41315256
    1041977 9p7f:Lg (3.56) BS01 rna N/A GO:0002181 ... P49207 41315256
    1041978 9p7f:Lh (3.56) BS01 rna N/A GO:0000463 ... P42766 41315256
    1041979 9p7f:Lh (3.56) BS02 rna N/A GO:0000463 ... P42766 41315256
    1041980 9p7f:Li (3.56) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1041981 9p7f:Lj (3.56) BS01 rna N/A N/A P61927 41315256
    1041982 9p7f:Lj (3.56) BS02 rna N/A N/A P61927 41315256
    1041983 9p7f:Lj (3.56) BS03 ZN N/A N/A P61927 41315256
    1041984 9p7f:Lk (3.56) BS01 rna N/A GO:0002181 ... P63173 41315256
    1041985 9p7f:Ll (3.56) BS01 rna N/A GO:0002181 ... P62891 41315256
    1041986 9p7f:Ll (3.56) BS02 rna N/A GO:0002181 ... P62891 41315256
    1041987 9p7f:Lm (3.56) BS01 rna N/A N/A P62987 41315256
    1041988 9p7f:Lm (3.56) BS02 ZN N/A N/A P62987 41315256
    1041989 9p7f:Lo (3.56) BS01 rna N/A GO:0002181 ... P83881 41315256
    1041990 9p7f:Lo (3.56) BS02 rna N/A GO:0002181 ... P83881 41315256
    1041991 9p7f:Lo (3.56) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1041992 9p7f:Lp (3.56) BS01 rna N/A GO:0002181 ... P61513 41315256
    1041993 9p7f:Lp (3.56) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1041994 9p7f:Lr (3.56) BS01 rna N/A GO:0002181 ... P46779 41315256
    1041995 9p7f:Ls (3.56) BS01 rna N/A N/A P05388 41315256
    1041996 9p7f:Lt (3.56) BS01 rna N/A GO:0002181 ... P30050 41315256
    1041997 9p7f:SA (3.56) BS01 rna N/A N/A P08865 41315256
    1041998 9p7f:SB (3.56) BS01 rna N/A N/A P61247 41315256
    1041999 9p7f:SC (3.56) BS01 rna N/A N/A P15880 41315256
    1042000 9p7f:SD (3.56) BS01 rna N/A GO:0001228 ... P23396 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).