SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1042001 9p7f:SE (3.56) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042002 9p7f:SF (3.56) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042003 9p7f:SG (3.56) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042004 9p7f:SH (3.56) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042005 9p7f:SI (3.56) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042006 9p7f:SI (3.56) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042007 9p7f:SJ (3.56) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042008 9p7f:SK (3.56) BS01 rna N/A N/A P46783 41315256
    1042009 9p7f:SL (3.56) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042010 9p7f:SM (3.56) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042011 9p7f:SN (3.56) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042012 9p7f:SN (3.56) BS02 rna N/A GO:0000462 ... P62277 41315256
    1042013 9p7f:SO (3.56) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042014 9p7f:SP (3.56) BS01 rna N/A N/A P62841 41315256
    1042015 9p7f:SQ (3.56) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042016 9p7f:SR (3.56) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042017 9p7f:SS (3.56) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042018 9p7f:SS (3.56) BS02 MG N/A GO:0002181 ... P62269 41315256
    1042019 9p7f:ST (3.56) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042020 9p7f:SU (3.56) BS01 rna N/A N/A P60866 41315256
    1042021 9p7f:SW (3.56) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042022 9p7f:SX (3.56) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042023 9p7f:SY (3.56) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042024 9p7f:SZ (3.56) BS01 rna N/A N/A P62851 41315256
    1042025 9p7f:Sa (3.56) BS01 rna N/A N/A P62854 41315256
    1042026 9p7f:Sa (3.56) BS02 ZN N/A N/A P62854 41315256
    1042027 9p7f:Sb (3.56) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042028 9p7f:Sc (3.56) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042029 9p7f:Sd (3.56) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042030 9p7f:Se (3.56) BS01 rna N/A N/A P62861 41315256
    1042031 9p7f:Sf (3.56) BS01 rna N/A N/A P62979 41315256
    1042032 9p7f:Sg (3.56) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042033 9p7g:CI (3.54) BS01 rna N/A N/A P20290 41315256
    1042034 9p7g:LA (3.54) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042035 9p7g:LA (3.54) BS02 MG N/A GO:0002181 ... P62917 41315256
    1042036 9p7g:LB (3.54) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042037 9p7g:LB (3.54) BS02 MG N/A GO:0002181 ... P39023 41315256
    1042038 9p7g:LC (3.54) BS01 rna N/A N/A P36578 41315256
    1042039 9p7g:LC (3.54) BS02 rna N/A N/A P36578 41315256
    1042040 9p7g:LD (3.54) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042041 9p7g:LD (3.54) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042042 9p7g:LE (3.54) BS01 rna N/A N/A Q02878 41315256
    1042043 9p7g:LF (3.54) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042044 9p7g:LF (3.54) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042045 9p7g:LG (3.54) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042046 9p7g:LG (3.54) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042047 9p7g:LH (3.54) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042048 9p7g:LI (3.54) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042049 9p7g:LI (3.54) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042050 9p7g:LI (3.54) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042051 9p7g:LJ (3.54) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042052 9p7g:LJ (3.54) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042053 9p7g:LJ (3.54) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042054 9p7g:LL (3.54) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042055 9p7g:LL (3.54) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042056 9p7g:LM (3.54) BS01 rna N/A N/A P50914 41315256
    1042057 9p7g:LN (3.54) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042058 9p7g:LN (3.54) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042059 9p7g:LN (3.54) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042060 9p7g:LO (3.54) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042061 9p7g:LP (3.54) BS01 rna N/A N/A P18621 41315256
    1042062 9p7g:LP (3.54) BS02 rna N/A N/A P18621 41315256
    1042063 9p7g:LQ (3.54) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042064 9p7g:LR (3.54) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042065 9p7g:LR (3.54) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042066 9p7g:LS (3.54) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042067 9p7g:LS (3.54) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042068 9p7g:LT (3.54) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042069 9p7g:LT (3.54) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042070 9p7g:LU (3.54) BS01 rna N/A N/A Q7Z4W8 41315256
    1042071 9p7g:LV (3.54) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042072 9p7g:LV (3.54) BS02 rna N/A GO:0000122 ... P62829 41315256
    1042073 9p7g:LW (3.54) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042074 9p7g:LW (3.54) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042075 9p7g:LX (3.54) BS01 rna N/A N/A P62750 41315256
    1042076 9p7g:LX (3.54) BS02 rna N/A N/A P62750 41315256
    1042077 9p7g:LY (3.54) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042078 9p7g:LY (3.54) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042079 9p7g:LZ (3.54) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042080 9p7g:La (3.54) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042081 9p7g:Lb (3.54) BS01 rna N/A N/A P47914 41315256
    1042082 9p7g:Lc (3.54) BS01 rna N/A N/A P62888 41315256
    1042083 9p7g:Ld (3.54) BS01 rna N/A N/A P62899 41315256
    1042084 9p7g:Le (3.54) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042085 9p7g:Lf (3.54) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042086 9p7g:Lg (3.54) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042087 9p7g:Lh (3.54) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042088 9p7g:Lh (3.54) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042089 9p7g:Li (3.54) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042090 9p7g:Lj (3.54) BS01 rna N/A N/A P61927 41315256
    1042091 9p7g:Lj (3.54) BS02 rna N/A N/A P61927 41315256
    1042092 9p7g:Lj (3.54) BS03 ZN N/A N/A P61927 41315256
    1042093 9p7g:Lk (3.54) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042094 9p7g:Ll (3.54) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042095 9p7g:Ll (3.54) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042096 9p7g:Lm (3.54) BS01 rna N/A N/A P62987 41315256
    1042097 9p7g:Lm (3.54) BS02 ZN N/A N/A P62987 41315256
    1042098 9p7g:Lo (3.54) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042099 9p7g:Lo (3.54) BS02 rna N/A GO:0002181 ... P83881 41315256
    1042100 9p7g:Lo (3.54) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1042101 9p7g:Lp (3.54) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042102 9p7g:Lp (3.54) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042103 9p7g:Lr (3.54) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042104 9p7g:Ls (3.54) BS01 rna N/A N/A P05388 41315256
    1042105 9p7g:Lt (3.54) BS01 rna N/A GO:0002181 ... P30050 41315256
    1042106 9p7g:SA (3.54) BS01 rna N/A N/A P08865 41315256
    1042107 9p7g:SB (3.54) BS01 rna N/A N/A P61247 41315256
    1042108 9p7g:SC (3.54) BS01 rna N/A N/A P15880 41315256
    1042109 9p7g:SD (3.54) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042110 9p7g:SE (3.54) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042111 9p7g:SF (3.54) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042112 9p7g:SG (3.54) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042113 9p7g:SH (3.54) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042114 9p7g:SI (3.54) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042115 9p7g:SI (3.54) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042116 9p7g:SJ (3.54) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042117 9p7g:SK (3.54) BS01 rna N/A N/A P46783 41315256
    1042118 9p7g:SL (3.54) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042119 9p7g:SM (3.54) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042120 9p7g:SN (3.54) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042121 9p7g:SN (3.54) BS02 rna N/A GO:0000462 ... P62277 41315256
    1042122 9p7g:SO (3.54) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042123 9p7g:SP (3.54) BS01 rna N/A N/A P62841 41315256
    1042124 9p7g:SP (3.54) BS02 rna N/A N/A P62841 41315256
    1042125 9p7g:SQ (3.54) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042126 9p7g:SR (3.54) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042127 9p7g:SS (3.54) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042128 9p7g:SS (3.54) BS02 MG N/A GO:0002181 ... P62269 41315256
    1042129 9p7g:ST (3.54) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042130 9p7g:SU (3.54) BS01 rna N/A N/A P60866 41315256
    1042131 9p7g:SW (3.54) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042132 9p7g:SX (3.54) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042133 9p7g:SY (3.54) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042134 9p7g:SZ (3.54) BS01 rna N/A N/A P62851 41315256
    1042135 9p7g:SZ (3.54) BS02 rna N/A N/A P62851 41315256
    1042136 9p7g:Sa (3.54) BS01 rna N/A N/A P62854 41315256
    1042137 9p7g:Sa (3.54) BS02 ZN N/A N/A P62854 41315256
    1042138 9p7g:Sb (3.54) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042139 9p7g:Sc (3.54) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042140 9p7g:Sd (3.54) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042141 9p7g:Se (3.54) BS01 rna N/A N/A P62861 41315256
    1042142 9p7g:Sf (3.54) BS01 rna N/A N/A P62979 41315256
    1042143 9p7g:Sg (3.54) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042144 9p7h:CF (3.68) BS01 rna N/A GO:0000049 ... P68104 41315256
    1042145 9p7h:CF (3.68) BS02 rna N/A GO:0000049 ... P68104 41315256
    1042146 9p7h:CI (3.68) BS01 rna N/A N/A P20290 41315256
    1042147 9p7h:LA (3.68) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042148 9p7h:LA (3.68) BS02 MG N/A GO:0002181 ... P62917 41315256
    1042149 9p7h:LB (3.68) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042150 9p7h:LB (3.68) BS02 MG N/A GO:0002181 ... P39023 41315256
    1042151 9p7h:LC (3.68) BS01 rna N/A N/A P36578 41315256
    1042152 9p7h:LC (3.68) BS02 rna N/A N/A P36578 41315256
    1042153 9p7h:LD (3.68) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042154 9p7h:LD (3.68) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042155 9p7h:LE (3.68) BS01 rna N/A N/A Q02878 41315256
    1042156 9p7h:LF (3.68) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042157 9p7h:LF (3.68) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042158 9p7h:LG (3.68) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042159 9p7h:LG (3.68) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042160 9p7h:LH (3.68) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042161 9p7h:LI (3.68) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042162 9p7h:LI (3.68) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042163 9p7h:LI (3.68) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042164 9p7h:LJ (3.68) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042165 9p7h:LJ (3.68) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042166 9p7h:LJ (3.68) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042167 9p7h:LL (3.68) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042168 9p7h:LL (3.68) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042169 9p7h:LM (3.68) BS01 rna N/A N/A P50914 41315256
    1042170 9p7h:LN (3.68) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042171 9p7h:LN (3.68) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042172 9p7h:LN (3.68) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042173 9p7h:LO (3.68) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042174 9p7h:LP (3.68) BS01 rna N/A N/A P18621 41315256
    1042175 9p7h:LP (3.68) BS02 rna N/A N/A P18621 41315256
    1042176 9p7h:LQ (3.68) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042177 9p7h:LR (3.68) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042178 9p7h:LR (3.68) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042179 9p7h:LS (3.68) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042180 9p7h:LS (3.68) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042181 9p7h:LT (3.68) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042182 9p7h:LT (3.68) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042183 9p7h:LU (3.68) BS01 rna N/A N/A Q7Z4W8 41315256
    1042184 9p7h:LV (3.68) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042185 9p7h:LW (3.68) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042186 9p7h:LW (3.68) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042187 9p7h:LX (3.68) BS01 rna N/A N/A P62750 41315256
    1042188 9p7h:LX (3.68) BS02 rna N/A N/A P62750 41315256
    1042189 9p7h:LY (3.68) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042190 9p7h:LY (3.68) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042191 9p7h:LZ (3.68) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042192 9p7h:La (3.68) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042193 9p7h:Lb (3.68) BS01 rna N/A N/A P47914 41315256
    1042194 9p7h:Lc (3.68) BS01 rna N/A N/A P62888 41315256
    1042195 9p7h:Ld (3.68) BS01 rna N/A N/A P62899 41315256
    1042196 9p7h:Le (3.68) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042197 9p7h:Le (3.68) BS02 MG N/A GO:0002181 ... P62910 41315256
    1042198 9p7h:Lf (3.68) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042199 9p7h:Lg (3.68) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042200 9p7h:Lg (3.68) BS02 ZN N/A GO:0002181 ... P49207 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).