SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1042201 9p7h:Lh (3.68) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042202 9p7h:Lh (3.68) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042203 9p7h:Li (3.68) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042204 9p7h:Lj (3.68) BS01 rna N/A N/A P61927 41315256
    1042205 9p7h:Lj (3.68) BS02 rna N/A N/A P61927 41315256
    1042206 9p7h:Lj (3.68) BS03 ZN N/A N/A P61927 41315256
    1042207 9p7h:Lk (3.68) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042208 9p7h:Ll (3.68) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042209 9p7h:Ll (3.68) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042210 9p7h:Lm (3.68) BS01 rna N/A N/A P62987 41315256
    1042211 9p7h:Lm (3.68) BS02 ZN N/A N/A P62987 41315256
    1042212 9p7h:Lo (3.68) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042213 9p7h:Lo (3.68) BS02 rna N/A GO:0002181 ... P83881 41315256
    1042214 9p7h:Lo (3.68) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1042215 9p7h:Lp (3.68) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042216 9p7h:Lp (3.68) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042217 9p7h:Lr (3.68) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042218 9p7h:Ls (3.68) BS01 rna N/A N/A P05388 41315256
    1042219 9p7h:Lt (3.68) BS01 rna N/A GO:0002181 ... P30050 41315256
    1042220 9p7h:SA (3.68) BS01 rna N/A N/A P08865 41315256
    1042221 9p7h:SB (3.68) BS01 rna N/A N/A P61247 41315256
    1042222 9p7h:SC (3.68) BS01 rna N/A N/A P15880 41315256
    1042223 9p7h:SD (3.68) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042224 9p7h:SE (3.68) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042225 9p7h:SF (3.68) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042226 9p7h:SG (3.68) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042227 9p7h:SH (3.68) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042228 9p7h:SI (3.68) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042229 9p7h:SI (3.68) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042230 9p7h:SJ (3.68) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042231 9p7h:SK (3.68) BS01 rna N/A N/A P46783 41315256
    1042232 9p7h:SL (3.68) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042233 9p7h:SM (3.68) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042234 9p7h:SN (3.68) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042235 9p7h:SO (3.68) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042236 9p7h:SP (3.68) BS01 rna N/A N/A P62841 41315256
    1042237 9p7h:SQ (3.68) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042238 9p7h:SR (3.68) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042239 9p7h:SS (3.68) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042240 9p7h:ST (3.68) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042241 9p7h:SU (3.68) BS01 rna N/A N/A P60866 41315256
    1042242 9p7h:SW (3.68) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042243 9p7h:SX (3.68) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042244 9p7h:SY (3.68) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042245 9p7h:SZ (3.68) BS01 rna N/A N/A P62851 41315256
    1042246 9p7h:Sa (3.68) BS01 rna N/A N/A P62854 41315256
    1042247 9p7h:Sa (3.68) BS02 ZN N/A N/A P62854 41315256
    1042248 9p7h:Sb (3.68) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042249 9p7h:Sc (3.68) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042250 9p7h:Sd (3.68) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042251 9p7h:Se (3.68) BS01 rna N/A N/A P62861 41315256
    1042252 9p7h:Sf (3.68) BS01 rna N/A N/A P62979 41315256
    1042253 9p7h:Sg (3.68) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042254 9p7i:CF (3.69) BS01 rna N/A GO:0000049 ... P68104 41315256
    1042255 9p7i:CF (3.69) BS02 rna N/A GO:0000049 ... P68104 41315256
    1042256 9p7i:CI (3.69) BS01 rna N/A N/A P20290 41315256
    1042257 9p7i:LA (3.69) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042258 9p7i:LA (3.69) BS02 MG N/A GO:0002181 ... P62917 41315256
    1042259 9p7i:LB (3.69) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042260 9p7i:LC (3.69) BS01 rna N/A N/A P36578 41315256
    1042261 9p7i:LC (3.69) BS02 rna N/A N/A P36578 41315256
    1042262 9p7i:LD (3.69) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042263 9p7i:LD (3.69) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042264 9p7i:LE (3.69) BS01 rna N/A N/A Q02878 41315256
    1042265 9p7i:LF (3.69) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042266 9p7i:LF (3.69) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042267 9p7i:LG (3.69) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042268 9p7i:LG (3.69) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042269 9p7i:LH (3.69) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042270 9p7i:LI (3.69) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042271 9p7i:LI (3.69) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042272 9p7i:LI (3.69) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042273 9p7i:LJ (3.69) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042274 9p7i:LJ (3.69) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042275 9p7i:LJ (3.69) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042276 9p7i:LL (3.69) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042277 9p7i:LL (3.69) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042278 9p7i:LM (3.69) BS01 rna N/A N/A P50914 41315256
    1042279 9p7i:LN (3.69) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042280 9p7i:LN (3.69) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042281 9p7i:LO (3.69) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042282 9p7i:LP (3.69) BS01 rna N/A N/A P18621 41315256
    1042283 9p7i:LP (3.69) BS02 rna N/A N/A P18621 41315256
    1042284 9p7i:LQ (3.69) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042285 9p7i:LR (3.69) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042286 9p7i:LR (3.69) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042287 9p7i:LS (3.69) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042288 9p7i:LS (3.69) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042289 9p7i:LT (3.69) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042290 9p7i:LT (3.69) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042291 9p7i:LU (3.69) BS01 rna N/A N/A Q7Z4W8 41315256
    1042292 9p7i:LV (3.69) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042293 9p7i:LW (3.69) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042294 9p7i:LW (3.69) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042295 9p7i:LX (3.69) BS01 rna N/A N/A P62750 41315256
    1042296 9p7i:LX (3.69) BS02 rna N/A N/A P62750 41315256
    1042297 9p7i:LY (3.69) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042298 9p7i:LY (3.69) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042299 9p7i:LZ (3.69) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042300 9p7i:La (3.69) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042301 9p7i:Lb (3.69) BS01 rna N/A N/A P47914 41315256
    1042302 9p7i:Lc (3.69) BS01 rna N/A N/A P62888 41315256
    1042303 9p7i:Ld (3.69) BS01 rna N/A N/A P62899 41315256
    1042304 9p7i:Le (3.69) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042305 9p7i:Le (3.69) BS02 MG N/A GO:0002181 ... P62910 41315256
    1042306 9p7i:Lf (3.69) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042307 9p7i:Lg (3.69) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042308 9p7i:Lg (3.69) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1042309 9p7i:Lh (3.69) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042310 9p7i:Lh (3.69) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042311 9p7i:Li (3.69) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042312 9p7i:Lj (3.69) BS01 rna N/A N/A P61927 41315256
    1042313 9p7i:Lj (3.69) BS02 rna N/A N/A P61927 41315256
    1042314 9p7i:Lj (3.69) BS03 ZN N/A N/A P61927 41315256
    1042315 9p7i:Lk (3.69) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042316 9p7i:Ll (3.69) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042317 9p7i:Ll (3.69) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042318 9p7i:Lm (3.69) BS01 rna N/A N/A P62987 41315256
    1042319 9p7i:Lm (3.69) BS02 ZN N/A N/A P62987 41315256
    1042320 9p7i:Lo (3.69) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042321 9p7i:Lo (3.69) BS02 rna N/A GO:0002181 ... P83881 41315256
    1042322 9p7i:Lo (3.69) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1042323 9p7i:Lp (3.69) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042324 9p7i:Lp (3.69) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042325 9p7i:Lr (3.69) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042326 9p7i:Ls (3.69) BS01 rna N/A N/A P05388 41315256
    1042327 9p7i:Lt (3.69) BS01 rna N/A GO:0002181 ... P30050 41315256
    1042328 9p7i:SA (3.69) BS01 rna N/A N/A P08865 41315256
    1042329 9p7i:SB (3.69) BS01 rna N/A N/A P61247 41315256
    1042330 9p7i:SC (3.69) BS01 rna N/A N/A P15880 41315256
    1042331 9p7i:SD (3.69) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042332 9p7i:SE (3.69) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042333 9p7i:SF (3.69) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042334 9p7i:SG (3.69) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042335 9p7i:SH (3.69) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042336 9p7i:SI (3.69) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042337 9p7i:SI (3.69) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042338 9p7i:SJ (3.69) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042339 9p7i:SK (3.69) BS01 rna N/A N/A P46783 41315256
    1042340 9p7i:SL (3.69) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042341 9p7i:SM (3.69) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042342 9p7i:SN (3.69) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042343 9p7i:SN (3.69) BS02 rna N/A GO:0000462 ... P62277 41315256
    1042344 9p7i:SO (3.69) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042345 9p7i:SP (3.69) BS01 rna N/A N/A P62841 41315256
    1042346 9p7i:SQ (3.69) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042347 9p7i:SR (3.69) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042348 9p7i:SS (3.69) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042349 9p7i:ST (3.69) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042350 9p7i:SU (3.69) BS01 rna N/A N/A P60866 41315256
    1042351 9p7i:SW (3.69) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042352 9p7i:SX (3.69) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042353 9p7i:SY (3.69) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042354 9p7i:SZ (3.69) BS01 rna N/A N/A P62851 41315256
    1042355 9p7i:SZ (3.69) BS02 rna N/A N/A P62851 41315256
    1042356 9p7i:Sa (3.69) BS01 rna N/A N/A P62854 41315256
    1042357 9p7i:Sa (3.69) BS02 ZN N/A N/A P62854 41315256
    1042358 9p7i:Sb (3.69) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042359 9p7i:Sc (3.69) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042360 9p7i:Sd (3.69) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042361 9p7i:Se (3.69) BS01 rna N/A N/A P62861 41315256
    1042362 9p7i:Sf (3.69) BS01 rna N/A N/A P62979 41315256
    1042363 9p7i:Sg (3.69) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042364 9p7j:CI (3.91) BS01 rna N/A N/A P20290 41315256
    1042365 9p7j:LA (3.91) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042366 9p7j:LA (3.91) BS02 rna N/A GO:0002181 ... P62917 41315256
    1042367 9p7j:LA (3.91) BS03 MG N/A GO:0002181 ... P62917 41315256
    1042368 9p7j:LB (3.91) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042369 9p7j:LC (3.91) BS01 rna N/A N/A P36578 41315256
    1042370 9p7j:LC (3.91) BS02 rna N/A N/A P36578 41315256
    1042371 9p7j:LD (3.91) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042372 9p7j:LD (3.91) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042373 9p7j:LE (3.91) BS01 rna N/A N/A Q02878 41315256
    1042374 9p7j:LF (3.91) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042375 9p7j:LF (3.91) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042376 9p7j:LG (3.91) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042377 9p7j:LG (3.91) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042378 9p7j:LH (3.91) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042379 9p7j:LI (3.91) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042380 9p7j:LI (3.91) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042381 9p7j:LI (3.91) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042382 9p7j:LJ (3.91) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042383 9p7j:LJ (3.91) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042384 9p7j:LJ (3.91) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042385 9p7j:LL (3.91) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042386 9p7j:LL (3.91) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042387 9p7j:LM (3.91) BS01 rna N/A N/A P50914 41315256
    1042388 9p7j:LN (3.91) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042389 9p7j:LN (3.91) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042390 9p7j:LN (3.91) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042391 9p7j:LO (3.91) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042392 9p7j:LP (3.91) BS01 rna N/A N/A P18621 41315256
    1042393 9p7j:LP (3.91) BS02 rna N/A N/A P18621 41315256
    1042394 9p7j:LQ (3.91) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042395 9p7j:LR (3.91) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042396 9p7j:LR (3.91) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042397 9p7j:LS (3.91) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042398 9p7j:LS (3.91) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042399 9p7j:LT (3.91) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042400 9p7j:LT (3.91) BS02 rna N/A GO:0001650 ... P46778 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).