SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1042401 9p7j:LU (3.91) BS01 rna N/A N/A Q7Z4W8 41315256
    1042402 9p7j:LV (3.91) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042403 9p7j:LW (3.91) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042404 9p7j:LW (3.91) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042405 9p7j:LX (3.91) BS01 rna N/A N/A P62750 41315256
    1042406 9p7j:LX (3.91) BS02 rna N/A N/A P62750 41315256
    1042407 9p7j:LY (3.91) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042408 9p7j:LY (3.91) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042409 9p7j:LZ (3.91) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042410 9p7j:La (3.91) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042411 9p7j:Lb (3.91) BS01 rna N/A N/A P47914 41315256
    1042412 9p7j:Lc (3.91) BS01 rna N/A N/A P62888 41315256
    1042413 9p7j:Ld (3.91) BS01 rna N/A N/A P62899 41315256
    1042414 9p7j:Le (3.91) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042415 9p7j:Le (3.91) BS02 MG N/A GO:0002181 ... P62910 41315256
    1042416 9p7j:Lf (3.91) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042417 9p7j:Lg (3.91) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042418 9p7j:Lg (3.91) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1042419 9p7j:Lh (3.91) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042420 9p7j:Lh (3.91) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042421 9p7j:Li (3.91) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042422 9p7j:Lj (3.91) BS01 rna N/A N/A P61927 41315256
    1042423 9p7j:Lj (3.91) BS02 rna N/A N/A P61927 41315256
    1042424 9p7j:Lj (3.91) BS03 ZN N/A N/A P61927 41315256
    1042425 9p7j:Lk (3.91) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042426 9p7j:Ll (3.91) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042427 9p7j:Ll (3.91) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042428 9p7j:Lm (3.91) BS01 rna N/A N/A P62987 41315256
    1042429 9p7j:Lm (3.91) BS02 ZN N/A N/A P62987 41315256
    1042430 9p7j:Lo (3.91) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042431 9p7j:Lo (3.91) BS02 rna N/A GO:0002181 ... P83881 41315256
    1042432 9p7j:Lo (3.91) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1042433 9p7j:Lp (3.91) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042434 9p7j:Lp (3.91) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042435 9p7j:Lr (3.91) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042436 9p7j:Ls (3.91) BS01 rna N/A N/A P05388 41315256
    1042437 9p7j:Lt (3.91) BS01 rna N/A GO:0002181 ... P30050 41315256
    1042438 9p7j:SA (3.91) BS01 rna N/A N/A P08865 41315256
    1042439 9p7j:SB (3.91) BS01 rna N/A N/A P61247 41315256
    1042440 9p7j:SC (3.91) BS01 rna N/A N/A P15880 41315256
    1042441 9p7j:SD (3.91) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042442 9p7j:SE (3.91) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042443 9p7j:SF (3.91) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042444 9p7j:SG (3.91) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042445 9p7j:SH (3.91) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042446 9p7j:SI (3.91) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042447 9p7j:SI (3.91) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042448 9p7j:SJ (3.91) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042449 9p7j:SK (3.91) BS01 rna N/A N/A P46783 41315256
    1042450 9p7j:SL (3.91) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042451 9p7j:SM (3.91) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042452 9p7j:SN (3.91) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042453 9p7j:SN (3.91) BS02 rna N/A GO:0000462 ... P62277 41315256
    1042454 9p7j:SO (3.91) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042455 9p7j:SP (3.91) BS01 rna N/A N/A P62841 41315256
    1042456 9p7j:SQ (3.91) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042457 9p7j:SR (3.91) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042458 9p7j:SS (3.91) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042459 9p7j:ST (3.91) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042460 9p7j:SU (3.91) BS01 rna N/A N/A P60866 41315256
    1042461 9p7j:SW (3.91) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042462 9p7j:SX (3.91) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042463 9p7j:SY (3.91) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042464 9p7j:SZ (3.91) BS01 rna N/A N/A P62851 41315256
    1042465 9p7j:Sa (3.91) BS01 rna N/A N/A P62854 41315256
    1042466 9p7j:Sa (3.91) BS02 ZN N/A N/A P62854 41315256
    1042467 9p7j:Sb (3.91) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042468 9p7j:Sc (3.91) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042469 9p7j:Sd (3.91) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042470 9p7j:Se (3.91) BS01 rna N/A N/A P62861 41315256
    1042471 9p7j:Sf (3.91) BS01 rna N/A N/A P62979 41315256
    1042472 9p7j:Sg (3.91) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042473 9p7k:CF (2.8) BS01 rna N/A GO:0000049 ... P68104 41315256
    1042474 9p7k:CF (2.8) BS02 rna N/A GO:0000049 ... P68104 41315256
    1042475 9p7k:CI (2.8) BS01 rna N/A N/A P20290 41315256
    1042476 9p7k:LA (2.8) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042477 9p7k:LA (2.8) BS02 MG N/A GO:0002181 ... P62917 41315256
    1042478 9p7k:LB (2.8) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042479 9p7k:LC (2.8) BS01 rna N/A N/A P36578 41315256
    1042480 9p7k:LC (2.8) BS02 rna N/A N/A P36578 41315256
    1042481 9p7k:LD (2.8) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042482 9p7k:LD (2.8) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042483 9p7k:LE (2.8) BS01 rna N/A N/A Q02878 41315256
    1042484 9p7k:LF (2.8) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042485 9p7k:LF (2.8) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042486 9p7k:LG (2.8) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042487 9p7k:LG (2.8) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042488 9p7k:LH (2.8) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042489 9p7k:LI (2.8) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042490 9p7k:LI (2.8) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042491 9p7k:LI (2.8) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042492 9p7k:LJ (2.8) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042493 9p7k:LJ (2.8) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042494 9p7k:LJ (2.8) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042495 9p7k:LL (2.8) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042496 9p7k:LL (2.8) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042497 9p7k:LM (2.8) BS01 rna N/A N/A P50914 41315256
    1042498 9p7k:LN (2.8) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042499 9p7k:LN (2.8) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042500 9p7k:LN (2.8) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042501 9p7k:LO (2.8) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042502 9p7k:LP (2.8) BS01 rna N/A N/A P18621 41315256
    1042503 9p7k:LP (2.8) BS02 rna N/A N/A P18621 41315256
    1042504 9p7k:LQ (2.8) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042505 9p7k:LR (2.8) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042506 9p7k:LR (2.8) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042507 9p7k:LS (2.8) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042508 9p7k:LS (2.8) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042509 9p7k:LT (2.8) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042510 9p7k:LT (2.8) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042511 9p7k:LU (2.8) BS01 rna N/A N/A Q7Z4W8 41315256
    1042512 9p7k:LV (2.8) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042513 9p7k:LW (2.8) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042514 9p7k:LW (2.8) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042515 9p7k:LX (2.8) BS01 rna N/A N/A P62750 41315256
    1042516 9p7k:LX (2.8) BS02 rna N/A N/A P62750 41315256
    1042517 9p7k:LY (2.8) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042518 9p7k:LY (2.8) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042519 9p7k:LZ (2.8) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042520 9p7k:La (2.8) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042521 9p7k:Lb (2.8) BS01 rna N/A N/A P47914 41315256
    1042522 9p7k:Lc (2.8) BS01 rna N/A N/A P62888 41315256
    1042523 9p7k:Ld (2.8) BS01 rna N/A N/A P62899 41315256
    1042524 9p7k:Le (2.8) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042525 9p7k:Le (2.8) BS02 MG N/A GO:0002181 ... P62910 41315256
    1042526 9p7k:Lf (2.8) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042527 9p7k:Lg (2.8) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042528 9p7k:Lg (2.8) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1042529 9p7k:Lh (2.8) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042530 9p7k:Lh (2.8) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042531 9p7k:Li (2.8) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042532 9p7k:Lj (2.8) BS01 rna N/A N/A P61927 41315256
    1042533 9p7k:Lj (2.8) BS02 rna N/A N/A P61927 41315256
    1042534 9p7k:Lj (2.8) BS03 ZN N/A N/A P61927 41315256
    1042535 9p7k:Lk (2.8) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042536 9p7k:Ll (2.8) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042537 9p7k:Ll (2.8) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042538 9p7k:Lm (2.8) BS01 rna N/A N/A P62987 41315256
    1042539 9p7k:Lm (2.8) BS02 ZN N/A N/A P62987 41315256
    1042540 9p7k:Lo (2.8) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042541 9p7k:Lo (2.8) BS02 rna N/A GO:0002181 ... P83881 41315256
    1042542 9p7k:Lo (2.8) BS03 rna N/A GO:0002181 ... P83881 41315256
    1042543 9p7k:Lo (2.8) BS04 ZN N/A GO:0002181 ... P83881 41315256
    1042544 9p7k:Lp (2.8) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042545 9p7k:Lp (2.8) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042546 9p7k:Lr (2.8) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042547 9p7k:Ls (2.8) BS01 rna N/A N/A P05388 41315256
    1042548 9p7k:Lt (2.8) BS01 rna N/A GO:0002181 ... P30050 41315256
    1042549 9p7k:SA (2.8) BS01 rna N/A N/A P08865 41315256
    1042550 9p7k:SB (2.8) BS01 rna N/A N/A P61247 41315256
    1042551 9p7k:SC (2.8) BS01 rna N/A N/A P15880 41315256
    1042552 9p7k:SD (2.8) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042553 9p7k:SE (2.8) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042554 9p7k:SF (2.8) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042555 9p7k:SF (2.8) BS02 rna N/A GO:0002181 ... P46782 41315256
    1042556 9p7k:SG (2.8) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042557 9p7k:SH (2.8) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042558 9p7k:SI (2.8) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042559 9p7k:SI (2.8) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042560 9p7k:SJ (2.8) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042561 9p7k:SK (2.8) BS01 rna N/A N/A P46783 41315256
    1042562 9p7k:SL (2.8) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042563 9p7k:SL (2.8) BS02 rna N/A GO:0002181 ... P62280 41315256
    1042564 9p7k:SM (2.8) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042565 9p7k:SN (2.8) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042566 9p7k:SN (2.8) BS02 rna N/A GO:0000462 ... P62277 41315256
    1042567 9p7k:SO (2.8) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042568 9p7k:SP (2.8) BS01 rna N/A N/A P62841 41315256
    1042569 9p7k:SQ (2.8) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042570 9p7k:SR (2.8) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042571 9p7k:SS (2.8) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042572 9p7k:ST (2.8) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042573 9p7k:SU (2.8) BS01 rna N/A N/A P60866 41315256
    1042574 9p7k:SW (2.8) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042575 9p7k:SX (2.8) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042576 9p7k:SY (2.8) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042577 9p7k:SZ (2.8) BS01 rna N/A N/A P62851 41315256
    1042578 9p7k:Sa (2.8) BS01 rna N/A N/A P62854 41315256
    1042579 9p7k:Sa (2.8) BS02 ZN N/A N/A P62854 41315256
    1042580 9p7k:Sb (2.8) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042581 9p7k:Sc (2.8) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042582 9p7k:Sd (2.8) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042583 9p7k:Se (2.8) BS01 rna N/A N/A P62861 41315256
    1042584 9p7k:Se (2.8) BS02 rna N/A N/A P62861 41315256
    1042585 9p7k:Sf (2.8) BS01 rna N/A N/A P62979 41315256
    1042586 9p7k:Sg (2.8) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042587 9p7l:CF (2.92) BS01 rna N/A GO:0000049 ... P68104 41315256
    1042588 9p7l:CF (2.92) BS02 rna N/A GO:0000049 ... P68104 41315256
    1042589 9p7l:CI (2.92) BS01 rna N/A N/A P20290 41315256
    1042590 9p7l:LA (2.92) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042591 9p7l:LA (2.92) BS02 rna N/A GO:0002181 ... P62917 41315256
    1042592 9p7l:LA (2.92) BS03 MG N/A GO:0002181 ... P62917 41315256
    1042593 9p7l:LB (2.92) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042594 9p7l:LC (2.92) BS01 rna N/A N/A P36578 41315256
    1042595 9p7l:LC (2.92) BS02 rna N/A N/A P36578 41315256
    1042596 9p7l:LD (2.92) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042597 9p7l:LD (2.92) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042598 9p7l:LE (2.92) BS01 rna N/A N/A Q02878 41315256
    1042599 9p7l:LF (2.92) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042600 9p7l:LF (2.92) BS02 rna N/A GO:0000463 ... P18124 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).