SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1042601 9p7l:LG (2.92) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042602 9p7l:LG (2.92) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042603 9p7l:LH (2.92) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042604 9p7l:LI (2.92) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042605 9p7l:LI (2.92) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042606 9p7l:LI (2.92) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042607 9p7l:LJ (2.92) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042608 9p7l:LJ (2.92) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042609 9p7l:LJ (2.92) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042610 9p7l:LL (2.92) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042611 9p7l:LL (2.92) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042612 9p7l:LM (2.92) BS01 rna N/A N/A P50914 41315256
    1042613 9p7l:LN (2.92) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042614 9p7l:LN (2.92) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042615 9p7l:LN (2.92) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042616 9p7l:LO (2.92) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042617 9p7l:LP (2.92) BS01 rna N/A N/A P18621 41315256
    1042618 9p7l:LP (2.92) BS02 rna N/A N/A P18621 41315256
    1042619 9p7l:LQ (2.92) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042620 9p7l:LR (2.92) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042621 9p7l:LR (2.92) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042622 9p7l:LS (2.92) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042623 9p7l:LS (2.92) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042624 9p7l:LT (2.92) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042625 9p7l:LT (2.92) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042626 9p7l:LU (2.92) BS01 rna N/A N/A Q7Z4W8 41315256
    1042627 9p7l:LV (2.92) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042628 9p7l:LW (2.92) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042629 9p7l:LW (2.92) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042630 9p7l:LX (2.92) BS01 rna N/A N/A P62750 41315256
    1042631 9p7l:LX (2.92) BS02 rna N/A N/A P62750 41315256
    1042632 9p7l:LY (2.92) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042633 9p7l:LY (2.92) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042634 9p7l:LZ (2.92) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042635 9p7l:La (2.92) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042636 9p7l:Lb (2.92) BS01 rna N/A N/A P47914 41315256
    1042637 9p7l:Lc (2.92) BS01 rna N/A N/A P62888 41315256
    1042638 9p7l:Ld (2.92) BS01 rna N/A N/A P62899 41315256
    1042639 9p7l:Le (2.92) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042640 9p7l:Lf (2.92) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042641 9p7l:Lg (2.92) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042642 9p7l:Lg (2.92) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1042643 9p7l:Lh (2.92) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042644 9p7l:Lh (2.92) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042645 9p7l:Li (2.92) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042646 9p7l:Lj (2.92) BS01 rna N/A N/A P61927 41315256
    1042647 9p7l:Lj (2.92) BS02 rna N/A N/A P61927 41315256
    1042648 9p7l:Lj (2.92) BS03 ZN N/A N/A P61927 41315256
    1042649 9p7l:Lk (2.92) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042650 9p7l:Ll (2.92) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042651 9p7l:Ll (2.92) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042652 9p7l:Lm (2.92) BS01 rna N/A N/A P62987 41315256
    1042653 9p7l:Lm (2.92) BS02 ZN N/A N/A P62987 41315256
    1042654 9p7l:Lo (2.92) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042655 9p7l:Lo (2.92) BS02 rna N/A GO:0002181 ... P83881 41315256
    1042656 9p7l:Lo (2.92) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1042657 9p7l:Lp (2.92) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042658 9p7l:Lp (2.92) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042659 9p7l:Lr (2.92) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042660 9p7l:Ls (2.92) BS01 rna N/A N/A P05388 41315256
    1042661 9p7l:Lt (2.92) BS01 rna N/A GO:0002181 ... P30050 41315256
    1042662 9p7l:SA (2.92) BS01 rna N/A N/A P08865 41315256
    1042663 9p7l:SB (2.92) BS01 rna N/A N/A P61247 41315256
    1042664 9p7l:SC (2.92) BS01 rna N/A N/A P15880 41315256
    1042665 9p7l:SD (2.92) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042666 9p7l:SE (2.92) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042667 9p7l:SF (2.92) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042668 9p7l:SG (2.92) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042669 9p7l:SH (2.92) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042670 9p7l:SI (2.92) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042671 9p7l:SI (2.92) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042672 9p7l:SJ (2.92) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042673 9p7l:SK (2.92) BS01 rna N/A N/A P46783 41315256
    1042674 9p7l:SL (2.92) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042675 9p7l:SL (2.92) BS02 rna N/A GO:0002181 ... P62280 41315256
    1042676 9p7l:SM (2.92) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042677 9p7l:SN (2.92) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042678 9p7l:SN (2.92) BS02 rna N/A GO:0000462 ... P62277 41315256
    1042679 9p7l:SO (2.92) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042680 9p7l:SP (2.92) BS01 rna N/A N/A P62841 41315256
    1042681 9p7l:SQ (2.92) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042682 9p7l:SR (2.92) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042683 9p7l:SS (2.92) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042684 9p7l:ST (2.92) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042685 9p7l:SU (2.92) BS01 rna N/A N/A P60866 41315256
    1042686 9p7l:SV (2.92) BS01 rna N/A GO:0000447 ... P63220 41315256
    1042687 9p7l:SW (2.92) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042688 9p7l:SX (2.92) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042689 9p7l:SY (2.92) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042690 9p7l:SZ (2.92) BS01 rna N/A N/A P62851 41315256
    1042691 9p7l:Sa (2.92) BS01 rna N/A N/A P62854 41315256
    1042692 9p7l:Sa (2.92) BS02 ZN N/A N/A P62854 41315256
    1042693 9p7l:Sb (2.92) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042694 9p7l:Sc (2.92) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042695 9p7l:Sd (2.92) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042696 9p7l:Se (2.92) BS01 rna N/A N/A P62861 41315256
    1042697 9p7l:Se (2.92) BS02 rna N/A N/A P62861 41315256
    1042698 9p7l:Sf (2.92) BS01 rna N/A N/A P62979 41315256
    1042699 9p7l:Sg (2.92) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042700 9p7n:CF (2.83) BS01 rna N/A GO:0000049 ... P68104 41315256
    1042701 9p7n:CF (2.83) BS02 rna N/A GO:0000049 ... P68104 41315256
    1042702 9p7n:CI (2.83) BS01 rna N/A N/A P20290 41315256
    1042703 9p7n:LA (2.83) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042704 9p7n:LA (2.83) BS02 MG N/A GO:0002181 ... P62917 41315256
    1042705 9p7n:LB (2.83) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042706 9p7n:LC (2.83) BS01 rna N/A N/A P36578 41315256
    1042707 9p7n:LC (2.83) BS02 rna N/A N/A P36578 41315256
    1042708 9p7n:LD (2.83) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042709 9p7n:LD (2.83) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042710 9p7n:LE (2.83) BS01 rna N/A N/A Q02878 41315256
    1042711 9p7n:LF (2.83) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042712 9p7n:LF (2.83) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042713 9p7n:LG (2.83) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042714 9p7n:LG (2.83) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042715 9p7n:LH (2.83) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042716 9p7n:LI (2.83) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042717 9p7n:LI (2.83) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042718 9p7n:LI (2.83) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042719 9p7n:LJ (2.83) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042720 9p7n:LJ (2.83) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042721 9p7n:LJ (2.83) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042722 9p7n:LL (2.83) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042723 9p7n:LL (2.83) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042724 9p7n:LM (2.83) BS01 rna N/A N/A P50914 41315256
    1042725 9p7n:LN (2.83) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042726 9p7n:LN (2.83) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042727 9p7n:LN (2.83) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042728 9p7n:LO (2.83) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042729 9p7n:LP (2.83) BS01 rna N/A N/A P18621 41315256
    1042730 9p7n:LP (2.83) BS02 rna N/A N/A P18621 41315256
    1042731 9p7n:LQ (2.83) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042732 9p7n:LR (2.83) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042733 9p7n:LR (2.83) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042734 9p7n:LS (2.83) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042735 9p7n:LS (2.83) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042736 9p7n:LT (2.83) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042737 9p7n:LT (2.83) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042738 9p7n:LU (2.83) BS01 rna N/A N/A Q7Z4W8 41315256
    1042739 9p7n:LV (2.83) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042740 9p7n:LW (2.83) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042741 9p7n:LW (2.83) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1042742 9p7n:LX (2.83) BS01 rna N/A N/A P62750 41315256
    1042743 9p7n:LX (2.83) BS02 rna N/A N/A P62750 41315256
    1042744 9p7n:LY (2.83) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042745 9p7n:LY (2.83) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042746 9p7n:LZ (2.83) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042747 9p7n:La (2.83) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042748 9p7n:Lb (2.83) BS01 rna N/A N/A P47914 41315256
    1042749 9p7n:Lc (2.83) BS01 rna N/A N/A P62888 41315256
    1042750 9p7n:Ld (2.83) BS01 rna N/A N/A P62899 41315256
    1042751 9p7n:Le (2.83) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042752 9p7n:Le (2.83) BS02 MG N/A GO:0002181 ... P62910 41315256
    1042753 9p7n:Lf (2.83) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042754 9p7n:Lg (2.83) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042755 9p7n:Lh (2.83) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042756 9p7n:Lh (2.83) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042757 9p7n:Li (2.83) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042758 9p7n:Lj (2.83) BS01 rna N/A N/A P61927 41315256
    1042759 9p7n:Lj (2.83) BS02 rna N/A N/A P61927 41315256
    1042760 9p7n:Lj (2.83) BS03 ZN N/A N/A P61927 41315256
    1042761 9p7n:Lk (2.83) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042762 9p7n:Ll (2.83) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042763 9p7n:Ll (2.83) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042764 9p7n:Lm (2.83) BS01 rna N/A N/A P62987 41315256
    1042765 9p7n:Lm (2.83) BS02 ZN N/A N/A P62987 41315256
    1042766 9p7n:Lo (2.83) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042767 9p7n:Lo (2.83) BS02 ZN N/A GO:0002181 ... P83881 41315256
    1042768 9p7n:Lp (2.83) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042769 9p7n:Lp (2.83) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042770 9p7n:Lr (2.83) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042771 9p7n:Ls (2.83) BS01 rna N/A N/A P05388 41315256
    1042772 9p7n:Lt (2.83) BS01 rna N/A GO:0002181 ... P30050 41315256
    1042773 9p7n:SA (2.83) BS01 rna N/A N/A P08865 41315256
    1042774 9p7n:SB (2.83) BS01 rna N/A N/A P61247 41315256
    1042775 9p7n:SC (2.83) BS01 rna N/A N/A P15880 41315256
    1042776 9p7n:SD (2.83) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042777 9p7n:SE (2.83) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042778 9p7n:SF (2.83) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042779 9p7n:SG (2.83) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042780 9p7n:SH (2.83) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042781 9p7n:SI (2.83) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042782 9p7n:SI (2.83) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042783 9p7n:SJ (2.83) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042784 9p7n:SK (2.83) BS01 rna N/A N/A P46783 41315256
    1042785 9p7n:SL (2.83) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042786 9p7n:SL (2.83) BS02 rna N/A GO:0002181 ... P62280 41315256
    1042787 9p7n:SM (2.83) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042788 9p7n:SN (2.83) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042789 9p7n:SN (2.83) BS02 rna N/A GO:0000462 ... P62277 41315256
    1042790 9p7n:SO (2.83) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042791 9p7n:SP (2.83) BS01 rna N/A N/A P62841 41315256
    1042792 9p7n:SQ (2.83) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042793 9p7n:SR (2.83) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042794 9p7n:SS (2.83) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042795 9p7n:ST (2.83) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042796 9p7n:SU (2.83) BS01 rna N/A N/A P60866 41315256
    1042797 9p7n:SW (2.83) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042798 9p7n:SX (2.83) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042799 9p7n:SY (2.83) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042800 9p7n:SZ (2.83) BS01 rna N/A N/A P62851 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).