SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1042801 9p7n:Sa (2.83) BS01 rna N/A N/A P62854 41315256
    1042802 9p7n:Sa (2.83) BS02 ZN N/A N/A P62854 41315256
    1042803 9p7n:Sb (2.83) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042804 9p7n:Sc (2.83) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042805 9p7n:Sd (2.83) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042806 9p7n:Se (2.83) BS01 rna N/A N/A P62861 41315256
    1042807 9p7n:Se (2.83) BS02 rna N/A N/A P62861 41315256
    1042808 9p7n:Sf (2.83) BS01 rna N/A N/A P62979 41315256
    1042809 9p7n:Sg (2.83) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042810 9p7o:CF (2.65) BS01 rna N/A GO:0000049 ... P68104 41315256
    1042811 9p7o:CF (2.65) BS02 rna N/A GO:0000049 ... P68104 41315256
    1042812 9p7o:CI (2.65) BS01 rna N/A N/A P20290 41315256
    1042813 9p7o:LA (2.65) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042814 9p7o:LA (2.65) BS02 MG N/A GO:0002181 ... P62917 41315256
    1042815 9p7o:LB (2.65) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042816 9p7o:LC (2.65) BS01 rna N/A N/A P36578 41315256
    1042817 9p7o:LC (2.65) BS02 rna N/A N/A P36578 41315256
    1042818 9p7o:LD (2.65) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042819 9p7o:LD (2.65) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042820 9p7o:LE (2.65) BS01 rna N/A N/A Q02878 41315256
    1042821 9p7o:LF (2.65) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042822 9p7o:LF (2.65) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042823 9p7o:LG (2.65) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042824 9p7o:LG (2.65) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042825 9p7o:LH (2.65) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042826 9p7o:LI (2.65) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042827 9p7o:LI (2.65) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042828 9p7o:LI (2.65) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042829 9p7o:LJ (2.65) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042830 9p7o:LJ (2.65) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042831 9p7o:LJ (2.65) BS03 rna N/A GO:0000027 ... P62913 41315256
    1042832 9p7o:LL (2.65) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042833 9p7o:LL (2.65) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042834 9p7o:LM (2.65) BS01 rna N/A N/A P50914 41315256
    1042835 9p7o:LN (2.65) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042836 9p7o:LN (2.65) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042837 9p7o:LN (2.65) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042838 9p7o:LO (2.65) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042839 9p7o:LP (2.65) BS01 rna N/A N/A P18621 41315256
    1042840 9p7o:LP (2.65) BS02 rna N/A N/A P18621 41315256
    1042841 9p7o:LQ (2.65) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042842 9p7o:LR (2.65) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042843 9p7o:LR (2.65) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042844 9p7o:LS (2.65) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042845 9p7o:LS (2.65) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042846 9p7o:LT (2.65) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042847 9p7o:LT (2.65) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042848 9p7o:LU (2.65) BS01 rna N/A N/A Q7Z4W8 41315256
    1042849 9p7o:LV (2.65) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042850 9p7o:LW (2.65) BS01 rna N/A N/A A0A994J4A5 41315256
    1042851 9p7o:LW (2.65) BS02 rna N/A N/A A0A994J4A5 41315256
    1042852 9p7o:LX (2.65) BS01 rna N/A N/A P62750 41315256
    1042853 9p7o:LX (2.65) BS02 rna N/A N/A P62750 41315256
    1042854 9p7o:LY (2.65) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042855 9p7o:LY (2.65) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042856 9p7o:LZ (2.65) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042857 9p7o:La (2.65) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042858 9p7o:Lb (2.65) BS01 rna N/A N/A P47914 41315256
    1042859 9p7o:Lc (2.65) BS01 rna N/A N/A P62888 41315256
    1042860 9p7o:Ld (2.65) BS01 rna N/A N/A P62899 41315256
    1042861 9p7o:Le (2.65) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042862 9p7o:Le (2.65) BS02 MG N/A GO:0002181 ... P62910 41315256
    1042863 9p7o:Lf (2.65) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042864 9p7o:Lg (2.65) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042865 9p7o:Lg (2.65) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1042866 9p7o:Lh (2.65) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042867 9p7o:Lh (2.65) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042868 9p7o:Li (2.65) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042869 9p7o:Lj (2.65) BS01 rna N/A N/A P61927 41315256
    1042870 9p7o:Lj (2.65) BS02 rna N/A N/A P61927 41315256
    1042871 9p7o:Lj (2.65) BS03 ZN N/A N/A P61927 41315256
    1042872 9p7o:Lk (2.65) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042873 9p7o:Ll (2.65) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042874 9p7o:Ll (2.65) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042875 9p7o:Lm (2.65) BS01 rna N/A N/A P62987 41315256
    1042876 9p7o:Lm (2.65) BS02 ZN N/A N/A P62987 41315256
    1042877 9p7o:Lo (2.65) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042878 9p7o:Lo (2.65) BS02 ZN N/A GO:0002181 ... P83881 41315256
    1042879 9p7o:Lp (2.65) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042880 9p7o:Lp (2.65) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042881 9p7o:Lr (2.65) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042882 9p7o:Ls (2.65) BS01 rna N/A N/A P05388 41315256
    1042883 9p7o:Lt (2.65) BS01 rna N/A N/A P30050 41315256
    1042884 9p7o:SA (2.65) BS01 rna N/A N/A P08865 41315256
    1042885 9p7o:SB (2.65) BS01 rna N/A N/A P61247 41315256
    1042886 9p7o:SC (2.65) BS01 rna N/A N/A P15880 41315256
    1042887 9p7o:SD (2.65) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042888 9p7o:SE (2.65) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042889 9p7o:SF (2.65) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042890 9p7o:SG (2.65) BS01 rna N/A GO:0002181 ... P62753 41315256
    1042891 9p7o:SH (2.65) BS01 rna N/A GO:0002181 ... P62081 41315256
    1042892 9p7o:SI (2.65) BS01 rna N/A GO:0002181 ... P62241 41315256
    1042893 9p7o:SI (2.65) BS02 rna N/A GO:0002181 ... P62241 41315256
    1042894 9p7o:SJ (2.65) BS01 rna N/A GO:0002181 ... P46781 41315256
    1042895 9p7o:SK (2.65) BS01 rna N/A N/A P46783 41315256
    1042896 9p7o:SL (2.65) BS01 rna N/A GO:0002181 ... P62280 41315256
    1042897 9p7o:SL (2.65) BS02 rna N/A GO:0002181 ... P62280 41315256
    1042898 9p7o:SM (2.65) BS01 rna N/A GO:0002181 ... P25398 41315256
    1042899 9p7o:SN (2.65) BS01 rna N/A GO:0000462 ... P62277 41315256
    1042900 9p7o:SO (2.65) BS01 rna N/A GO:0000028 ... P62263 41315256
    1042901 9p7o:SP (2.65) BS01 rna N/A N/A P62841 41315256
    1042902 9p7o:SQ (2.65) BS01 rna N/A GO:0000462 ... P62249 41315256
    1042903 9p7o:SR (2.65) BS01 rna N/A GO:0002181 ... P08708 41315256
    1042904 9p7o:SS (2.65) BS01 rna N/A GO:0002181 ... P62269 41315256
    1042905 9p7o:ST (2.65) BS01 rna N/A GO:0000028 ... P39019 41315256
    1042906 9p7o:SU (2.65) BS01 rna N/A N/A P60866 41315256
    1042907 9p7o:SW (2.65) BS01 rna N/A GO:0002181 ... P62244 41315256
    1042908 9p7o:SX (2.65) BS01 rna N/A GO:0002181 ... P62266 41315256
    1042909 9p7o:SY (2.65) BS01 rna N/A GO:0002181 ... P62847 41315256
    1042910 9p7o:SZ (2.65) BS01 rna N/A N/A P62851 41315256
    1042911 9p7o:SZ (2.65) BS02 rna N/A N/A P62851 41315256
    1042912 9p7o:Sa (2.65) BS01 rna N/A N/A P62854 41315256
    1042913 9p7o:Sa (2.65) BS02 ZN N/A N/A P62854 41315256
    1042914 9p7o:Sb (2.65) BS01 rna N/A GO:0002181 ... P42677 41315256
    1042915 9p7o:Sc (2.65) BS01 rna N/A GO:0000028 ... P62857 41315256
    1042916 9p7o:Sd (2.65) BS01 rna N/A GO:0002181 ... P62273 41315256
    1042917 9p7o:Se (2.65) BS01 rna N/A N/A P62861 41315256
    1042918 9p7o:Sf (2.65) BS01 rna N/A N/A P62979 41315256
    1042919 9p7o:Sg (2.65) BS01 rna N/A GO:0001891 ... P63244 41315256
    1042920 9p7w:CI (2.93) BS01 rna N/A N/A P20290 41315256
    1042921 9p7w:LA (2.93) BS01 rna N/A GO:0002181 ... P62917 41315256
    1042922 9p7w:LA (2.93) BS02 MG N/A GO:0002181 ... P62917 41315256
    1042923 9p7w:LB (2.93) BS01 rna N/A GO:0002181 ... P39023 41315256
    1042924 9p7w:LC (2.93) BS01 rna N/A N/A P36578 41315256
    1042925 9p7w:LC (2.93) BS02 rna N/A N/A P36578 41315256
    1042926 9p7w:LC (2.93) BS03 SPD N/A N/A P36578 41315256
    1042927 9p7w:LD (2.93) BS01 rna N/A GO:0000027 ... P46777 41315256
    1042928 9p7w:LD (2.93) BS02 rna N/A GO:0000027 ... P46777 41315256
    1042929 9p7w:LE (2.93) BS01 rna N/A N/A Q02878 41315256
    1042930 9p7w:LF (2.93) BS01 rna N/A GO:0000463 ... P18124 41315256
    1042931 9p7w:LF (2.93) BS02 rna N/A GO:0000463 ... P18124 41315256
    1042932 9p7w:LG (2.93) BS01 rna N/A GO:0000470 ... P62424 41315256
    1042933 9p7w:LG (2.93) BS02 rna N/A GO:0000470 ... P62424 41315256
    1042934 9p7w:LH (2.93) BS01 rna N/A GO:0002181 ... P32969 41315256
    1042935 9p7w:LI (2.93) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1042936 9p7w:LI (2.93) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1042937 9p7w:LI (2.93) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1042938 9p7w:LJ (2.93) BS01 rna N/A GO:0000027 ... P62913 41315256
    1042939 9p7w:LJ (2.93) BS02 rna N/A GO:0000027 ... P62913 41315256
    1042940 9p7w:LL (2.93) BS01 rna N/A GO:0002181 ... P26373 41315256
    1042941 9p7w:LL (2.93) BS02 rna N/A GO:0002181 ... P26373 41315256
    1042942 9p7w:LM (2.93) BS01 rna N/A N/A P50914 41315256
    1042943 9p7w:LN (2.93) BS01 rna N/A GO:0002181 ... P61313 41315256
    1042944 9p7w:LN (2.93) BS02 rna N/A GO:0002181 ... P61313 41315256
    1042945 9p7w:LN (2.93) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1042946 9p7w:LO (2.93) BS01 rna N/A GO:0002181 ... P40429 41315256
    1042947 9p7w:LP (2.93) BS01 rna N/A N/A P18621 41315256
    1042948 9p7w:LP (2.93) BS02 rna N/A N/A P18621 41315256
    1042949 9p7w:LQ (2.93) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1042950 9p7w:LR (2.93) BS01 rna N/A GO:0002181 ... P84098 41315256
    1042951 9p7w:LR (2.93) BS02 rna N/A GO:0002181 ... P84098 41315256
    1042952 9p7w:LS (2.93) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1042953 9p7w:LS (2.93) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1042954 9p7w:LT (2.93) BS01 rna N/A GO:0001650 ... P46778 41315256
    1042955 9p7w:LT (2.93) BS02 rna N/A GO:0001650 ... P46778 41315256
    1042956 9p7w:LU (2.93) BS01 rna N/A N/A Q7Z4W8 41315256
    1042957 9p7w:LV (2.93) BS01 rna N/A GO:0000122 ... P62829 41315256
    1042958 9p7w:LV (2.93) BS02 rna N/A GO:0000122 ... P62829 41315256
    1042959 9p7w:LW (2.93) BS01 rna N/A N/A A0A994J4A5 41315256
    1042960 9p7w:LW (2.93) BS02 rna N/A N/A A0A994J4A5 41315256
    1042961 9p7w:LX (2.93) BS01 rna N/A N/A P62750 41315256
    1042962 9p7w:LX (2.93) BS02 rna N/A N/A P62750 41315256
    1042963 9p7w:LY (2.93) BS01 rna N/A GO:0002181 ... P61254 41315256
    1042964 9p7w:LY (2.93) BS02 rna N/A GO:0002181 ... P61254 41315256
    1042965 9p7w:LZ (2.93) BS01 rna N/A GO:0002181 ... P61353 41315256
    1042966 9p7w:La (2.93) BS01 rna N/A GO:0002181 ... P46776 41315256
    1042967 9p7w:Lb (2.93) BS01 rna N/A N/A P47914 41315256
    1042968 9p7w:Lc (2.93) BS01 rna N/A N/A P62888 41315256
    1042969 9p7w:Ld (2.93) BS01 rna N/A N/A P62899 41315256
    1042970 9p7w:Le (2.93) BS01 rna N/A GO:0002181 ... P62910 41315256
    1042971 9p7w:Le (2.93) BS02 MG N/A GO:0002181 ... P62910 41315256
    1042972 9p7w:Lf (2.93) BS01 rna N/A GO:0002181 ... P18077 41315256
    1042973 9p7w:Lg (2.93) BS01 rna N/A GO:0002181 ... P49207 41315256
    1042974 9p7w:Lh (2.93) BS01 rna N/A GO:0000463 ... P42766 41315256
    1042975 9p7w:Lh (2.93) BS02 rna N/A GO:0000463 ... P42766 41315256
    1042976 9p7w:Li (2.93) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1042977 9p7w:Lj (2.93) BS01 rna N/A N/A P61927 41315256
    1042978 9p7w:Lj (2.93) BS02 rna N/A N/A P61927 41315256
    1042979 9p7w:Lj (2.93) BS03 ZN N/A N/A P61927 41315256
    1042980 9p7w:Lk (2.93) BS01 rna N/A GO:0002181 ... P63173 41315256
    1042981 9p7w:Ll (2.93) BS01 rna N/A GO:0002181 ... P62891 41315256
    1042982 9p7w:Ll (2.93) BS02 rna N/A GO:0002181 ... P62891 41315256
    1042983 9p7w:Lm (2.93) BS01 rna N/A N/A P62987 41315256
    1042984 9p7w:Lm (2.93) BS02 ZN N/A N/A P62987 41315256
    1042985 9p7w:Lo (2.93) BS01 rna N/A GO:0002181 ... P83881 41315256
    1042986 9p7w:Lo (2.93) BS02 rna N/A GO:0002181 ... P83881 41315256
    1042987 9p7w:Lo (2.93) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1042988 9p7w:Lp (2.93) BS01 rna N/A GO:0002181 ... P61513 41315256
    1042989 9p7w:Lp (2.93) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1042990 9p7w:Lr (2.93) BS01 rna N/A GO:0002181 ... P46779 41315256
    1042991 9p7w:Ls (2.93) BS01 rna N/A N/A P05388 41315256
    1042992 9p7w:Lt (2.93) BS01 rna N/A N/A P30050 41315256
    1042993 9p7w:SA (2.93) BS01 rna N/A N/A P08865 41315256
    1042994 9p7w:SB (2.93) BS01 rna N/A N/A P61247 41315256
    1042995 9p7w:SC (2.93) BS01 rna N/A N/A P15880 41315256
    1042996 9p7w:SD (2.93) BS01 rna N/A GO:0001228 ... P23396 41315256
    1042997 9p7w:SE (2.93) BS01 rna N/A GO:0002181 ... P62701 41315256
    1042998 9p7w:SF (2.93) BS01 rna N/A GO:0002181 ... P46782 41315256
    1042999 9p7w:SG (2.93) BS01 rna N/A GO:0002181 ... P62753 41315256
    1043000 9p7w:SH (2.93) BS01 rna N/A GO:0002181 ... P62081 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).