SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1043001 9p7w:SI (2.93) BS01 rna N/A GO:0002181 ... P62241 41315256
    1043002 9p7w:SI (2.93) BS02 rna N/A GO:0002181 ... P62241 41315256
    1043003 9p7w:SJ (2.93) BS01 rna N/A GO:0002181 ... P46781 41315256
    1043004 9p7w:SK (2.93) BS01 rna N/A N/A P46783 41315256
    1043005 9p7w:SL (2.93) BS01 rna N/A GO:0002181 ... P62280 41315256
    1043006 9p7w:SM (2.93) BS01 rna N/A GO:0002181 ... P25398 41315256
    1043007 9p7w:SN (2.93) BS01 rna N/A GO:0000462 ... P62277 41315256
    1043008 9p7w:SN (2.93) BS02 rna N/A GO:0000462 ... P62277 41315256
    1043009 9p7w:SO (2.93) BS01 rna N/A GO:0000028 ... P62263 41315256
    1043010 9p7w:SP (2.93) BS01 rna N/A N/A P62841 41315256
    1043011 9p7w:SP (2.93) BS02 rna N/A N/A P62841 41315256
    1043012 9p7w:SQ (2.93) BS01 rna N/A GO:0000462 ... P62249 41315256
    1043013 9p7w:SR (2.93) BS01 rna N/A GO:0002181 ... P08708 41315256
    1043014 9p7w:SS (2.93) BS01 rna N/A GO:0002181 ... P62269 41315256
    1043015 9p7w:SS (2.93) BS02 MG N/A GO:0002181 ... P62269 41315256
    1043016 9p7w:ST (2.93) BS01 rna N/A GO:0000028 ... P39019 41315256
    1043017 9p7w:SU (2.93) BS01 rna N/A N/A P60866 41315256
    1043018 9p7w:SW (2.93) BS01 rna N/A GO:0002181 ... P62244 41315256
    1043019 9p7w:SX (2.93) BS01 rna N/A GO:0002181 ... P62266 41315256
    1043020 9p7w:SY (2.93) BS01 rna N/A GO:0002181 ... P62847 41315256
    1043021 9p7w:SZ (2.93) BS01 rna N/A N/A P62851 41315256
    1043022 9p7w:Sa (2.93) BS01 rna N/A N/A P62854 41315256
    1043023 9p7w:Sa (2.93) BS02 ZN N/A N/A P62854 41315256
    1043024 9p7w:Sb (2.93) BS01 rna N/A GO:0002181 ... P42677 41315256
    1043025 9p7w:Sc (2.93) BS01 rna N/A GO:0000028 ... P62857 41315256
    1043026 9p7w:Sd (2.93) BS01 rna N/A GO:0002181 ... P62273 41315256
    1043027 9p7w:Se (2.93) BS01 rna N/A N/A P62861 41315256
    1043028 9p7w:Sf (2.93) BS01 rna N/A N/A P62979 41315256
    1043029 9p7w:Sg (2.93) BS01 rna N/A GO:0001891 ... P63244 41315256
    1043030 9p7x:CI (2.83) BS01 rna N/A N/A P20290 41315256
    1043031 9p7x:LA (2.83) BS01 rna N/A GO:0002181 ... P62917 41315256
    1043032 9p7x:LA (2.83) BS02 MG N/A GO:0002181 ... P62917 41315256
    1043033 9p7x:LB (2.83) BS01 rna N/A GO:0002181 ... P39023 41315256
    1043034 9p7x:LC (2.83) BS01 rna N/A N/A P36578 41315256
    1043035 9p7x:LC (2.83) BS02 rna N/A N/A P36578 41315256
    1043036 9p7x:LC (2.83) BS03 SPD N/A N/A P36578 41315256
    1043037 9p7x:LD (2.83) BS01 rna N/A GO:0000027 ... P46777 41315256
    1043038 9p7x:LD (2.83) BS02 rna N/A GO:0000027 ... P46777 41315256
    1043039 9p7x:LE (2.83) BS01 rna N/A N/A Q02878 41315256
    1043040 9p7x:LF (2.83) BS01 rna N/A GO:0000463 ... P18124 41315256
    1043041 9p7x:LF (2.83) BS02 rna N/A GO:0000463 ... P18124 41315256
    1043042 9p7x:LG (2.83) BS01 rna N/A GO:0000470 ... P62424 41315256
    1043043 9p7x:LG (2.83) BS02 rna N/A GO:0000470 ... P62424 41315256
    1043044 9p7x:LH (2.83) BS01 rna N/A GO:0002181 ... P32969 41315256
    1043045 9p7x:LI (2.83) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1043046 9p7x:LI (2.83) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1043047 9p7x:LI (2.83) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1043048 9p7x:LJ (2.83) BS01 rna N/A GO:0000027 ... P62913 41315256
    1043049 9p7x:LJ (2.83) BS02 rna N/A GO:0000027 ... P62913 41315256
    1043050 9p7x:LJ (2.83) BS03 rna N/A GO:0000027 ... P62913 41315256
    1043051 9p7x:LL (2.83) BS01 rna N/A GO:0002181 ... P26373 41315256
    1043052 9p7x:LL (2.83) BS02 rna N/A GO:0002181 ... P26373 41315256
    1043053 9p7x:LM (2.83) BS01 rna N/A N/A P50914 41315256
    1043054 9p7x:LN (2.83) BS01 rna N/A GO:0002181 ... P61313 41315256
    1043055 9p7x:LN (2.83) BS02 rna N/A GO:0002181 ... P61313 41315256
    1043056 9p7x:LN (2.83) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1043057 9p7x:LO (2.83) BS01 rna N/A GO:0002181 ... P40429 41315256
    1043058 9p7x:LP (2.83) BS01 rna N/A N/A P18621 41315256
    1043059 9p7x:LP (2.83) BS02 rna N/A N/A P18621 41315256
    1043060 9p7x:LQ (2.83) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1043061 9p7x:LR (2.83) BS01 rna N/A GO:0002181 ... P84098 41315256
    1043062 9p7x:LR (2.83) BS02 rna N/A GO:0002181 ... P84098 41315256
    1043063 9p7x:LS (2.83) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1043064 9p7x:LS (2.83) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1043065 9p7x:LT (2.83) BS01 rna N/A GO:0001650 ... P46778 41315256
    1043066 9p7x:LT (2.83) BS02 rna N/A GO:0001650 ... P46778 41315256
    1043067 9p7x:LU (2.83) BS01 rna N/A N/A Q7Z4W8 41315256
    1043068 9p7x:LV (2.83) BS01 rna N/A GO:0000122 ... P62829 41315256
    1043069 9p7x:LV (2.83) BS02 rna N/A GO:0000122 ... P62829 41315256
    1043070 9p7x:LW (2.83) BS01 rna N/A N/A A0A994J4A5 41315256
    1043071 9p7x:LW (2.83) BS02 rna N/A N/A A0A994J4A5 41315256
    1043072 9p7x:LX (2.83) BS01 rna N/A N/A P62750 41315256
    1043073 9p7x:LX (2.83) BS02 rna N/A N/A P62750 41315256
    1043074 9p7x:LY (2.83) BS01 rna N/A GO:0002181 ... P61254 41315256
    1043075 9p7x:LY (2.83) BS02 rna N/A GO:0002181 ... P61254 41315256
    1043076 9p7x:LZ (2.83) BS01 rna N/A GO:0002181 ... P61353 41315256
    1043077 9p7x:La (2.83) BS01 rna N/A GO:0002181 ... P46776 41315256
    1043078 9p7x:Lb (2.83) BS01 rna N/A N/A P47914 41315256
    1043079 9p7x:Lc (2.83) BS01 rna N/A N/A P62888 41315256
    1043080 9p7x:Ld (2.83) BS01 rna N/A N/A P62899 41315256
    1043081 9p7x:Le (2.83) BS01 rna N/A GO:0002181 ... P62910 41315256
    1043082 9p7x:Le (2.83) BS02 MG N/A GO:0002181 ... P62910 41315256
    1043083 9p7x:Lf (2.83) BS01 rna N/A GO:0002181 ... P18077 41315256
    1043084 9p7x:Lg (2.83) BS01 rna N/A GO:0002181 ... P49207 41315256
    1043085 9p7x:Lh (2.83) BS01 rna N/A GO:0000463 ... P42766 41315256
    1043086 9p7x:Lh (2.83) BS02 rna N/A GO:0000463 ... P42766 41315256
    1043087 9p7x:Li (2.83) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1043088 9p7x:Lj (2.83) BS01 rna N/A N/A P61927 41315256
    1043089 9p7x:Lj (2.83) BS02 rna N/A N/A P61927 41315256
    1043090 9p7x:Lj (2.83) BS03 ZN N/A N/A P61927 41315256
    1043091 9p7x:Lk (2.83) BS01 rna N/A GO:0002181 ... P63173 41315256
    1043092 9p7x:Ll (2.83) BS01 rna N/A GO:0002181 ... P62891 41315256
    1043093 9p7x:Ll (2.83) BS02 rna N/A GO:0002181 ... P62891 41315256
    1043094 9p7x:Lm (2.83) BS01 rna N/A N/A P62987 41315256
    1043095 9p7x:Lm (2.83) BS02 ZN N/A N/A P62987 41315256
    1043096 9p7x:Lo (2.83) BS01 rna N/A GO:0002181 ... P83881 41315256
    1043097 9p7x:Lo (2.83) BS02 rna N/A GO:0002181 ... P83881 41315256
    1043098 9p7x:Lo (2.83) BS03 rna N/A GO:0002181 ... P83881 41315256
    1043099 9p7x:Lo (2.83) BS04 ZN N/A GO:0002181 ... P83881 41315256
    1043100 9p7x:Lp (2.83) BS01 rna N/A GO:0002181 ... P61513 41315256
    1043101 9p7x:Lp (2.83) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1043102 9p7x:Lr (2.83) BS01 rna N/A GO:0002181 ... P46779 41315256
    1043103 9p7x:Ls (2.83) BS01 rna N/A N/A P05388 41315256
    1043104 9p7x:Lt (2.83) BS01 rna N/A N/A P30050 41315256
    1043105 9p7x:SA (2.83) BS01 rna N/A N/A P08865 41315256
    1043106 9p7x:SB (2.83) BS01 rna N/A N/A P61247 41315256
    1043107 9p7x:SC (2.83) BS01 rna N/A N/A P15880 41315256
    1043108 9p7x:SD (2.83) BS01 rna N/A GO:0001228 ... P23396 41315256
    1043109 9p7x:SE (2.83) BS01 rna N/A GO:0002181 ... P62701 41315256
    1043110 9p7x:SF (2.83) BS01 rna N/A GO:0002181 ... P46782 41315256
    1043111 9p7x:SG (2.83) BS01 rna N/A GO:0002181 ... P62753 41315256
    1043112 9p7x:SH (2.83) BS01 rna N/A GO:0002181 ... P62081 41315256
    1043113 9p7x:SI (2.83) BS01 rna N/A GO:0002181 ... P62241 41315256
    1043114 9p7x:SI (2.83) BS02 rna N/A GO:0002181 ... P62241 41315256
    1043115 9p7x:SJ (2.83) BS01 rna N/A GO:0002181 ... P46781 41315256
    1043116 9p7x:SK (2.83) BS01 rna N/A N/A P46783 41315256
    1043117 9p7x:SL (2.83) BS01 rna N/A GO:0002181 ... P62280 41315256
    1043118 9p7x:SM (2.83) BS01 rna N/A GO:0002181 ... P25398 41315256
    1043119 9p7x:SN (2.83) BS01 rna N/A GO:0000462 ... P62277 41315256
    1043120 9p7x:SN (2.83) BS02 rna N/A GO:0000462 ... P62277 41315256
    1043121 9p7x:SO (2.83) BS01 rna N/A GO:0000028 ... P62263 41315256
    1043122 9p7x:SP (2.83) BS01 rna N/A N/A P62841 41315256
    1043123 9p7x:SP (2.83) BS02 rna N/A N/A P62841 41315256
    1043124 9p7x:SQ (2.83) BS01 rna N/A GO:0000462 ... P62249 41315256
    1043125 9p7x:SR (2.83) BS01 rna N/A GO:0002181 ... P08708 41315256
    1043126 9p7x:SS (2.83) BS01 rna N/A GO:0002181 ... P62269 41315256
    1043127 9p7x:SS (2.83) BS02 MG N/A GO:0002181 ... P62269 41315256
    1043128 9p7x:ST (2.83) BS01 rna N/A GO:0000028 ... P39019 41315256
    1043129 9p7x:SU (2.83) BS01 rna N/A N/A P60866 41315256
    1043130 9p7x:SW (2.83) BS01 rna N/A GO:0002181 ... P62244 41315256
    1043131 9p7x:SX (2.83) BS01 rna N/A GO:0002181 ... P62266 41315256
    1043132 9p7x:SY (2.83) BS01 rna N/A GO:0002181 ... P62847 41315256
    1043133 9p7x:SZ (2.83) BS01 rna N/A N/A P62851 41315256
    1043134 9p7x:SZ (2.83) BS02 rna N/A N/A P62851 41315256
    1043135 9p7x:Sa (2.83) BS01 rna N/A N/A P62854 41315256
    1043136 9p7x:Sa (2.83) BS02 ZN N/A N/A P62854 41315256
    1043137 9p7x:Sb (2.83) BS01 rna N/A GO:0002181 ... P42677 41315256
    1043138 9p7x:Sc (2.83) BS01 rna N/A GO:0000028 ... P62857 41315256
    1043139 9p7x:Sd (2.83) BS01 rna N/A GO:0002181 ... P62273 41315256
    1043140 9p7x:Se (2.83) BS01 rna N/A N/A P62861 41315256
    1043141 9p7x:Sf (2.83) BS01 rna N/A N/A P62979 41315256
    1043142 9p7x:Sg (2.83) BS01 rna N/A GO:0001891 ... P63244 41315256
    1043143 9p7y:CI (2.75) BS01 rna N/A N/A P20290 41315256
    1043144 9p7y:LA (2.75) BS01 rna N/A GO:0002181 ... P62917 41315256
    1043145 9p7y:LA (2.75) BS02 MG N/A GO:0002181 ... P62917 41315256
    1043146 9p7y:LB (2.75) BS01 rna N/A GO:0002181 ... P39023 41315256
    1043147 9p7y:LC (2.75) BS01 rna N/A N/A P36578 41315256
    1043148 9p7y:LC (2.75) BS02 rna N/A N/A P36578 41315256
    1043149 9p7y:LC (2.75) BS03 SPD N/A N/A P36578 41315256
    1043150 9p7y:LD (2.75) BS01 rna N/A GO:0000027 ... P46777 41315256
    1043151 9p7y:LD (2.75) BS02 rna N/A GO:0000027 ... P46777 41315256
    1043152 9p7y:LE (2.75) BS01 rna N/A N/A Q02878 41315256
    1043153 9p7y:LF (2.75) BS01 rna N/A GO:0000463 ... P18124 41315256
    1043154 9p7y:LF (2.75) BS02 rna N/A GO:0000463 ... P18124 41315256
    1043155 9p7y:LG (2.75) BS01 rna N/A GO:0000470 ... P62424 41315256
    1043156 9p7y:LG (2.75) BS02 rna N/A GO:0000470 ... P62424 41315256
    1043157 9p7y:LH (2.75) BS01 rna N/A GO:0002181 ... P32969 41315256
    1043158 9p7y:LI (2.75) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1043159 9p7y:LI (2.75) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1043160 9p7y:LI (2.75) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1043161 9p7y:LJ (2.75) BS01 rna N/A GO:0000027 ... P62913 41315256
    1043162 9p7y:LJ (2.75) BS02 rna N/A GO:0000027 ... P62913 41315256
    1043163 9p7y:LJ (2.75) BS03 rna N/A GO:0000027 ... P62913 41315256
    1043164 9p7y:LL (2.75) BS01 rna N/A GO:0002181 ... P26373 41315256
    1043165 9p7y:LL (2.75) BS02 rna N/A GO:0002181 ... P26373 41315256
    1043166 9p7y:LM (2.75) BS01 rna N/A N/A P50914 41315256
    1043167 9p7y:LN (2.75) BS01 rna N/A GO:0002181 ... P61313 41315256
    1043168 9p7y:LN (2.75) BS02 rna N/A GO:0002181 ... P61313 41315256
    1043169 9p7y:LN (2.75) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1043170 9p7y:LO (2.75) BS01 rna N/A GO:0002181 ... P40429 41315256
    1043171 9p7y:LP (2.75) BS01 rna N/A N/A P18621 41315256
    1043172 9p7y:LP (2.75) BS02 rna N/A N/A P18621 41315256
    1043173 9p7y:LQ (2.75) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1043174 9p7y:LR (2.75) BS01 rna N/A GO:0002181 ... P84098 41315256
    1043175 9p7y:LR (2.75) BS02 rna N/A GO:0002181 ... P84098 41315256
    1043176 9p7y:LS (2.75) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1043177 9p7y:LS (2.75) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1043178 9p7y:LT (2.75) BS01 rna N/A GO:0001650 ... P46778 41315256
    1043179 9p7y:LT (2.75) BS02 rna N/A GO:0001650 ... P46778 41315256
    1043180 9p7y:LU (2.75) BS01 rna N/A N/A Q7Z4W8 41315256
    1043181 9p7y:LV (2.75) BS01 rna N/A GO:0000122 ... P62829 41315256
    1043182 9p7y:LV (2.75) BS02 rna N/A GO:0000122 ... P62829 41315256
    1043183 9p7y:LW (2.75) BS01 rna N/A N/A A0A994J4A5 41315256
    1043184 9p7y:LW (2.75) BS02 rna N/A N/A A0A994J4A5 41315256
    1043185 9p7y:LX (2.75) BS01 rna N/A N/A P62750 41315256
    1043186 9p7y:LX (2.75) BS02 rna N/A N/A P62750 41315256
    1043187 9p7y:LY (2.75) BS01 rna N/A GO:0002181 ... P61254 41315256
    1043188 9p7y:LY (2.75) BS02 rna N/A GO:0002181 ... P61254 41315256
    1043189 9p7y:LZ (2.75) BS01 rna N/A GO:0002181 ... P61353 41315256
    1043190 9p7y:La (2.75) BS01 rna N/A GO:0002181 ... P46776 41315256
    1043191 9p7y:Lb (2.75) BS01 rna N/A N/A P47914 41315256
    1043192 9p7y:Lc (2.75) BS01 rna N/A N/A P62888 41315256
    1043193 9p7y:Ld (2.75) BS01 rna N/A N/A P62899 41315256
    1043194 9p7y:Le (2.75) BS01 rna N/A GO:0002181 ... P62910 41315256
    1043195 9p7y:Le (2.75) BS02 MG N/A GO:0002181 ... P62910 41315256
    1043196 9p7y:Lf (2.75) BS01 rna N/A GO:0002181 ... P18077 41315256
    1043197 9p7y:Lg (2.75) BS01 rna N/A GO:0002181 ... P49207 41315256
    1043198 9p7y:Lh (2.75) BS01 rna N/A GO:0000463 ... P42766 41315256
    1043199 9p7y:Lh (2.75) BS02 rna N/A GO:0000463 ... P42766 41315256
    1043200 9p7y:Li (2.75) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).