SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1043201 9p7y:Lj (2.75) BS01 rna N/A N/A P61927 41315256
    1043202 9p7y:Lj (2.75) BS02 rna N/A N/A P61927 41315256
    1043203 9p7y:Lj (2.75) BS03 ZN N/A N/A P61927 41315256
    1043204 9p7y:Lk (2.75) BS01 rna N/A GO:0002181 ... P63173 41315256
    1043205 9p7y:Ll (2.75) BS01 rna N/A GO:0002181 ... P62891 41315256
    1043206 9p7y:Ll (2.75) BS02 rna N/A GO:0002181 ... P62891 41315256
    1043207 9p7y:Lm (2.75) BS01 rna N/A N/A P62987 41315256
    1043208 9p7y:Lm (2.75) BS02 ZN N/A N/A P62987 41315256
    1043209 9p7y:Lo (2.75) BS01 rna N/A GO:0002181 ... P83881 41315256
    1043210 9p7y:Lo (2.75) BS02 rna N/A GO:0002181 ... P83881 41315256
    1043211 9p7y:Lo (2.75) BS03 rna N/A GO:0002181 ... P83881 41315256
    1043212 9p7y:Lo (2.75) BS04 ZN N/A GO:0002181 ... P83881 41315256
    1043213 9p7y:Lp (2.75) BS01 rna N/A GO:0002181 ... P61513 41315256
    1043214 9p7y:Lp (2.75) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1043215 9p7y:Lr (2.75) BS01 rna N/A GO:0002181 ... P46779 41315256
    1043216 9p7y:Ls (2.75) BS01 rna N/A N/A P05388 41315256
    1043217 9p7y:Lt (2.75) BS01 rna N/A N/A P30050 41315256
    1043218 9p7y:SA (2.75) BS01 rna N/A N/A P08865 41315256
    1043219 9p7y:SB (2.75) BS01 rna N/A N/A P61247 41315256
    1043220 9p7y:SC (2.75) BS01 rna N/A N/A P15880 41315256
    1043221 9p7y:SD (2.75) BS01 rna N/A GO:0001228 ... P23396 41315256
    1043222 9p7y:SE (2.75) BS01 rna N/A GO:0002181 ... P62701 41315256
    1043223 9p7y:SF (2.75) BS01 rna N/A GO:0002181 ... P46782 41315256
    1043224 9p7y:SF (2.75) BS02 rna N/A GO:0002181 ... P46782 41315256
    1043225 9p7y:SG (2.75) BS01 rna N/A GO:0002181 ... P62753 41315256
    1043226 9p7y:SH (2.75) BS01 rna N/A GO:0002181 ... P62081 41315256
    1043227 9p7y:SI (2.75) BS01 rna N/A GO:0002181 ... P62241 41315256
    1043228 9p7y:SI (2.75) BS02 rna N/A GO:0002181 ... P62241 41315256
    1043229 9p7y:SJ (2.75) BS01 rna N/A GO:0002181 ... P46781 41315256
    1043230 9p7y:SK (2.75) BS01 rna N/A N/A P46783 41315256
    1043231 9p7y:SL (2.75) BS01 rna N/A GO:0002181 ... P62280 41315256
    1043232 9p7y:SM (2.75) BS01 rna N/A GO:0002181 ... P25398 41315256
    1043233 9p7y:SN (2.75) BS01 rna N/A GO:0000462 ... P62277 41315256
    1043234 9p7y:SO (2.75) BS01 rna N/A GO:0000028 ... P62263 41315256
    1043235 9p7y:SP (2.75) BS01 rna N/A N/A P62841 41315256
    1043236 9p7y:SP (2.75) BS02 rna N/A N/A P62841 41315256
    1043237 9p7y:SQ (2.75) BS01 rna N/A GO:0000462 ... P62249 41315256
    1043238 9p7y:SR (2.75) BS01 rna N/A GO:0002181 ... P08708 41315256
    1043239 9p7y:SS (2.75) BS01 rna N/A GO:0002181 ... P62269 41315256
    1043240 9p7y:ST (2.75) BS01 rna N/A GO:0000028 ... P39019 41315256
    1043241 9p7y:SU (2.75) BS01 rna N/A N/A P60866 41315256
    1043242 9p7y:SW (2.75) BS01 rna N/A GO:0002181 ... P62244 41315256
    1043243 9p7y:SX (2.75) BS01 rna N/A GO:0002181 ... P62266 41315256
    1043244 9p7y:SY (2.75) BS01 rna N/A GO:0002181 ... P62847 41315256
    1043245 9p7y:SZ (2.75) BS01 rna N/A N/A P62851 41315256
    1043246 9p7y:Sa (2.75) BS01 rna N/A N/A P62854 41315256
    1043247 9p7y:Sa (2.75) BS02 ZN N/A N/A P62854 41315256
    1043248 9p7y:Sb (2.75) BS01 rna N/A GO:0002181 ... P42677 41315256
    1043249 9p7y:Sc (2.75) BS01 rna N/A GO:0000028 ... P62857 41315256
    1043250 9p7y:Sd (2.75) BS01 rna N/A GO:0002181 ... P62273 41315256
    1043251 9p7y:Se (2.75) BS01 rna N/A N/A P62861 41315256
    1043252 9p7y:Sf (2.75) BS01 rna N/A N/A P62979 41315256
    1043253 9p7y:Sg (2.75) BS01 rna N/A GO:0001891 ... P63244 41315256
    1043254 9p7z:R (2.1) BS01 peptide N/A N/A P30989 41813894
    1043255 9p80:R (2.3) BS01 peptide N/A N/A P30989 41813894
    1043256 9p81:A (2.6) BS01 GTP N/A N/A P63096 41813894
    1043257 9p81:R (2.6) BS01 peptide N/A N/A P30989 41813894
    1043258 9p82:A (2.4) BS01 MG N/A N/A P63096 41813894
    1043259 9p82:A (2.4) BS02 GTP N/A N/A P63096 41813894
    1043260 9p82:R (2.4) BS01 peptide N/A N/A P30989 41813894
    1043261 9p83:A (3.2) BS01 GTP N/A N/A P63096 41813894
    1043262 9p83:R (3.2) BS01 peptide N/A N/A P30989 41813894
    1043263 9p84:A (2.7) BS01 GTP N/A N/A P63096 41813894
    1043264 9p84:R (2.7) BS01 peptide N/A N/A P30989 41813894
    1043265 9p85:A (3.0) BS01 MG N/A N/A P63096 41813894
    1043266 9p85:A (3.0) BS02 GTP N/A N/A P63096 41813894
    1043267 9p85:R (3.0) BS01 peptide N/A N/A P30989 41813894
    1043268 9p86:R (2.9) BS01 peptide N/A N/A P30989 41813894
    1043269 9p87:R (2.8) BS01 peptide N/A N/A P30989 41813894
    1043270 9p88:R (2.9) BS01 peptide N/A N/A P30989 41813894
    1043271 9p89:A (3.9) BS01 GTP N/A N/A P29992 41813894
    1043272 9p89:R (3.9) BS01 peptide N/A N/A P30989 41813894
    1043273 9p8a:A (3.7) BS01 GTP N/A N/A P29992 41813894
    1043274 9p8b:CF (2.48) BS01 rna N/A GO:0000049 ... P68104 41315256
    1043275 9p8b:CF (2.48) BS02 rna N/A GO:0000049 ... P68104 41315256
    1043276 9p8b:CI (2.48) BS01 rna N/A N/A P20290 41315256
    1043277 9p8b:LA (2.48) BS01 rna N/A GO:0002181 ... P62917 41315256
    1043278 9p8b:LA (2.48) BS02 MG N/A GO:0002181 ... P62917 41315256
    1043279 9p8b:LB (2.48) BS01 rna N/A GO:0002181 ... P39023 41315256
    1043280 9p8b:LC (2.48) BS01 rna N/A N/A P36578 41315256
    1043281 9p8b:LC (2.48) BS02 rna N/A N/A P36578 41315256
    1043282 9p8b:LD (2.48) BS01 rna N/A GO:0000027 ... P46777 41315256
    1043283 9p8b:LD (2.48) BS02 rna N/A GO:0000027 ... P46777 41315256
    1043284 9p8b:LE (2.48) BS01 rna N/A N/A Q02878 41315256
    1043285 9p8b:LF (2.48) BS01 rna N/A GO:0000463 ... P18124 41315256
    1043286 9p8b:LF (2.48) BS02 rna N/A GO:0000463 ... P18124 41315256
    1043287 9p8b:LG (2.48) BS01 rna N/A GO:0000470 ... P62424 41315256
    1043288 9p8b:LG (2.48) BS02 rna N/A GO:0000470 ... P62424 41315256
    1043289 9p8b:LH (2.48) BS01 rna N/A GO:0002181 ... P32969 41315256
    1043290 9p8b:LI (2.48) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1043291 9p8b:LI (2.48) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1043292 9p8b:LI (2.48) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1043293 9p8b:LJ (2.48) BS01 rna N/A GO:0000027 ... P62913 41315256
    1043294 9p8b:LJ (2.48) BS02 rna N/A GO:0000027 ... P62913 41315256
    1043295 9p8b:LJ (2.48) BS03 rna N/A GO:0000027 ... P62913 41315256
    1043296 9p8b:LL (2.48) BS01 rna N/A GO:0002181 ... P26373 41315256
    1043297 9p8b:LL (2.48) BS02 rna N/A GO:0002181 ... P26373 41315256
    1043298 9p8b:LM (2.48) BS01 rna N/A N/A P50914 41315256
    1043299 9p8b:LN (2.48) BS01 rna N/A GO:0002181 ... P61313 41315256
    1043300 9p8b:LN (2.48) BS02 rna N/A GO:0002181 ... P61313 41315256
    1043301 9p8b:LN (2.48) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1043302 9p8b:LO (2.48) BS01 rna N/A GO:0002181 ... P40429 41315256
    1043303 9p8b:LP (2.48) BS01 rna N/A N/A P18621 41315256
    1043304 9p8b:LP (2.48) BS02 rna N/A N/A P18621 41315256
    1043305 9p8b:LQ (2.48) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1043306 9p8b:LR (2.48) BS01 rna N/A GO:0002181 ... P84098 41315256
    1043307 9p8b:LR (2.48) BS02 rna N/A GO:0002181 ... P84098 41315256
    1043308 9p8b:LS (2.48) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1043309 9p8b:LS (2.48) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1043310 9p8b:LT (2.48) BS01 rna N/A GO:0001650 ... P46778 41315256
    1043311 9p8b:LT (2.48) BS02 rna N/A GO:0001650 ... P46778 41315256
    1043312 9p8b:LU (2.48) BS01 rna N/A N/A Q7Z4W8 41315256
    1043313 9p8b:LV (2.48) BS01 rna N/A GO:0000122 ... P62829 41315256
    1043314 9p8b:LW (2.48) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043315 9p8b:LW (2.48) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043316 9p8b:LX (2.48) BS01 rna N/A N/A P62750 41315256
    1043317 9p8b:LX (2.48) BS02 rna N/A N/A P62750 41315256
    1043318 9p8b:LY (2.48) BS01 rna N/A GO:0002181 ... P61254 41315256
    1043319 9p8b:LY (2.48) BS02 rna N/A GO:0002181 ... P61254 41315256
    1043320 9p8b:LZ (2.48) BS01 rna N/A GO:0002181 ... P61353 41315256
    1043321 9p8b:La (2.48) BS01 rna N/A GO:0002181 ... P46776 41315256
    1043322 9p8b:Lb (2.48) BS01 rna N/A N/A P47914 41315256
    1043323 9p8b:Lc (2.48) BS01 rna N/A N/A P62888 41315256
    1043324 9p8b:Ld (2.48) BS01 rna N/A N/A P62899 41315256
    1043325 9p8b:Le (2.48) BS01 rna N/A GO:0002181 ... P62910 41315256
    1043326 9p8b:Le (2.48) BS02 MG N/A GO:0002181 ... P62910 41315256
    1043327 9p8b:Lf (2.48) BS01 rna N/A GO:0002181 ... P18077 41315256
    1043328 9p8b:Lg (2.48) BS01 rna N/A GO:0002181 ... P49207 41315256
    1043329 9p8b:Lg (2.48) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1043330 9p8b:Lh (2.48) BS01 rna N/A GO:0000463 ... P42766 41315256
    1043331 9p8b:Lh (2.48) BS02 rna N/A GO:0000463 ... P42766 41315256
    1043332 9p8b:Li (2.48) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1043333 9p8b:Lj (2.48) BS01 rna N/A N/A P61927 41315256
    1043334 9p8b:Lj (2.48) BS02 rna N/A N/A P61927 41315256
    1043335 9p8b:Lj (2.48) BS03 ZN N/A N/A P61927 41315256
    1043336 9p8b:Lk (2.48) BS01 rna N/A GO:0002181 ... P63173 41315256
    1043337 9p8b:Ll (2.48) BS01 rna N/A GO:0002181 ... P62891 41315256
    1043338 9p8b:Ll (2.48) BS02 rna N/A GO:0002181 ... P62891 41315256
    1043339 9p8b:Lm (2.48) BS01 rna N/A N/A P62987 41315256
    1043340 9p8b:Lm (2.48) BS02 ZN N/A N/A P62987 41315256
    1043341 9p8b:Lo (2.48) BS01 rna N/A GO:0002181 ... P83881 41315256
    1043342 9p8b:Lo (2.48) BS02 rna N/A GO:0002181 ... P83881 41315256
    1043343 9p8b:Lo (2.48) BS03 rna N/A GO:0002181 ... P83881 41315256
    1043344 9p8b:Lo (2.48) BS04 ZN N/A GO:0002181 ... P83881 41315256
    1043345 9p8b:Lp (2.48) BS01 rna N/A GO:0002181 ... P61513 41315256
    1043346 9p8b:Lp (2.48) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1043347 9p8b:Lr (2.48) BS01 rna N/A GO:0002181 ... P46779 41315256
    1043348 9p8b:Ls (2.48) BS01 rna N/A N/A P05388 41315256
    1043349 9p8b:Lt (2.48) BS01 rna N/A GO:0002181 ... P30050 41315256
    1043350 9p8b:SA (2.48) BS01 rna N/A N/A P08865 41315256
    1043351 9p8b:SB (2.48) BS01 rna N/A N/A P61247 41315256
    1043352 9p8b:SC (2.48) BS01 rna N/A N/A P15880 41315256
    1043353 9p8b:SD (2.48) BS01 rna N/A GO:0001228 ... P23396 41315256
    1043354 9p8b:SE (2.48) BS01 rna N/A GO:0002181 ... P62701 41315256
    1043355 9p8b:SF (2.48) BS01 rna N/A GO:0002181 ... P46782 41315256
    1043356 9p8b:SF (2.48) BS02 rna N/A GO:0002181 ... P46782 41315256
    1043357 9p8b:SG (2.48) BS01 rna N/A GO:0002181 ... P62753 41315256
    1043358 9p8b:SH (2.48) BS01 rna N/A GO:0002181 ... P62081 41315256
    1043359 9p8b:SI (2.48) BS01 rna N/A GO:0002181 ... P62241 41315256
    1043360 9p8b:SI (2.48) BS02 rna N/A GO:0002181 ... P62241 41315256
    1043361 9p8b:SJ (2.48) BS01 rna N/A GO:0002181 ... P46781 41315256
    1043362 9p8b:SK (2.48) BS01 rna N/A N/A P46783 41315256
    1043363 9p8b:SL (2.48) BS01 rna N/A GO:0002181 ... P62280 41315256
    1043364 9p8b:SL (2.48) BS02 rna N/A GO:0002181 ... P62280 41315256
    1043365 9p8b:SM (2.48) BS01 rna N/A GO:0002181 ... P25398 41315256
    1043366 9p8b:SN (2.48) BS01 rna N/A GO:0000462 ... P62277 41315256
    1043367 9p8b:SN (2.48) BS02 rna N/A GO:0000462 ... P62277 41315256
    1043368 9p8b:SO (2.48) BS01 rna N/A GO:0000028 ... P62263 41315256
    1043369 9p8b:SP (2.48) BS01 rna N/A N/A P62841 41315256
    1043370 9p8b:SQ (2.48) BS01 rna N/A GO:0000462 ... P62249 41315256
    1043371 9p8b:SR (2.48) BS01 rna N/A GO:0002181 ... P08708 41315256
    1043372 9p8b:SS (2.48) BS01 rna N/A GO:0002181 ... P62269 41315256
    1043373 9p8b:ST (2.48) BS01 rna N/A GO:0000028 ... P39019 41315256
    1043374 9p8b:SU (2.48) BS01 rna N/A N/A P60866 41315256
    1043375 9p8b:SW (2.48) BS01 rna N/A GO:0002181 ... P62244 41315256
    1043376 9p8b:SX (2.48) BS01 rna N/A GO:0002181 ... P62266 41315256
    1043377 9p8b:SY (2.48) BS01 rna N/A GO:0002181 ... P62847 41315256
    1043378 9p8b:SZ (2.48) BS01 rna N/A N/A P62851 41315256
    1043379 9p8b:Sa (2.48) BS01 rna N/A N/A P62854 41315256
    1043380 9p8b:Sa (2.48) BS02 ZN N/A N/A P62854 41315256
    1043381 9p8b:Sb (2.48) BS01 rna N/A GO:0002181 ... P42677 41315256
    1043382 9p8b:Sc (2.48) BS01 rna N/A GO:0000028 ... P62857 41315256
    1043383 9p8b:Sd (2.48) BS01 rna N/A GO:0002181 ... P62273 41315256
    1043384 9p8b:Se (2.48) BS01 rna N/A N/A P62861 41315256
    1043385 9p8b:Sf (2.48) BS01 rna N/A N/A P62979 41315256
    1043386 9p8b:Sg (2.48) BS01 rna N/A GO:0001891 ... P63244 41315256
    1043387 9p8c:CA (3.11) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1043388 9p8c:CB (3.11) BS01 rna N/A GO:0002039 ... P13639 41315256
    1043389 9p8c:CB (3.11) BS02 rna N/A GO:0002039 ... P13639 41315256
    1043390 9p8c:CD (3.11) BS01 rna N/A GO:0003723 ... Q8NC51 41315256
    1043391 9p8c:CI (3.11) BS01 rna N/A N/A P20290 41315256
    1043392 9p8c:LA (3.11) BS01 rna N/A GO:0002181 ... P62917 41315256
    1043393 9p8c:LA (3.11) BS02 rna N/A GO:0002181 ... P62917 41315256
    1043394 9p8c:LA (3.11) BS03 MG N/A GO:0002181 ... P62917 41315256
    1043395 9p8c:LB (3.11) BS01 rna N/A GO:0002181 ... P39023 41315256
    1043396 9p8c:LC (3.11) BS01 rna N/A N/A P36578 41315256
    1043397 9p8c:LC (3.11) BS02 rna N/A N/A P36578 41315256
    1043398 9p8c:LC (3.11) BS03 SPD N/A N/A P36578 41315256
    1043399 9p8c:LD (3.11) BS01 rna N/A GO:0000027 ... P46777 41315256
    1043400 9p8c:LD (3.11) BS02 rna N/A GO:0000027 ... P46777 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).