SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1043401 9p8c:LE (3.11) BS01 rna N/A N/A Q02878 41315256
    1043402 9p8c:LF (3.11) BS01 rna N/A GO:0000463 ... P18124 41315256
    1043403 9p8c:LF (3.11) BS02 rna N/A GO:0000463 ... P18124 41315256
    1043404 9p8c:LG (3.11) BS01 rna N/A GO:0000470 ... P62424 41315256
    1043405 9p8c:LG (3.11) BS02 rna N/A GO:0000470 ... P62424 41315256
    1043406 9p8c:LH (3.11) BS01 rna N/A GO:0002181 ... P32969 41315256
    1043407 9p8c:LI (3.11) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1043408 9p8c:LI (3.11) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1043409 9p8c:LI (3.11) BS03 MG N/A GO:0000027 ... Q96L21 41315256
    1043410 9p8c:LJ (3.11) BS01 rna N/A GO:0000027 ... P62913 41315256
    1043411 9p8c:LJ (3.11) BS02 rna N/A GO:0000027 ... P62913 41315256
    1043412 9p8c:LL (3.11) BS01 rna N/A GO:0002181 ... P26373 41315256
    1043413 9p8c:LL (3.11) BS02 rna N/A GO:0002181 ... P26373 41315256
    1043414 9p8c:LM (3.11) BS01 rna N/A N/A P50914 41315256
    1043415 9p8c:LN (3.11) BS01 rna N/A GO:0002181 ... P61313 41315256
    1043416 9p8c:LN (3.11) BS02 rna N/A GO:0002181 ... P61313 41315256
    1043417 9p8c:LN (3.11) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1043418 9p8c:LO (3.11) BS01 rna N/A GO:0002181 ... P40429 41315256
    1043419 9p8c:LP (3.11) BS01 rna N/A N/A P18621 41315256
    1043420 9p8c:LP (3.11) BS02 rna N/A N/A P18621 41315256
    1043421 9p8c:LQ (3.11) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1043422 9p8c:LR (3.11) BS01 rna N/A GO:0002181 ... P84098 41315256
    1043423 9p8c:LR (3.11) BS02 rna N/A GO:0002181 ... P84098 41315256
    1043424 9p8c:LS (3.11) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1043425 9p8c:LS (3.11) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1043426 9p8c:LT (3.11) BS01 rna N/A GO:0001650 ... P46778 41315256
    1043427 9p8c:LT (3.11) BS02 rna N/A GO:0001650 ... P46778 41315256
    1043428 9p8c:LU (3.11) BS01 rna N/A N/A Q7Z4W8 41315256
    1043429 9p8c:LV (3.11) BS01 rna N/A GO:0000122 ... P62829 41315256
    1043430 9p8c:LV (3.11) BS02 rna N/A GO:0000122 ... P62829 41315256
    1043431 9p8c:LW (3.11) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043432 9p8c:LW (3.11) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043433 9p8c:LX (3.11) BS01 rna N/A N/A P62750 41315256
    1043434 9p8c:LX (3.11) BS02 rna N/A N/A P62750 41315256
    1043435 9p8c:LY (3.11) BS01 rna N/A GO:0002181 ... P61254 41315256
    1043436 9p8c:LY (3.11) BS02 rna N/A GO:0002181 ... P61254 41315256
    1043437 9p8c:LZ (3.11) BS01 rna N/A GO:0002181 ... P61353 41315256
    1043438 9p8c:La (3.11) BS01 rna N/A GO:0002181 ... P46776 41315256
    1043439 9p8c:Lb (3.11) BS01 rna N/A N/A P47914 41315256
    1043440 9p8c:Lc (3.11) BS01 rna N/A N/A P62888 41315256
    1043441 9p8c:Ld (3.11) BS01 rna N/A N/A P62899 41315256
    1043442 9p8c:Le (3.11) BS01 rna N/A GO:0002181 ... P62910 41315256
    1043443 9p8c:Le (3.11) BS02 MG N/A GO:0002181 ... P62910 41315256
    1043444 9p8c:Lf (3.11) BS01 rna N/A GO:0002181 ... P18077 41315256
    1043445 9p8c:Lg (3.11) BS01 rna N/A GO:0002181 ... P49207 41315256
    1043446 9p8c:Lg (3.11) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1043447 9p8c:Lh (3.11) BS01 rna N/A GO:0000463 ... P42766 41315256
    1043448 9p8c:Lh (3.11) BS02 rna N/A GO:0000463 ... P42766 41315256
    1043449 9p8c:Li (3.11) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1043450 9p8c:Lj (3.11) BS01 rna N/A N/A P61927 41315256
    1043451 9p8c:Lj (3.11) BS02 rna N/A N/A P61927 41315256
    1043452 9p8c:Lj (3.11) BS03 ZN N/A N/A P61927 41315256
    1043453 9p8c:Lk (3.11) BS01 rna N/A GO:0002181 ... P63173 41315256
    1043454 9p8c:Ll (3.11) BS01 rna N/A GO:0002181 ... P62891 41315256
    1043455 9p8c:Ll (3.11) BS02 rna N/A GO:0002181 ... P62891 41315256
    1043456 9p8c:Lm (3.11) BS01 rna N/A N/A P62987 41315256
    1043457 9p8c:Lm (3.11) BS02 ZN N/A N/A P62987 41315256
    1043458 9p8c:Lo (3.11) BS01 rna N/A GO:0002181 ... P83881 41315256
    1043459 9p8c:Lo (3.11) BS02 ZN N/A GO:0002181 ... P83881 41315256
    1043460 9p8c:Lp (3.11) BS01 rna N/A GO:0002181 ... P61513 41315256
    1043461 9p8c:Lp (3.11) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1043462 9p8c:Lr (3.11) BS01 rna N/A GO:0002181 ... P46779 41315256
    1043463 9p8c:Ls (3.11) BS01 rna N/A N/A P05388 41315256
    1043464 9p8c:Lt (3.11) BS01 rna N/A GO:0002181 ... P30050 41315256
    1043465 9p8c:SA (3.11) BS01 rna N/A N/A P08865 41315256
    1043466 9p8c:SB (3.11) BS01 rna N/A N/A P61247 41315256
    1043467 9p8c:SC (3.11) BS01 rna N/A N/A P15880 41315256
    1043468 9p8c:SD (3.11) BS01 rna N/A GO:0001228 ... P23396 41315256
    1043469 9p8c:SE (3.11) BS01 rna N/A GO:0002181 ... P62701 41315256
    1043470 9p8c:SF (3.11) BS01 rna N/A GO:0002181 ... P46782 41315256
    1043471 9p8c:SG (3.11) BS01 rna N/A GO:0002181 ... P62753 41315256
    1043472 9p8c:SH (3.11) BS01 rna N/A GO:0002181 ... P62081 41315256
    1043473 9p8c:SI (3.11) BS01 rna N/A GO:0002181 ... P62241 41315256
    1043474 9p8c:SI (3.11) BS02 rna N/A GO:0002181 ... P62241 41315256
    1043475 9p8c:SJ (3.11) BS01 rna N/A GO:0002181 ... P46781 41315256
    1043476 9p8c:SK (3.11) BS01 rna N/A N/A P46783 41315256
    1043477 9p8c:SL (3.11) BS01 rna N/A GO:0002181 ... P62280 41315256
    1043478 9p8c:SL (3.11) BS02 rna N/A GO:0002181 ... P62280 41315256
    1043479 9p8c:SM (3.11) BS01 rna N/A GO:0002181 ... P25398 41315256
    1043480 9p8c:SN (3.11) BS01 rna N/A GO:0000462 ... P62277 41315256
    1043481 9p8c:SN (3.11) BS02 rna N/A GO:0000462 ... P62277 41315256
    1043482 9p8c:SO (3.11) BS01 rna N/A GO:0000028 ... P62263 41315256
    1043483 9p8c:SP (3.11) BS01 rna N/A N/A P62841 41315256
    1043484 9p8c:SQ (3.11) BS01 rna N/A GO:0000462 ... P62249 41315256
    1043485 9p8c:SR (3.11) BS01 rna N/A GO:0002181 ... P08708 41315256
    1043486 9p8c:SS (3.11) BS01 rna N/A GO:0002181 ... P62269 41315256
    1043487 9p8c:ST (3.11) BS01 rna N/A GO:0000028 ... P39019 41315256
    1043488 9p8c:SU (3.11) BS01 rna N/A N/A P60866 41315256
    1043489 9p8c:SW (3.11) BS01 rna N/A GO:0002181 ... P62244 41315256
    1043490 9p8c:SX (3.11) BS01 rna N/A GO:0002181 ... P62266 41315256
    1043491 9p8c:SY (3.11) BS01 rna N/A GO:0002181 ... P62847 41315256
    1043492 9p8c:SZ (3.11) BS01 rna N/A N/A P62851 41315256
    1043493 9p8c:Sa (3.11) BS01 rna N/A N/A P62854 41315256
    1043494 9p8c:Sa (3.11) BS02 ZN N/A N/A P62854 41315256
    1043495 9p8c:Sb (3.11) BS01 rna N/A GO:0002181 ... P42677 41315256
    1043496 9p8c:Sc (3.11) BS01 rna N/A GO:0000028 ... P62857 41315256
    1043497 9p8c:Sd (3.11) BS01 rna N/A GO:0002181 ... P62273 41315256
    1043498 9p8c:Se (3.11) BS01 rna N/A N/A P62861 41315256
    1043499 9p8c:Sf (3.11) BS01 rna N/A N/A P62979 41315256
    1043500 9p8c:Sg (3.11) BS01 rna N/A GO:0001891 ... P63244 41315256
    1043501 9p8h:CH (2.98) BS01 rna N/A N/A O60869 41315256
    1043502 9p8h:CI (2.98) BS01 rna N/A N/A P20290 41315256
    1043503 9p8h:LA (2.98) BS01 rna N/A GO:0002181 ... P62917 41315256
    1043504 9p8h:LA (2.98) BS02 rna N/A GO:0002181 ... P62917 41315256
    1043505 9p8h:LA (2.98) BS03 MG N/A GO:0002181 ... P62917 41315256
    1043506 9p8h:LB (2.98) BS01 rna N/A GO:0002181 ... P39023 41315256
    1043507 9p8h:LC (2.98) BS01 rna N/A N/A P36578 41315256
    1043508 9p8h:LC (2.98) BS02 rna N/A N/A P36578 41315256
    1043509 9p8h:LD (2.98) BS01 rna N/A GO:0000027 ... P46777 41315256
    1043510 9p8h:LD (2.98) BS02 rna N/A GO:0000027 ... P46777 41315256
    1043511 9p8h:LE (2.98) BS01 rna N/A N/A Q02878 41315256
    1043512 9p8h:LF (2.98) BS01 rna N/A GO:0000463 ... P18124 41315256
    1043513 9p8h:LF (2.98) BS02 rna N/A GO:0000463 ... P18124 41315256
    1043514 9p8h:LG (2.98) BS01 rna N/A GO:0000470 ... P62424 41315256
    1043515 9p8h:LG (2.98) BS02 rna N/A GO:0000470 ... P62424 41315256
    1043516 9p8h:LH (2.98) BS01 rna N/A GO:0002181 ... P32969 41315256
    1043517 9p8h:LI (2.98) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1043518 9p8h:LI (2.98) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1043519 9p8h:LI (2.98) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1043520 9p8h:LJ (2.98) BS01 rna N/A GO:0000027 ... P62913 41315256
    1043521 9p8h:LJ (2.98) BS02 rna N/A GO:0000027 ... P62913 41315256
    1043522 9p8h:LL (2.98) BS01 rna N/A GO:0002181 ... P26373 41315256
    1043523 9p8h:LL (2.98) BS02 rna N/A GO:0002181 ... P26373 41315256
    1043524 9p8h:LM (2.98) BS01 rna N/A N/A P50914 41315256
    1043525 9p8h:LN (2.98) BS01 rna N/A GO:0002181 ... P61313 41315256
    1043526 9p8h:LN (2.98) BS02 rna N/A GO:0002181 ... P61313 41315256
    1043527 9p8h:LN (2.98) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1043528 9p8h:LO (2.98) BS01 rna N/A GO:0002181 ... P40429 41315256
    1043529 9p8h:LP (2.98) BS01 rna N/A N/A P18621 41315256
    1043530 9p8h:LP (2.98) BS02 rna N/A N/A P18621 41315256
    1043531 9p8h:LQ (2.98) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1043532 9p8h:LR (2.98) BS01 rna N/A GO:0002181 ... P84098 41315256
    1043533 9p8h:LR (2.98) BS02 rna N/A GO:0002181 ... P84098 41315256
    1043534 9p8h:LS (2.98) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1043535 9p8h:LS (2.98) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1043536 9p8h:LT (2.98) BS01 rna N/A GO:0001650 ... P46778 41315256
    1043537 9p8h:LT (2.98) BS02 rna N/A GO:0001650 ... P46778 41315256
    1043538 9p8h:LU (2.98) BS01 rna N/A N/A Q7Z4W8 41315256
    1043539 9p8h:LV (2.98) BS01 rna N/A GO:0000122 ... P62829 41315256
    1043540 9p8h:LW (2.98) BS01 rna N/A N/A A0A994J4A5 41315256
    1043541 9p8h:LW (2.98) BS02 rna N/A N/A A0A994J4A5 41315256
    1043542 9p8h:LX (2.98) BS01 rna N/A N/A P62750 41315256
    1043543 9p8h:LX (2.98) BS02 rna N/A N/A P62750 41315256
    1043544 9p8h:LY (2.98) BS01 rna N/A GO:0002181 ... P61254 41315256
    1043545 9p8h:LY (2.98) BS02 rna N/A GO:0002181 ... P61254 41315256
    1043546 9p8h:LZ (2.98) BS01 rna N/A GO:0002181 ... P61353 41315256
    1043547 9p8h:La (2.98) BS01 rna N/A GO:0002181 ... P46776 41315256
    1043548 9p8h:Lb (2.98) BS01 rna N/A N/A P47914 41315256
    1043549 9p8h:Lc (2.98) BS01 rna N/A N/A P62888 41315256
    1043550 9p8h:Lc (2.98) BS02 rna N/A N/A P62888 41315256
    1043551 9p8h:Ld (2.98) BS01 rna N/A N/A P62899 41315256
    1043552 9p8h:Le (2.98) BS01 rna N/A GO:0002181 ... P62910 41315256
    1043553 9p8h:Le (2.98) BS02 MG N/A GO:0002181 ... P62910 41315256
    1043554 9p8h:Lf (2.98) BS01 rna N/A GO:0002181 ... P18077 41315256
    1043555 9p8h:Lg (2.98) BS01 rna N/A GO:0002181 ... P49207 41315256
    1043556 9p8h:Lg (2.98) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1043557 9p8h:Lh (2.98) BS01 rna N/A GO:0000463 ... P42766 41315256
    1043558 9p8h:Lh (2.98) BS02 rna N/A GO:0000463 ... P42766 41315256
    1043559 9p8h:Li (2.98) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1043560 9p8h:Lj (2.98) BS01 rna N/A N/A P61927 41315256
    1043561 9p8h:Lj (2.98) BS02 rna N/A N/A P61927 41315256
    1043562 9p8h:Lj (2.98) BS03 ZN N/A N/A P61927 41315256
    1043563 9p8h:Lk (2.98) BS01 rna N/A GO:0002181 ... P63173 41315256
    1043564 9p8h:Ll (2.98) BS01 rna N/A GO:0002181 ... P62891 41315256
    1043565 9p8h:Ll (2.98) BS02 rna N/A GO:0002181 ... P62891 41315256
    1043566 9p8h:Lm (2.98) BS01 rna N/A N/A P62987 41315256
    1043567 9p8h:Lm (2.98) BS02 ZN N/A N/A P62987 41315256
    1043568 9p8h:Lo (2.98) BS01 rna N/A GO:0002181 ... P83881 41315256
    1043569 9p8h:Lo (2.98) BS02 rna N/A GO:0002181 ... P83881 41315256
    1043570 9p8h:Lo (2.98) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1043571 9p8h:Lp (2.98) BS01 rna N/A GO:0002181 ... P61513 41315256
    1043572 9p8h:Lp (2.98) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1043573 9p8h:Lr (2.98) BS01 rna N/A GO:0002181 ... P46779 41315256
    1043574 9p8h:Ls (2.98) BS01 rna N/A N/A P05388 41315256
    1043575 9p8h:Lt (2.98) BS01 rna N/A N/A P30050 41315256
    1043576 9p8h:SA (2.98) BS01 rna N/A N/A P08865 41315256
    1043577 9p8h:SB (2.98) BS01 rna N/A N/A P61247 41315256
    1043578 9p8h:SB (2.98) BS02 rna N/A N/A P61247 41315256
    1043579 9p8h:SC (2.98) BS01 rna N/A N/A P15880 41315256
    1043580 9p8h:SD (2.98) BS01 rna N/A N/A N/A 41315256
    1043581 9p8h:SE (2.98) BS01 rna N/A GO:0002181 ... P62701 41315256
    1043582 9p8h:SF (2.98) BS01 rna N/A GO:0002181 ... P46782 41315256
    1043583 9p8h:SG (2.98) BS01 rna N/A GO:0002181 ... P62753 41315256
    1043584 9p8h:SH (2.98) BS01 rna N/A GO:0002181 ... P62081 41315256
    1043585 9p8h:SI (2.98) BS01 rna N/A GO:0002181 ... P62241 41315256
    1043586 9p8h:SI (2.98) BS02 rna N/A GO:0002181 ... P62241 41315256
    1043587 9p8h:SJ (2.98) BS01 rna N/A GO:0002181 ... P46781 41315256
    1043588 9p8h:SK (2.98) BS01 rna N/A N/A P46783 41315256
    1043589 9p8h:SL (2.98) BS01 rna N/A GO:0002181 ... P62280 41315256
    1043590 9p8h:SM (2.98) BS01 rna N/A GO:0002181 ... P25398 41315256
    1043591 9p8h:SN (2.98) BS01 rna N/A GO:0000462 ... P62277 41315256
    1043592 9p8h:SN (2.98) BS02 rna N/A GO:0000462 ... P62277 41315256
    1043593 9p8h:SO (2.98) BS01 rna N/A GO:0000028 ... P62263 41315256
    1043594 9p8h:SP (2.98) BS01 rna N/A N/A P62841 41315256
    1043595 9p8h:SP (2.98) BS02 rna N/A N/A P62841 41315256
    1043596 9p8h:SQ (2.98) BS01 rna N/A GO:0000462 ... P62249 41315256
    1043597 9p8h:SR (2.98) BS01 rna N/A GO:0002181 ... P08708 41315256
    1043598 9p8h:SS (2.98) BS01 rna N/A GO:0002181 ... P62269 41315256
    1043599 9p8h:ST (2.98) BS01 rna N/A GO:0000028 ... P39019 41315256
    1043600 9p8h:SU (2.98) BS01 rna N/A N/A P60866 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).