SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1043601 9p8h:SW (2.98) BS01 rna N/A GO:0002181 ... P62244 41315256
    1043602 9p8h:SX (2.98) BS01 rna N/A GO:0002181 ... P62266 41315256
    1043603 9p8h:SY (2.98) BS01 rna N/A GO:0002181 ... P62847 41315256
    1043604 9p8h:SZ (2.98) BS01 rna N/A N/A P62851 41315256
    1043605 9p8h:Sa (2.98) BS01 rna N/A N/A P62854 41315256
    1043606 9p8h:Sa (2.98) BS02 ZN N/A N/A P62854 41315256
    1043607 9p8h:Sb (2.98) BS01 rna N/A GO:0002181 ... P42677 41315256
    1043608 9p8h:Sc (2.98) BS01 rna N/A GO:0000028 ... P62857 41315256
    1043609 9p8h:Sd (2.98) BS01 rna N/A GO:0002181 ... P62273 41315256
    1043610 9p8h:Sf (2.98) BS01 rna N/A N/A P62979 41315256
    1043611 9p8h:Sg (2.98) BS01 rna N/A GO:0001891 ... P63244 41315256
    1043612 9p8i:CI (3.89) BS01 rna N/A N/A P20290 41315256
    1043613 9p8i:LA (3.89) BS01 rna N/A GO:0002181 ... P62917 41315256
    1043614 9p8i:LA (3.89) BS02 MG N/A GO:0002181 ... P62917 41315256
    1043615 9p8i:LB (3.89) BS01 rna N/A GO:0002181 ... P39023 41315256
    1043616 9p8i:LC (3.89) BS01 rna N/A N/A P36578 41315256
    1043617 9p8i:LC (3.89) BS02 rna N/A N/A P36578 41315256
    1043618 9p8i:LD (3.89) BS01 rna N/A GO:0000027 ... P46777 41315256
    1043619 9p8i:LD (3.89) BS02 rna N/A GO:0000027 ... P46777 41315256
    1043620 9p8i:LE (3.89) BS01 rna N/A N/A Q02878 41315256
    1043621 9p8i:LF (3.89) BS01 rna N/A GO:0000463 ... P18124 41315256
    1043622 9p8i:LF (3.89) BS02 rna N/A GO:0000463 ... P18124 41315256
    1043623 9p8i:LG (3.89) BS01 rna N/A GO:0000470 ... P62424 41315256
    1043624 9p8i:LG (3.89) BS02 rna N/A GO:0000470 ... P62424 41315256
    1043625 9p8i:LH (3.89) BS01 rna N/A GO:0002181 ... P32969 41315256
    1043626 9p8i:LI (3.89) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1043627 9p8i:LI (3.89) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1043628 9p8i:LI (3.89) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1043629 9p8i:LJ (3.89) BS01 rna N/A GO:0000027 ... P62913 41315256
    1043630 9p8i:LJ (3.89) BS02 rna N/A GO:0000027 ... P62913 41315256
    1043631 9p8i:LJ (3.89) BS03 rna N/A GO:0000027 ... P62913 41315256
    1043632 9p8i:LL (3.89) BS01 rna N/A GO:0002181 ... P26373 41315256
    1043633 9p8i:LL (3.89) BS02 rna N/A GO:0002181 ... P26373 41315256
    1043634 9p8i:LM (3.89) BS01 rna N/A N/A P50914 41315256
    1043635 9p8i:LN (3.89) BS01 rna N/A GO:0002181 ... P61313 41315256
    1043636 9p8i:LN (3.89) BS02 rna N/A GO:0002181 ... P61313 41315256
    1043637 9p8i:LO (3.89) BS01 rna N/A GO:0002181 ... P40429 41315256
    1043638 9p8i:LP (3.89) BS01 rna N/A N/A P18621 41315256
    1043639 9p8i:LP (3.89) BS02 rna N/A N/A P18621 41315256
    1043640 9p8i:LQ (3.89) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1043641 9p8i:LR (3.89) BS01 rna N/A GO:0002181 ... P84098 41315256
    1043642 9p8i:LR (3.89) BS02 rna N/A GO:0002181 ... P84098 41315256
    1043643 9p8i:LS (3.89) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1043644 9p8i:LS (3.89) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1043645 9p8i:LT (3.89) BS01 rna N/A GO:0001650 ... P46778 41315256
    1043646 9p8i:LT (3.89) BS02 rna N/A GO:0001650 ... P46778 41315256
    1043647 9p8i:LU (3.89) BS01 rna N/A N/A Q7Z4W8 41315256
    1043648 9p8i:LV (3.89) BS01 rna N/A GO:0000122 ... P62829 41315256
    1043649 9p8i:LW (3.89) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043650 9p8i:LW (3.89) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043651 9p8i:LX (3.89) BS01 rna N/A N/A P62750 41315256
    1043652 9p8i:LX (3.89) BS02 rna N/A N/A P62750 41315256
    1043653 9p8i:LY (3.89) BS01 rna N/A GO:0002181 ... P61254 41315256
    1043654 9p8i:LY (3.89) BS02 rna N/A GO:0002181 ... P61254 41315256
    1043655 9p8i:LZ (3.89) BS01 rna N/A GO:0002181 ... P61353 41315256
    1043656 9p8i:La (3.89) BS01 rna N/A GO:0002181 ... P46776 41315256
    1043657 9p8i:Lb (3.89) BS01 rna N/A N/A P47914 41315256
    1043658 9p8i:Lc (3.89) BS01 rna N/A N/A P62888 41315256
    1043659 9p8i:Ld (3.89) BS01 rna N/A N/A P62899 41315256
    1043660 9p8i:Le (3.89) BS01 rna N/A GO:0002181 ... P62910 41315256
    1043661 9p8i:Le (3.89) BS02 MG N/A GO:0002181 ... P62910 41315256
    1043662 9p8i:Lf (3.89) BS01 rna N/A GO:0002181 ... P18077 41315256
    1043663 9p8i:Lg (3.89) BS01 rna N/A GO:0002181 ... P49207 41315256
    1043664 9p8i:Lg (3.89) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1043665 9p8i:Lh (3.89) BS01 rna N/A GO:0000463 ... P42766 41315256
    1043666 9p8i:Lh (3.89) BS02 rna N/A GO:0000463 ... P42766 41315256
    1043667 9p8i:Li (3.89) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1043668 9p8i:Lj (3.89) BS01 rna N/A N/A P61927 41315256
    1043669 9p8i:Lj (3.89) BS02 rna N/A N/A P61927 41315256
    1043670 9p8i:Lj (3.89) BS03 ZN N/A N/A P61927 41315256
    1043671 9p8i:Lk (3.89) BS01 rna N/A GO:0002181 ... P63173 41315256
    1043672 9p8i:Ll (3.89) BS01 rna N/A GO:0002181 ... P62891 41315256
    1043673 9p8i:Ll (3.89) BS02 rna N/A GO:0002181 ... P62891 41315256
    1043674 9p8i:Lm (3.89) BS01 rna N/A N/A P62987 41315256
    1043675 9p8i:Lm (3.89) BS02 ZN N/A N/A P62987 41315256
    1043676 9p8i:Lo (3.89) BS01 rna N/A GO:0002181 ... P83881 41315256
    1043677 9p8i:Lo (3.89) BS02 rna N/A GO:0002181 ... P83881 41315256
    1043678 9p8i:Lo (3.89) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1043679 9p8i:Lp (3.89) BS01 rna N/A GO:0002181 ... P61513 41315256
    1043680 9p8i:Lp (3.89) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1043681 9p8i:Lr (3.89) BS01 rna N/A GO:0002181 ... P46779 41315256
    1043682 9p8i:Ls (3.89) BS01 rna N/A N/A P05388 41315256
    1043683 9p8i:Lt (3.89) BS01 rna N/A GO:0002181 ... P30050 41315256
    1043684 9p8i:SA (3.89) BS01 rna N/A N/A P08865 41315256
    1043685 9p8i:SB (3.89) BS01 rna N/A N/A P61247 41315256
    1043686 9p8i:SC (3.89) BS01 rna N/A N/A P15880 41315256
    1043687 9p8i:SD (3.89) BS01 rna N/A GO:0001228 ... P23396 41315256
    1043688 9p8i:SE (3.89) BS01 rna N/A GO:0002181 ... P62701 41315256
    1043689 9p8i:SF (3.89) BS01 rna N/A GO:0002181 ... P46782 41315256
    1043690 9p8i:SG (3.89) BS01 rna N/A GO:0002181 ... P62753 41315256
    1043691 9p8i:SH (3.89) BS01 rna N/A GO:0002181 ... P62081 41315256
    1043692 9p8i:SI (3.89) BS01 rna N/A GO:0002181 ... P62241 41315256
    1043693 9p8i:SI (3.89) BS02 rna N/A GO:0002181 ... P62241 41315256
    1043694 9p8i:SJ (3.89) BS01 rna N/A GO:0002181 ... P46781 41315256
    1043695 9p8i:SK (3.89) BS01 rna N/A N/A P46783 41315256
    1043696 9p8i:SL (3.89) BS01 rna N/A GO:0002181 ... P62280 41315256
    1043697 9p8i:SM (3.89) BS01 rna N/A GO:0002181 ... P25398 41315256
    1043698 9p8i:SN (3.89) BS01 rna N/A GO:0000462 ... P62277 41315256
    1043699 9p8i:SN (3.89) BS02 rna N/A GO:0000462 ... P62277 41315256
    1043700 9p8i:SO (3.89) BS01 rna N/A GO:0000028 ... P62263 41315256
    1043701 9p8i:SP (3.89) BS01 rna N/A N/A P62841 41315256
    1043702 9p8i:SQ (3.89) BS01 rna N/A GO:0000462 ... P62249 41315256
    1043703 9p8i:SR (3.89) BS01 rna N/A GO:0002181 ... P08708 41315256
    1043704 9p8i:SS (3.89) BS01 rna N/A GO:0002181 ... P62269 41315256
    1043705 9p8i:ST (3.89) BS01 rna N/A GO:0000028 ... P39019 41315256
    1043706 9p8i:SU (3.89) BS01 rna N/A N/A P60866 41315256
    1043707 9p8i:SW (3.89) BS01 rna N/A GO:0002181 ... P62244 41315256
    1043708 9p8i:SX (3.89) BS01 rna N/A GO:0002181 ... P62266 41315256
    1043709 9p8i:SY (3.89) BS01 rna N/A GO:0002181 ... P62847 41315256
    1043710 9p8i:SZ (3.89) BS01 rna N/A N/A P62851 41315256
    1043711 9p8i:SZ (3.89) BS02 rna N/A N/A P62851 41315256
    1043712 9p8i:Sa (3.89) BS01 rna N/A N/A P62854 41315256
    1043713 9p8i:Sa (3.89) BS02 ZN N/A N/A P62854 41315256
    1043714 9p8i:Sb (3.89) BS01 rna N/A GO:0002181 ... P42677 41315256
    1043715 9p8i:Sc (3.89) BS01 rna N/A GO:0000028 ... P62857 41315256
    1043716 9p8i:Sd (3.89) BS01 rna N/A GO:0002181 ... P62273 41315256
    1043717 9p8i:Se (3.89) BS01 rna N/A N/A P62861 41315256
    1043718 9p8i:Sf (3.89) BS01 rna N/A N/A P62979 41315256
    1043719 9p8i:Sg (3.89) BS01 rna N/A GO:0001891 ... P63244 41315256
    1043720 9p8l:A (1.62) BS01 OJC N/A N/A Q81ET1 40672179
    1043721 9p8l:A (1.62) BS02 OJC N/A N/A Q81ET1 40672179
    1043722 9p8l:B (1.62) BS01 OJC N/A N/A Q81ET1 40672179
    1043723 9p8l:B (1.62) BS02 OJC N/A N/A Q81ET1 40672179
    1043724 9p8l:C (1.62) BS01 OJC N/A N/A Q81ET1 40672179
    1043725 9p8s:A (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043726 9p8s:B (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043727 9p8s:D (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043728 9p8s:E (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043729 9p8s:G (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043730 9p8s:H (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043731 9p8s:J (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043732 9p8s:K (2.37) BS01 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043733 9p8t:A (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043734 9p8t:A (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043735 9p8t:A (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043736 9p8t:B (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043737 9p8t:B (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043738 9p8t:B (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043739 9p8t:D (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043740 9p8t:D (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043741 9p8t:D (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043742 9p8t:E (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043743 9p8t:E (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043744 9p8t:E (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043745 9p8t:G (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043746 9p8t:G (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043747 9p8t:G (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043748 9p8t:H (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043749 9p8t:H (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043750 9p8t:H (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043751 9p8t:J (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043752 9p8t:J (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043753 9p8t:J (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043754 9p8t:K (2.65) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043755 9p8t:K (2.65) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043756 9p8t:K (2.65) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043757 9p8u:A (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043758 9p8u:A (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043759 9p8u:A (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043760 9p8u:A (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043761 9p8u:B (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043762 9p8u:B (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043763 9p8u:B (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043764 9p8u:B (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043765 9p8u:D (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043766 9p8u:D (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043767 9p8u:D (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043768 9p8u:D (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043769 9p8u:E (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043770 9p8u:E (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043771 9p8u:E (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043772 9p8u:E (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043773 9p8u:G (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043774 9p8u:G (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043775 9p8u:G (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043776 9p8u:G (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043777 9p8u:H (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043778 9p8u:H (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043779 9p8u:H (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043780 9p8u:H (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043781 9p8u:J (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043782 9p8u:J (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043783 9p8u:J (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043784 9p8u:J (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043785 9p8u:K (2.56) BS01 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043786 9p8u:K (2.56) BS02 rna N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043787 9p8u:K (2.56) BS03 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043788 9p8u:K (2.56) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043789 9p8v:A (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043790 9p8v:A (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043791 9p8v:A (2.59) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043792 9p8v:A (2.59) BS04 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043793 9p8v:B (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043794 9p8v:B (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043795 9p8v:B (2.59) BS03 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043796 9p8v:B (2.59) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043797 9p8v:C (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043798 9p8v:C (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043799 9p8v:C (2.59) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043800 9p8v:C (2.59) BS04 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).