SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1043801 9p8v:D (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043802 9p8v:D (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043803 9p8v:D (2.59) BS03 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043804 9p8v:D (2.59) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043805 9p8v:F (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043806 9p8v:F (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043807 9p8v:F (2.59) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043808 9p8v:F (2.59) BS04 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043809 9p8v:G (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043810 9p8v:G (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043811 9p8v:G (2.59) BS03 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043812 9p8v:G (2.59) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043813 9p8v:J (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043814 9p8v:J (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043815 9p8v:J (2.59) BS03 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043816 9p8v:J (2.59) BS04 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043817 9p8v:K (2.59) BS01 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043818 9p8v:K (2.59) BS02 DGT N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043819 9p8v:K (2.59) BS03 TTP N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043820 9p8v:K (2.59) BS04 MG N/A GO:0006203 ... A0A5H6DAK1 40672243
    1043821 9p8w:A (2.68) BS01 MG N/A GO:0006203 ... A4Y1R2 40672243
    1043822 9p8z:A (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043823 9p8z:B (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043824 9p8z:C (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043825 9p8z:D (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043826 9p8z:E (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043827 9p8z:F (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043828 9p8z:G (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043829 9p8z:H (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043830 9p8z:I (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043831 9p8z:J (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043832 9p8z:K (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043833 9p8z:L (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043834 9p8z:M (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043835 9p8z:N (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043836 9p8z:O (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043837 9p8z:P (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043838 9p8z:Q (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043839 9p8z:R (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043840 9p8z:S (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043841 9p8z:T (2.74) BS01 ZN N/A GO:0003934 ... P9WN57 N/A
    1043842 9p92:R (3.8) BS01 peptide N/A N/A P41586 41264251
    1043843 9p93:R (3.2) BS01 peptide N/A N/A P41586 41264251
    1043844 9p94:R (3.0) BS01 peptide N/A N/A P41586 41264251
    1043845 9p95:A (3.05) BS01 CA N/A GO:0007155 ... P13612 40929264
    1043846 9p95:A (3.05) BS02 CA N/A GO:0007155 ... P13612 40929264
    1043847 9p95:A (3.05) BS03 CA N/A GO:0007155 ... P13612 40929264
    1043848 9p95:B (3.05) BS01 MN N/A N/A P26010 40929264
    1043849 9p95:B (3.05) BS02 MN N/A N/A P26010 40929264
    1043850 9p95:B (3.05) BS03 MN N/A N/A P26010 40929264
    1043851 9p96:A (3.1) BS01 CA N/A GO:0007155 ... P13612 40929264
    1043852 9p96:A (3.1) BS02 CA N/A GO:0007155 ... P13612 40929264
    1043853 9p96:A (3.1) BS03 CA N/A GO:0007155 ... P13612 40929264
    1043854 9p96:B (3.1) BS01 CA N/A N/A P26010 40929264
    1043855 9p96:B (3.1) BS02 CA N/A N/A P26010 40929264
    1043856 9p96:B (3.1) BS03 CA N/A N/A P26010 40929264
    1043857 9p97:A (2.92) BS01 CA N/A GO:0007155 ... P38570 40929264
    1043858 9p97:A (2.92) BS02 CA N/A GO:0007155 ... P38570 40929264
    1043859 9p97:A (2.92) BS03 CA N/A GO:0007155 ... P38570 40929264
    1043860 9p97:B (2.92) BS01 CA N/A N/A P26010 40929264
    1043861 9p97:B (2.92) BS02 CA N/A N/A P26010 40929264
    1043862 9p97:B (2.92) BS03 CA N/A N/A P26010 40929264
    1043863 9p98:A (2.93) BS01 CA N/A GO:0007155 ... P38570 40929264
    1043864 9p98:A (2.93) BS02 CA N/A GO:0007155 ... P38570 40929264
    1043865 9p98:A (2.93) BS03 CA N/A GO:0007155 ... P38570 40929264
    1043866 9p98:B (2.93) BS01 CA N/A N/A P26010 40929264
    1043867 9p98:B (2.93) BS02 CA N/A N/A P26010 40929264
    1043868 9p98:B (2.93) BS03 CA N/A N/A P26010 40929264
    1043869 9p99:A (3.37) BS01 CA N/A GO:0007155 ... P38570 40929264
    1043870 9p99:A (3.37) BS02 CA N/A GO:0007155 ... P38570 40929264
    1043871 9p99:A (3.37) BS03 CA N/A GO:0007155 ... P38570 40929264
    1043872 9p99:A (3.37) BS04 MN N/A GO:0007155 ... P38570 40929264
    1043873 9p99:B (3.37) BS01 MN N/A N/A P26010 40929264
    1043874 9p99:B (3.37) BS02 MN N/A N/A P26010 40929264
    1043875 9p99:B (3.37) BS03 MN N/A N/A P26010 40929264
    1043876 9p9b:A (3.31) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043877 9p9b:A (3.31) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043878 9p9b:B (3.31) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043879 9p9b:B (3.31) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043880 9p9b:B (3.31) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043881 9p9b:C (3.31) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043882 9p9b:C (3.31) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043883 9p9b:C (3.31) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043884 9p9b:D (3.31) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043885 9p9b:D (3.31) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043886 9p9c:A (4.01) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043887 9p9c:A (4.01) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043888 9p9c:A (4.01) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043889 9p9c:B (4.01) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043890 9p9c:B (4.01) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043891 9p9c:C (4.01) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043892 9p9c:C (4.01) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043893 9p9c:D (4.01) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043894 9p9c:D (4.01) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043895 9p9d:A (3.82) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043896 9p9d:A (3.82) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043897 9p9d:B (3.82) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043898 9p9d:B (3.82) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043899 9p9d:C (3.82) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043900 9p9d:C (3.82) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043901 9p9d:C (3.82) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043902 9p9d:D (3.82) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043903 9p9d:D (3.82) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043904 9p9e:A (3.82) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043905 9p9e:A (3.82) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043906 9p9e:B (3.82) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043907 9p9e:B (3.82) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043908 9p9e:B (3.82) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043909 9p9e:C (3.82) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043910 9p9e:C (3.82) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043911 9p9e:C (3.82) BS03 GLU N/A GO:0004970 ... P19493 N/A
    1043912 9p9e:D (3.82) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043913 9p9e:D (3.82) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043914 9p9f:A (3.89) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043915 9p9f:A (3.89) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043916 9p9f:A (3.89) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043917 9p9f:B (3.89) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043918 9p9f:B (3.89) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043919 9p9f:B (3.89) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043920 9p9f:C (3.89) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043921 9p9f:C (3.89) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043922 9p9f:D (3.89) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043923 9p9f:D (3.89) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043924 9p9g:A (4.06) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043925 9p9g:A (4.06) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043926 9p9g:B (4.06) BS01 GLU N/A GO:0004970 ... P19493 N/A
    1043927 9p9g:B (4.06) BS02 CYZ N/A GO:0004970 ... P19493 N/A
    1043928 9p9g:B (4.06) BS03 CYZ N/A GO:0004970 ... P19493 N/A
    1043929 9p9g:C (4.06) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043930 9p9g:C (4.06) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043931 9p9g:D (4.06) BS01 CYZ N/A GO:0004970 ... P19493 N/A
    1043932 9p9g:D (4.06) BS02 GLU N/A GO:0004970 ... P19493 N/A
    1043933 9p9h:CB (2.84) BS01 rna N/A GO:0002039 ... P13639 41315256
    1043934 9p9h:CB (2.84) BS02 rna N/A GO:0002039 ... P13639 41315256
    1043935 9p9h:CE (2.84) BS01 rna N/A N/A Q96CT7 41315256
    1043936 9p9h:CE (2.84) BS02 rna N/A N/A Q96CT7 41315256
    1043937 9p9h:CI (2.84) BS01 rna N/A N/A P20290 41315256
    1043938 9p9h:LA (2.84) BS01 rna N/A GO:0002181 ... P62917 41315256
    1043939 9p9h:LA (2.84) BS02 MG N/A GO:0002181 ... P62917 41315256
    1043940 9p9h:LB (2.84) BS01 rna N/A GO:0002181 ... P39023 41315256
    1043941 9p9h:LC (2.84) BS01 rna N/A N/A P36578 41315256
    1043942 9p9h:LC (2.84) BS02 rna N/A N/A P36578 41315256
    1043943 9p9h:LD (2.84) BS01 rna N/A GO:0000027 ... P46777 41315256
    1043944 9p9h:LD (2.84) BS02 rna N/A GO:0000027 ... P46777 41315256
    1043945 9p9h:LE (2.84) BS01 rna N/A N/A Q02878 41315256
    1043946 9p9h:LF (2.84) BS01 rna N/A GO:0000463 ... P18124 41315256
    1043947 9p9h:LF (2.84) BS02 rna N/A GO:0000463 ... P18124 41315256
    1043948 9p9h:LG (2.84) BS01 rna N/A GO:0000470 ... P62424 41315256
    1043949 9p9h:LG (2.84) BS02 rna N/A GO:0000470 ... P62424 41315256
    1043950 9p9h:LH (2.84) BS01 rna N/A GO:0002181 ... P32969 41315256
    1043951 9p9h:LI (2.84) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1043952 9p9h:LI (2.84) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1043953 9p9h:LJ (2.84) BS01 rna N/A GO:0000027 ... P62913 41315256
    1043954 9p9h:LJ (2.84) BS02 rna N/A GO:0000027 ... P62913 41315256
    1043955 9p9h:LL (2.84) BS01 rna N/A GO:0002181 ... P26373 41315256
    1043956 9p9h:LL (2.84) BS02 rna N/A GO:0002181 ... P26373 41315256
    1043957 9p9h:LM (2.84) BS01 rna N/A N/A P50914 41315256
    1043958 9p9h:LN (2.84) BS01 rna N/A GO:0002181 ... P61313 41315256
    1043959 9p9h:LN (2.84) BS02 rna N/A GO:0002181 ... P61313 41315256
    1043960 9p9h:LN (2.84) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1043961 9p9h:LO (2.84) BS01 rna N/A GO:0002181 ... P40429 41315256
    1043962 9p9h:LP (2.84) BS01 rna N/A N/A P18621 41315256
    1043963 9p9h:LP (2.84) BS02 rna N/A N/A P18621 41315256
    1043964 9p9h:LQ (2.84) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1043965 9p9h:LR (2.84) BS01 rna N/A GO:0002181 ... P84098 41315256
    1043966 9p9h:LR (2.84) BS02 rna N/A GO:0002181 ... P84098 41315256
    1043967 9p9h:LS (2.84) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1043968 9p9h:LS (2.84) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1043969 9p9h:LT (2.84) BS01 rna N/A GO:0001650 ... P46778 41315256
    1043970 9p9h:LT (2.84) BS02 rna N/A GO:0001650 ... P46778 41315256
    1043971 9p9h:LU (2.84) BS01 rna N/A N/A Q7Z4W8 41315256
    1043972 9p9h:LV (2.84) BS01 rna N/A GO:0000122 ... P62829 41315256
    1043973 9p9h:LW (2.84) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043974 9p9h:LW (2.84) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1043975 9p9h:LX (2.84) BS01 rna N/A N/A P62750 41315256
    1043976 9p9h:LX (2.84) BS02 rna N/A N/A P62750 41315256
    1043977 9p9h:LY (2.84) BS01 rna N/A GO:0002181 ... P61254 41315256
    1043978 9p9h:LY (2.84) BS02 rna N/A GO:0002181 ... P61254 41315256
    1043979 9p9h:LZ (2.84) BS01 rna N/A GO:0002181 ... P61353 41315256
    1043980 9p9h:La (2.84) BS01 rna N/A GO:0002181 ... P46776 41315256
    1043981 9p9h:Lb (2.84) BS01 rna N/A N/A P47914 41315256
    1043982 9p9h:Lc (2.84) BS01 rna N/A N/A P62888 41315256
    1043983 9p9h:Ld (2.84) BS01 rna N/A N/A P62899 41315256
    1043984 9p9h:Le (2.84) BS01 rna N/A GO:0002181 ... P62910 41315256
    1043985 9p9h:Le (2.84) BS02 MG N/A GO:0002181 ... P62910 41315256
    1043986 9p9h:Lf (2.84) BS01 rna N/A GO:0002181 ... P18077 41315256
    1043987 9p9h:Lg (2.84) BS01 rna N/A GO:0002181 ... P49207 41315256
    1043988 9p9h:Lg (2.84) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1043989 9p9h:Lh (2.84) BS01 rna N/A GO:0000463 ... P42766 41315256
    1043990 9p9h:Lh (2.84) BS02 rna N/A GO:0000463 ... P42766 41315256
    1043991 9p9h:Li (2.84) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1043992 9p9h:Lj (2.84) BS01 rna N/A N/A P61927 41315256
    1043993 9p9h:Lj (2.84) BS02 rna N/A N/A P61927 41315256
    1043994 9p9h:Lj (2.84) BS03 ZN N/A N/A P61927 41315256
    1043995 9p9h:Lk (2.84) BS01 rna N/A GO:0002181 ... P63173 41315256
    1043996 9p9h:Ll (2.84) BS01 rna N/A GO:0002181 ... P62891 41315256
    1043997 9p9h:Ll (2.84) BS02 rna N/A GO:0002181 ... P62891 41315256
    1043998 9p9h:Lm (2.84) BS01 rna N/A N/A P62987 41315256
    1043999 9p9h:Lm (2.84) BS02 ZN N/A N/A P62987 41315256
    1044000 9p9h:Lo (2.84) BS01 rna N/A GO:0002181 ... P83881 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).