SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1044001 9p9h:Lo (2.84) BS02 rna N/A GO:0002181 ... P83881 41315256
    1044002 9p9h:Lo (2.84) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1044003 9p9h:Lp (2.84) BS01 rna N/A GO:0002181 ... P61513 41315256
    1044004 9p9h:Lp (2.84) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1044005 9p9h:Lr (2.84) BS01 rna N/A GO:0002181 ... P46779 41315256
    1044006 9p9h:Ls (2.84) BS01 rna N/A N/A P05388 41315256
    1044007 9p9h:Lt (2.84) BS01 rna N/A GO:0002181 ... P30050 41315256
    1044008 9p9h:SA (2.84) BS01 rna N/A N/A P08865 41315256
    1044009 9p9h:SB (2.84) BS01 rna N/A N/A P61247 41315256
    1044010 9p9h:SC (2.84) BS01 rna N/A N/A P15880 41315256
    1044011 9p9h:SD (2.84) BS01 rna N/A GO:0001228 ... P23396 41315256
    1044012 9p9h:SE (2.84) BS01 rna N/A GO:0002181 ... P62701 41315256
    1044013 9p9h:SF (2.84) BS01 rna N/A GO:0002181 ... P46782 41315256
    1044014 9p9h:SF (2.84) BS02 rna N/A GO:0002181 ... P46782 41315256
    1044015 9p9h:SG (2.84) BS01 rna N/A GO:0002181 ... P62753 41315256
    1044016 9p9h:SH (2.84) BS01 rna N/A GO:0002181 ... P62081 41315256
    1044017 9p9h:SI (2.84) BS01 rna N/A GO:0002181 ... P62241 41315256
    1044018 9p9h:SI (2.84) BS02 rna N/A GO:0002181 ... P62241 41315256
    1044019 9p9h:SJ (2.84) BS01 rna N/A GO:0002181 ... P46781 41315256
    1044020 9p9h:SK (2.84) BS01 rna N/A N/A P46783 41315256
    1044021 9p9h:SL (2.84) BS01 rna N/A GO:0002181 ... P62280 41315256
    1044022 9p9h:SL (2.84) BS02 rna N/A GO:0002181 ... P62280 41315256
    1044023 9p9h:SM (2.84) BS01 rna N/A GO:0002181 ... P25398 41315256
    1044024 9p9h:SN (2.84) BS01 rna N/A GO:0000462 ... P62277 41315256
    1044025 9p9h:SN (2.84) BS02 rna N/A GO:0000462 ... P62277 41315256
    1044026 9p9h:SO (2.84) BS01 rna N/A GO:0000028 ... P62263 41315256
    1044027 9p9h:SP (2.84) BS01 rna N/A N/A P62841 41315256
    1044028 9p9h:SQ (2.84) BS01 rna N/A GO:0000462 ... P62249 41315256
    1044029 9p9h:SR (2.84) BS01 rna N/A GO:0002181 ... P08708 41315256
    1044030 9p9h:SS (2.84) BS01 rna N/A GO:0002181 ... P62269 41315256
    1044031 9p9h:ST (2.84) BS01 rna N/A GO:0000028 ... P39019 41315256
    1044032 9p9h:SU (2.84) BS01 rna N/A N/A P60866 41315256
    1044033 9p9h:SW (2.84) BS01 rna N/A GO:0002181 ... P62244 41315256
    1044034 9p9h:SX (2.84) BS01 rna N/A GO:0002181 ... P62266 41315256
    1044035 9p9h:SY (2.84) BS01 rna N/A GO:0002181 ... P62847 41315256
    1044036 9p9h:SZ (2.84) BS01 rna N/A N/A P62851 41315256
    1044037 9p9h:Sa (2.84) BS01 rna N/A N/A P62854 41315256
    1044038 9p9h:Sa (2.84) BS02 ZN N/A N/A P62854 41315256
    1044039 9p9h:Sb (2.84) BS01 rna N/A GO:0002181 ... P42677 41315256
    1044040 9p9h:Sc (2.84) BS01 rna N/A GO:0000028 ... P62857 41315256
    1044041 9p9h:Sd (2.84) BS01 rna N/A GO:0002181 ... P62273 41315256
    1044042 9p9h:Se (2.84) BS01 rna N/A N/A P62861 41315256
    1044043 9p9h:Sf (2.84) BS01 rna N/A N/A P62979 41315256
    1044044 9p9h:Sg (2.84) BS01 rna N/A GO:0001891 ... P63244 41315256
    1044045 9p9i:CB (2.77) BS01 rna N/A GO:0002039 ... P13639 41315256
    1044046 9p9i:CB (2.77) BS02 rna N/A GO:0002039 ... P13639 41315256
    1044047 9p9i:CI (2.77) BS01 rna N/A N/A P20290 41315256
    1044048 9p9i:LA (2.77) BS01 rna N/A GO:0002181 ... P62917 41315256
    1044049 9p9i:LA (2.77) BS02 MG N/A GO:0002181 ... P62917 41315256
    1044050 9p9i:LB (2.77) BS01 rna N/A GO:0002181 ... P39023 41315256
    1044051 9p9i:LC (2.77) BS01 rna N/A N/A P36578 41315256
    1044052 9p9i:LC (2.77) BS02 rna N/A N/A P36578 41315256
    1044053 9p9i:LD (2.77) BS01 rna N/A GO:0000027 ... P46777 41315256
    1044054 9p9i:LD (2.77) BS02 rna N/A GO:0000027 ... P46777 41315256
    1044055 9p9i:LE (2.77) BS01 rna N/A N/A Q02878 41315256
    1044056 9p9i:LF (2.77) BS01 rna N/A GO:0000463 ... P18124 41315256
    1044057 9p9i:LF (2.77) BS02 rna N/A GO:0000463 ... P18124 41315256
    1044058 9p9i:LG (2.77) BS01 rna N/A GO:0000470 ... P62424 41315256
    1044059 9p9i:LG (2.77) BS02 rna N/A GO:0000470 ... P62424 41315256
    1044060 9p9i:LH (2.77) BS01 rna N/A GO:0002181 ... P32969 41315256
    1044061 9p9i:LI (2.77) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1044062 9p9i:LI (2.77) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1044063 9p9i:LJ (2.77) BS01 rna N/A GO:0000027 ... P62913 41315256
    1044064 9p9i:LJ (2.77) BS02 rna N/A GO:0000027 ... P62913 41315256
    1044065 9p9i:LL (2.77) BS01 rna N/A GO:0002181 ... P26373 41315256
    1044066 9p9i:LL (2.77) BS02 rna N/A GO:0002181 ... P26373 41315256
    1044067 9p9i:LM (2.77) BS01 rna N/A N/A P50914 41315256
    1044068 9p9i:LN (2.77) BS01 rna N/A GO:0002181 ... P61313 41315256
    1044069 9p9i:LN (2.77) BS02 rna N/A GO:0002181 ... P61313 41315256
    1044070 9p9i:LN (2.77) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1044071 9p9i:LO (2.77) BS01 rna N/A GO:0002181 ... P40429 41315256
    1044072 9p9i:LP (2.77) BS01 rna N/A N/A P18621 41315256
    1044073 9p9i:LP (2.77) BS02 rna N/A N/A P18621 41315256
    1044074 9p9i:LQ (2.77) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1044075 9p9i:LR (2.77) BS01 rna N/A GO:0002181 ... P84098 41315256
    1044076 9p9i:LR (2.77) BS02 rna N/A GO:0002181 ... P84098 41315256
    1044077 9p9i:LS (2.77) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1044078 9p9i:LS (2.77) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1044079 9p9i:LT (2.77) BS01 rna N/A GO:0001650 ... P46778 41315256
    1044080 9p9i:LT (2.77) BS02 rna N/A GO:0001650 ... P46778 41315256
    1044081 9p9i:LU (2.77) BS01 rna N/A N/A Q7Z4W8 41315256
    1044082 9p9i:LV (2.77) BS01 rna N/A GO:0000122 ... P62829 41315256
    1044083 9p9i:LW (2.77) BS01 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1044084 9p9i:LW (2.77) BS02 rna N/A GO:0003735 ... A0A994J4A5 41315256
    1044085 9p9i:LX (2.77) BS01 rna N/A N/A P62750 41315256
    1044086 9p9i:LX (2.77) BS02 rna N/A N/A P62750 41315256
    1044087 9p9i:LY (2.77) BS01 rna N/A GO:0002181 ... P61254 41315256
    1044088 9p9i:LY (2.77) BS02 rna N/A GO:0002181 ... P61254 41315256
    1044089 9p9i:LZ (2.77) BS01 rna N/A GO:0002181 ... P61353 41315256
    1044090 9p9i:La (2.77) BS01 rna N/A GO:0002181 ... P46776 41315256
    1044091 9p9i:Lb (2.77) BS01 rna N/A N/A P47914 41315256
    1044092 9p9i:Lc (2.77) BS01 rna N/A N/A P62888 41315256
    1044093 9p9i:Ld (2.77) BS01 rna N/A N/A P62899 41315256
    1044094 9p9i:Le (2.77) BS01 rna N/A GO:0002181 ... P62910 41315256
    1044095 9p9i:Le (2.77) BS02 MG N/A GO:0002181 ... P62910 41315256
    1044096 9p9i:Lf (2.77) BS01 rna N/A GO:0002181 ... P18077 41315256
    1044097 9p9i:Lg (2.77) BS01 rna N/A GO:0002181 ... P49207 41315256
    1044098 9p9i:Lg (2.77) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1044099 9p9i:Lh (2.77) BS01 rna N/A GO:0000463 ... P42766 41315256
    1044100 9p9i:Lh (2.77) BS02 rna N/A GO:0000463 ... P42766 41315256
    1044101 9p9i:Li (2.77) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1044102 9p9i:Lj (2.77) BS01 rna N/A N/A P61927 41315256
    1044103 9p9i:Lj (2.77) BS02 rna N/A N/A P61927 41315256
    1044104 9p9i:Lj (2.77) BS03 ZN N/A N/A P61927 41315256
    1044105 9p9i:Lk (2.77) BS01 rna N/A GO:0002181 ... P63173 41315256
    1044106 9p9i:Ll (2.77) BS01 rna N/A GO:0002181 ... P62891 41315256
    1044107 9p9i:Ll (2.77) BS02 rna N/A GO:0002181 ... P62891 41315256
    1044108 9p9i:Lm (2.77) BS01 rna N/A N/A P62987 41315256
    1044109 9p9i:Lm (2.77) BS02 ZN N/A N/A P62987 41315256
    1044110 9p9i:Lo (2.77) BS01 rna N/A GO:0002181 ... P83881 41315256
    1044111 9p9i:Lo (2.77) BS02 rna N/A GO:0002181 ... P83881 41315256
    1044112 9p9i:Lo (2.77) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1044113 9p9i:Lp (2.77) BS01 rna N/A GO:0002181 ... P61513 41315256
    1044114 9p9i:Lp (2.77) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1044115 9p9i:Lr (2.77) BS01 rna N/A GO:0002181 ... P46779 41315256
    1044116 9p9i:Ls (2.77) BS01 rna N/A N/A P05388 41315256
    1044117 9p9i:Lt (2.77) BS01 rna N/A GO:0002181 ... P30050 41315256
    1044118 9p9i:SA (2.77) BS01 rna N/A N/A P08865 41315256
    1044119 9p9i:SB (2.77) BS01 rna N/A N/A P61247 41315256
    1044120 9p9i:SC (2.77) BS01 rna N/A N/A P15880 41315256
    1044121 9p9i:SD (2.77) BS01 rna N/A GO:0001228 ... P23396 41315256
    1044122 9p9i:SE (2.77) BS01 rna N/A GO:0002181 ... P62701 41315256
    1044123 9p9i:SF (2.77) BS01 rna N/A GO:0002181 ... P46782 41315256
    1044124 9p9i:SF (2.77) BS02 rna N/A GO:0002181 ... P46782 41315256
    1044125 9p9i:SG (2.77) BS01 rna N/A GO:0002181 ... P62753 41315256
    1044126 9p9i:SH (2.77) BS01 rna N/A GO:0002181 ... P62081 41315256
    1044127 9p9i:SI (2.77) BS01 rna N/A GO:0002181 ... P62241 41315256
    1044128 9p9i:SI (2.77) BS02 rna N/A GO:0002181 ... P62241 41315256
    1044129 9p9i:SJ (2.77) BS01 rna N/A GO:0002181 ... P46781 41315256
    1044130 9p9i:SK (2.77) BS01 rna N/A N/A P46783 41315256
    1044131 9p9i:SL (2.77) BS01 rna N/A GO:0002181 ... P62280 41315256
    1044132 9p9i:SL (2.77) BS02 rna N/A GO:0002181 ... P62280 41315256
    1044133 9p9i:SM (2.77) BS01 rna N/A GO:0002181 ... P25398 41315256
    1044134 9p9i:SN (2.77) BS01 rna N/A GO:0000462 ... P62277 41315256
    1044135 9p9i:SN (2.77) BS02 rna N/A GO:0000462 ... P62277 41315256
    1044136 9p9i:SO (2.77) BS01 rna N/A GO:0000028 ... P62263 41315256
    1044137 9p9i:SP (2.77) BS01 rna N/A N/A P62841 41315256
    1044138 9p9i:SQ (2.77) BS01 rna N/A GO:0000462 ... P62249 41315256
    1044139 9p9i:SR (2.77) BS01 rna N/A GO:0002181 ... P08708 41315256
    1044140 9p9i:SS (2.77) BS01 rna N/A GO:0002181 ... P62269 41315256
    1044141 9p9i:ST (2.77) BS01 rna N/A GO:0000028 ... P39019 41315256
    1044142 9p9i:SU (2.77) BS01 rna N/A N/A P60866 41315256
    1044143 9p9i:SW (2.77) BS01 rna N/A GO:0002181 ... P62244 41315256
    1044144 9p9i:SX (2.77) BS01 rna N/A GO:0002181 ... P62266 41315256
    1044145 9p9i:SY (2.77) BS01 rna N/A GO:0002181 ... P62847 41315256
    1044146 9p9i:SZ (2.77) BS01 rna N/A N/A P62851 41315256
    1044147 9p9i:Sa (2.77) BS01 rna N/A N/A P62854 41315256
    1044148 9p9i:Sa (2.77) BS02 ZN N/A N/A P62854 41315256
    1044149 9p9i:Sb (2.77) BS01 rna N/A GO:0002181 ... P42677 41315256
    1044150 9p9i:Sc (2.77) BS01 rna N/A GO:0000028 ... P62857 41315256
    1044151 9p9i:Sd (2.77) BS01 rna N/A GO:0002181 ... P62273 41315256
    1044152 9p9i:Se (2.77) BS01 rna N/A N/A P62861 41315256
    1044153 9p9i:Sf (2.77) BS01 rna N/A N/A P62979 41315256
    1044154 9p9i:Sg (2.77) BS01 rna N/A GO:0001891 ... P63244 41315256
    1044155 9p9j:CA (2.87) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1044156 9p9j:LA (2.87) BS01 rna N/A GO:0002181 ... P62917 41315256
    1044157 9p9j:LA (2.87) BS02 MG N/A GO:0002181 ... P62917 41315256
    1044158 9p9j:LB (2.87) BS01 rna N/A GO:0002181 ... P39023 41315256
    1044159 9p9j:LC (2.87) BS01 rna N/A N/A P36578 41315256
    1044160 9p9j:LC (2.87) BS02 rna N/A N/A P36578 41315256
    1044161 9p9j:LD (2.87) BS01 rna N/A GO:0000027 ... P46777 41315256
    1044162 9p9j:LD (2.87) BS02 rna N/A GO:0000027 ... P46777 41315256
    1044163 9p9j:LE (2.87) BS01 rna N/A N/A Q02878 41315256
    1044164 9p9j:LF (2.87) BS01 rna N/A GO:0000463 ... P18124 41315256
    1044165 9p9j:LF (2.87) BS02 rna N/A GO:0000463 ... P18124 41315256
    1044166 9p9j:LG (2.87) BS01 rna N/A GO:0000470 ... P62424 41315256
    1044167 9p9j:LG (2.87) BS02 rna N/A GO:0000470 ... P62424 41315256
    1044168 9p9j:LH (2.87) BS01 rna N/A GO:0002181 ... P32969 41315256
    1044169 9p9j:LI (2.87) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1044170 9p9j:LI (2.87) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1044171 9p9j:LJ (2.87) BS01 rna N/A GO:0000027 ... P62913 41315256
    1044172 9p9j:LJ (2.87) BS02 rna N/A GO:0000027 ... P62913 41315256
    1044173 9p9j:LL (2.87) BS01 rna N/A GO:0002181 ... P26373 41315256
    1044174 9p9j:LL (2.87) BS02 rna N/A GO:0002181 ... P26373 41315256
    1044175 9p9j:LM (2.87) BS01 rna N/A N/A P50914 41315256
    1044176 9p9j:LN (2.87) BS01 rna N/A GO:0002181 ... P61313 41315256
    1044177 9p9j:LN (2.87) BS02 rna N/A GO:0002181 ... P61313 41315256
    1044178 9p9j:LN (2.87) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1044179 9p9j:LO (2.87) BS01 rna N/A GO:0002181 ... P40429 41315256
    1044180 9p9j:LP (2.87) BS01 rna N/A N/A P18621 41315256
    1044181 9p9j:LP (2.87) BS02 rna N/A N/A P18621 41315256
    1044182 9p9j:LQ (2.87) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1044183 9p9j:LR (2.87) BS01 rna N/A GO:0002181 ... P84098 41315256
    1044184 9p9j:LS (2.87) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1044185 9p9j:LS (2.87) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1044186 9p9j:LT (2.87) BS01 rna N/A GO:0001650 ... P46778 41315256
    1044187 9p9j:LT (2.87) BS02 rna N/A GO:0001650 ... P46778 41315256
    1044188 9p9j:LU (2.87) BS01 rna N/A N/A Q7Z4W8 41315256
    1044189 9p9j:LV (2.87) BS01 rna N/A GO:0000122 ... P62829 41315256
    1044190 9p9j:LX (2.87) BS01 rna N/A N/A P62750 41315256
    1044191 9p9j:LX (2.87) BS02 rna N/A N/A P62750 41315256
    1044192 9p9j:LY (2.87) BS01 rna N/A GO:0002181 ... P61254 41315256
    1044193 9p9j:LY (2.87) BS02 rna N/A GO:0002181 ... P61254 41315256
    1044194 9p9j:LZ (2.87) BS01 rna N/A GO:0002181 ... P61353 41315256
    1044195 9p9j:La (2.87) BS01 rna N/A GO:0002181 ... P46776 41315256
    1044196 9p9j:Lb (2.87) BS01 rna N/A N/A P47914 41315256
    1044197 9p9j:Lc (2.87) BS01 rna N/A N/A P62888 41315256
    1044198 9p9j:Ld (2.87) BS01 rna N/A N/A P62899 41315256
    1044199 9p9j:Le (2.87) BS01 rna N/A GO:0002181 ... P62910 41315256
    1044200 9p9j:Le (2.87) BS02 MG N/A GO:0002181 ... P62910 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).