SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1044201 9p9j:Lf (2.87) BS01 rna N/A GO:0002181 ... P18077 41315256
    1044202 9p9j:Lg (2.87) BS01 rna N/A GO:0002181 ... P49207 41315256
    1044203 9p9j:Lg (2.87) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1044204 9p9j:Lh (2.87) BS01 rna N/A GO:0000463 ... P42766 41315256
    1044205 9p9j:Lh (2.87) BS02 rna N/A GO:0000463 ... P42766 41315256
    1044206 9p9j:Li (2.87) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1044207 9p9j:Lj (2.87) BS01 rna N/A N/A P61927 41315256
    1044208 9p9j:Lj (2.87) BS02 rna N/A N/A P61927 41315256
    1044209 9p9j:Lj (2.87) BS03 ZN N/A N/A P61927 41315256
    1044210 9p9j:Lk (2.87) BS01 rna N/A GO:0002181 ... P63173 41315256
    1044211 9p9j:Ll (2.87) BS01 rna N/A GO:0002181 ... P62891 41315256
    1044212 9p9j:Ll (2.87) BS02 rna N/A GO:0002181 ... P62891 41315256
    1044213 9p9j:Lm (2.87) BS01 rna N/A N/A P62987 41315256
    1044214 9p9j:Lm (2.87) BS02 ZN N/A N/A P62987 41315256
    1044215 9p9j:Lo (2.87) BS01 rna N/A GO:0002181 ... P83881 41315256
    1044216 9p9j:Lo (2.87) BS02 ZN N/A GO:0002181 ... P83881 41315256
    1044217 9p9j:Lp (2.87) BS01 rna N/A GO:0002181 ... P61513 41315256
    1044218 9p9j:Lp (2.87) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1044219 9p9j:Lr (2.87) BS01 rna N/A GO:0002181 ... P46779 41315256
    1044220 9p9k:CA (2.96) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1044221 9p9k:LA (2.96) BS01 rna N/A GO:0002181 ... P62917 41315256
    1044222 9p9k:LA (2.96) BS02 MG N/A GO:0002181 ... P62917 41315256
    1044223 9p9k:LB (2.96) BS01 rna N/A GO:0002181 ... P39023 41315256
    1044224 9p9k:LC (2.96) BS01 rna N/A N/A P36578 41315256
    1044225 9p9k:LC (2.96) BS02 rna N/A N/A P36578 41315256
    1044226 9p9k:LD (2.96) BS01 rna N/A GO:0000027 ... P46777 41315256
    1044227 9p9k:LD (2.96) BS02 rna N/A GO:0000027 ... P46777 41315256
    1044228 9p9k:LE (2.96) BS01 rna N/A N/A Q02878 41315256
    1044229 9p9k:LF (2.96) BS01 rna N/A GO:0000463 ... P18124 41315256
    1044230 9p9k:LF (2.96) BS02 rna N/A GO:0000463 ... P18124 41315256
    1044231 9p9k:LG (2.96) BS01 rna N/A GO:0000470 ... P62424 41315256
    1044232 9p9k:LG (2.96) BS02 rna N/A GO:0000470 ... P62424 41315256
    1044233 9p9k:LH (2.96) BS01 rna N/A GO:0002181 ... P32969 41315256
    1044234 9p9k:LI (2.96) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1044235 9p9k:LI (2.96) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1044236 9p9k:LJ (2.96) BS01 rna N/A GO:0000027 ... P62913 41315256
    1044237 9p9k:LJ (2.96) BS02 rna N/A GO:0000027 ... P62913 41315256
    1044238 9p9k:LL (2.96) BS01 rna N/A GO:0002181 ... P26373 41315256
    1044239 9p9k:LL (2.96) BS02 rna N/A GO:0002181 ... P26373 41315256
    1044240 9p9k:LM (2.96) BS01 rna N/A N/A P50914 41315256
    1044241 9p9k:LN (2.96) BS01 rna N/A GO:0002181 ... P61313 41315256
    1044242 9p9k:LN (2.96) BS02 rna N/A GO:0002181 ... P61313 41315256
    1044243 9p9k:LN (2.96) BS03 SPD N/A GO:0002181 ... P61313 41315256
    1044244 9p9k:LO (2.96) BS01 rna N/A GO:0002181 ... P40429 41315256
    1044245 9p9k:LP (2.96) BS01 rna N/A N/A P18621 41315256
    1044246 9p9k:LP (2.96) BS02 rna N/A N/A P18621 41315256
    1044247 9p9k:LQ (2.96) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1044248 9p9k:LR (2.96) BS01 rna N/A GO:0002181 ... P84098 41315256
    1044249 9p9k:LS (2.96) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1044250 9p9k:LS (2.96) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1044251 9p9k:LT (2.96) BS01 rna N/A GO:0001650 ... P46778 41315256
    1044252 9p9k:LT (2.96) BS02 rna N/A GO:0001650 ... P46778 41315256
    1044253 9p9k:LU (2.96) BS01 rna N/A N/A Q7Z4W8 41315256
    1044254 9p9k:LV (2.96) BS01 rna N/A GO:0000122 ... P62829 41315256
    1044255 9p9k:LX (2.96) BS01 rna N/A N/A P62750 41315256
    1044256 9p9k:LX (2.96) BS02 rna N/A N/A P62750 41315256
    1044257 9p9k:LY (2.96) BS01 rna N/A GO:0002181 ... P61254 41315256
    1044258 9p9k:LY (2.96) BS02 rna N/A GO:0002181 ... P61254 41315256
    1044259 9p9k:LZ (2.96) BS01 rna N/A GO:0002181 ... P61353 41315256
    1044260 9p9k:La (2.96) BS01 rna N/A GO:0002181 ... P46776 41315256
    1044261 9p9k:Lb (2.96) BS01 rna N/A N/A P47914 41315256
    1044262 9p9k:Lc (2.96) BS01 rna N/A N/A P62888 41315256
    1044263 9p9k:Ld (2.96) BS01 rna N/A N/A P62899 41315256
    1044264 9p9k:Le (2.96) BS01 rna N/A GO:0002181 ... P62910 41315256
    1044265 9p9k:Le (2.96) BS02 MG N/A GO:0002181 ... P62910 41315256
    1044266 9p9k:Lf (2.96) BS01 rna N/A GO:0002181 ... P18077 41315256
    1044267 9p9k:Lg (2.96) BS01 rna N/A GO:0002181 ... P49207 41315256
    1044268 9p9k:Lg (2.96) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1044269 9p9k:Lh (2.96) BS01 rna N/A GO:0000463 ... P42766 41315256
    1044270 9p9k:Lh (2.96) BS02 rna N/A GO:0000463 ... P42766 41315256
    1044271 9p9k:Li (2.96) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1044272 9p9k:Lj (2.96) BS01 rna N/A N/A P61927 41315256
    1044273 9p9k:Lj (2.96) BS02 rna N/A N/A P61927 41315256
    1044274 9p9k:Lj (2.96) BS03 ZN N/A N/A P61927 41315256
    1044275 9p9k:Lk (2.96) BS01 rna N/A GO:0002181 ... P63173 41315256
    1044276 9p9k:Ll (2.96) BS01 rna N/A GO:0002181 ... P62891 41315256
    1044277 9p9k:Ll (2.96) BS02 rna N/A GO:0002181 ... P62891 41315256
    1044278 9p9k:Lm (2.96) BS01 rna N/A N/A P62987 41315256
    1044279 9p9k:Lm (2.96) BS02 ZN N/A N/A P62987 41315256
    1044280 9p9k:Lo (2.96) BS01 rna N/A GO:0002181 ... P83881 41315256
    1044281 9p9k:Lo (2.96) BS02 ZN N/A GO:0002181 ... P83881 41315256
    1044282 9p9k:Lp (2.96) BS01 rna N/A GO:0002181 ... P61513 41315256
    1044283 9p9k:Lp (2.96) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1044284 9p9k:Lr (2.96) BS01 rna N/A GO:0002181 ... P46779 41315256
    1044285 9p9k:P (2.96) BS01 rna N/A GO:0000054 ... P56537 41315256
    1044286 9p9n:A (1.28) BS01 MG N/A N/A P9WG83 41587996
    1044287 9p9n:B (1.28) BS01 MG N/A N/A P9WG83 41587996
    1044288 9p9o:A (1.12) BS01 VY9 N/A N/A P9WG83 41587996
    1044289 9p9o:A (1.12) BS02 FE N/A N/A P9WG83 41587996
    1044290 9p9o:B (1.12) BS01 VY9 N/A N/A P9WG83 41587996
    1044291 9p9o:B (1.12) BS02 FE N/A N/A P9WG83 41587996
    1044292 9p9p:A (1.48) BS01 MG N/A N/A P9WG83 41587996
    1044293 9p9p:B (1.48) BS01 MG N/A N/A P9WG83 41587996
    1044294 9p9u:A (3.27) BS01 6JS N/A N/A P00533 N/A
    1044295 9p9u:A (3.27) BS02 6JS N/A N/A P00533 N/A
    1044296 9p9v:A (4.4) BS01 ADP N/A GO:0004176 ... O76031 41593052
    1044297 9p9v:B (4.4) BS01 ADP N/A GO:0004176 ... O76031 41593052
    1044298 9p9v:C (4.4) BS01 ADP N/A GO:0004176 ... O76031 41593052
    1044299 9p9v:D (4.4) BS01 ADP N/A GO:0004176 ... O76031 41593052
    1044300 9p9v:E (4.4) BS01 ADP N/A GO:0004176 ... O76031 41593052
    1044301 9p9v:F (4.4) BS01 ADP N/A GO:0004176 ... O76031 41593052
    1044302 9pa7:CA (2.67) BS01 rna N/A GO:0003676 ... Q9UQ80 41315256
    1044303 9pa7:CF (2.67) BS01 rna N/A GO:0000049 ... P68104 41315256
    1044304 9pa7:CF (2.67) BS02 rna N/A GO:0000049 ... P68104 41315256
    1044305 9pa7:CI (2.67) BS01 rna N/A N/A P20290 41315256
    1044306 9pa7:LA (2.67) BS01 rna N/A GO:0002181 ... P62917 41315256
    1044307 9pa7:LA (2.67) BS02 MG N/A GO:0002181 ... P62917 41315256
    1044308 9pa7:LB (2.67) BS01 rna N/A GO:0002181 ... P39023 41315256
    1044309 9pa7:LC (2.67) BS01 rna N/A N/A P36578 41315256
    1044310 9pa7:LC (2.67) BS02 rna N/A N/A P36578 41315256
    1044311 9pa7:LD (2.67) BS01 rna N/A GO:0000027 ... P46777 41315256
    1044312 9pa7:LD (2.67) BS02 rna N/A GO:0000027 ... P46777 41315256
    1044313 9pa7:LE (2.67) BS01 rna N/A N/A Q02878 41315256
    1044314 9pa7:LF (2.67) BS01 rna N/A GO:0000463 ... P18124 41315256
    1044315 9pa7:LF (2.67) BS02 rna N/A GO:0000463 ... P18124 41315256
    1044316 9pa7:LG (2.67) BS01 rna N/A GO:0000470 ... P62424 41315256
    1044317 9pa7:LG (2.67) BS02 rna N/A GO:0000470 ... P62424 41315256
    1044318 9pa7:LH (2.67) BS01 rna N/A GO:0002181 ... P32969 41315256
    1044319 9pa7:LI (2.67) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1044320 9pa7:LI (2.67) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1044321 9pa7:LI (2.67) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1044322 9pa7:LJ (2.67) BS01 rna N/A GO:0000027 ... P62913 41315256
    1044323 9pa7:LJ (2.67) BS02 rna N/A GO:0000027 ... P62913 41315256
    1044324 9pa7:LJ (2.67) BS03 rna N/A GO:0000027 ... P62913 41315256
    1044325 9pa7:LL (2.67) BS01 rna N/A GO:0002181 ... P26373 41315256
    1044326 9pa7:LL (2.67) BS02 rna N/A GO:0002181 ... P26373 41315256
    1044327 9pa7:LM (2.67) BS01 rna N/A N/A P50914 41315256
    1044328 9pa7:LN (2.67) BS01 rna N/A GO:0002181 ... P61313 41315256
    1044329 9pa7:LN (2.67) BS02 rna N/A GO:0002181 ... P61313 41315256
    1044330 9pa7:LO (2.67) BS01 rna N/A GO:0002181 ... P40429 41315256
    1044331 9pa7:LP (2.67) BS01 rna N/A N/A P18621 41315256
    1044332 9pa7:LP (2.67) BS02 rna N/A N/A P18621 41315256
    1044333 9pa7:LQ (2.67) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1044334 9pa7:LR (2.67) BS01 rna N/A GO:0002181 ... P84098 41315256
    1044335 9pa7:LR (2.67) BS02 rna N/A GO:0002181 ... P84098 41315256
    1044336 9pa7:LS (2.67) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1044337 9pa7:LS (2.67) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1044338 9pa7:LT (2.67) BS01 rna N/A GO:0001650 ... P46778 41315256
    1044339 9pa7:LT (2.67) BS02 rna N/A GO:0001650 ... P46778 41315256
    1044340 9pa7:LU (2.67) BS01 rna N/A N/A Q7Z4W8 41315256
    1044341 9pa7:LV (2.67) BS01 rna N/A GO:0000122 ... P62829 41315256
    1044342 9pa7:LW (2.67) BS01 rna N/A N/A A0A994J4A5 41315256
    1044343 9pa7:LW (2.67) BS02 rna N/A N/A A0A994J4A5 41315256
    1044344 9pa7:LX (2.67) BS01 rna N/A N/A P62750 41315256
    1044345 9pa7:LX (2.67) BS02 rna N/A N/A P62750 41315256
    1044346 9pa7:LY (2.67) BS01 rna N/A GO:0002181 ... P61254 41315256
    1044347 9pa7:LY (2.67) BS02 rna N/A GO:0002181 ... P61254 41315256
    1044348 9pa7:LZ (2.67) BS01 rna N/A GO:0002181 ... P61353 41315256
    1044349 9pa7:La (2.67) BS01 rna N/A GO:0002181 ... P46776 41315256
    1044350 9pa7:Lb (2.67) BS01 rna N/A N/A P47914 41315256
    1044351 9pa7:Lc (2.67) BS01 rna N/A N/A P62888 41315256
    1044352 9pa7:Ld (2.67) BS01 rna N/A N/A P62899 41315256
    1044353 9pa7:Le (2.67) BS01 rna N/A GO:0002181 ... P62910 41315256
    1044354 9pa7:Le (2.67) BS02 MG N/A GO:0002181 ... P62910 41315256
    1044355 9pa7:Lf (2.67) BS01 rna N/A GO:0002181 ... P18077 41315256
    1044356 9pa7:Lg (2.67) BS01 rna N/A GO:0002181 ... P49207 41315256
    1044357 9pa7:Lg (2.67) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1044358 9pa7:Lh (2.67) BS01 rna N/A GO:0000463 ... P42766 41315256
    1044359 9pa7:Lh (2.67) BS02 rna N/A GO:0000463 ... P42766 41315256
    1044360 9pa7:Li (2.67) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1044361 9pa7:Lj (2.67) BS01 rna N/A N/A P61927 41315256
    1044362 9pa7:Lj (2.67) BS02 rna N/A N/A P61927 41315256
    1044363 9pa7:Lj (2.67) BS03 ZN N/A N/A P61927 41315256
    1044364 9pa7:Lk (2.67) BS01 rna N/A GO:0002181 ... P63173 41315256
    1044365 9pa7:Ll (2.67) BS01 rna N/A GO:0002181 ... P62891 41315256
    1044366 9pa7:Ll (2.67) BS02 rna N/A GO:0002181 ... P62891 41315256
    1044367 9pa7:Lm (2.67) BS01 rna N/A N/A P62987 41315256
    1044368 9pa7:Lm (2.67) BS02 ZN N/A N/A P62987 41315256
    1044369 9pa7:Lo (2.67) BS01 rna N/A GO:0002181 ... P83881 41315256
    1044370 9pa7:Lo (2.67) BS02 rna N/A GO:0002181 ... P83881 41315256
    1044371 9pa7:Lo (2.67) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1044372 9pa7:Lp (2.67) BS01 rna N/A GO:0002181 ... P61513 41315256
    1044373 9pa7:Lp (2.67) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1044374 9pa7:Lr (2.67) BS01 rna N/A GO:0002181 ... P46779 41315256
    1044375 9pa7:Ls (2.67) BS01 rna N/A N/A P05388 41315256
    1044376 9pa7:Lt (2.67) BS01 rna N/A N/A P30050 41315256
    1044377 9pa7:SA (2.67) BS01 rna N/A N/A P08865 41315256
    1044378 9pa7:SB (2.67) BS01 rna N/A N/A P61247 41315256
    1044379 9pa7:SC (2.67) BS01 rna N/A N/A P15880 41315256
    1044380 9pa7:SD (2.67) BS01 rna N/A GO:0001228 ... P23396 41315256
    1044381 9pa7:SE (2.67) BS01 rna N/A GO:0002181 ... P62701 41315256
    1044382 9pa7:SF (2.67) BS01 rna N/A GO:0002181 ... P46782 41315256
    1044383 9pa7:SG (2.67) BS01 rna N/A GO:0002181 ... P62753 41315256
    1044384 9pa7:SH (2.67) BS01 rna N/A GO:0002181 ... P62081 41315256
    1044385 9pa7:SI (2.67) BS01 rna N/A GO:0002181 ... P62241 41315256
    1044386 9pa7:SI (2.67) BS02 rna N/A GO:0002181 ... P62241 41315256
    1044387 9pa7:SJ (2.67) BS01 rna N/A GO:0002181 ... P46781 41315256
    1044388 9pa7:SK (2.67) BS01 rna N/A N/A P46783 41315256
    1044389 9pa7:SL (2.67) BS01 rna N/A GO:0002181 ... P62280 41315256
    1044390 9pa7:SM (2.67) BS01 rna N/A GO:0002181 ... P25398 41315256
    1044391 9pa7:SN (2.67) BS01 rna N/A GO:0000462 ... P62277 41315256
    1044392 9pa7:SN (2.67) BS02 rna N/A GO:0000462 ... P62277 41315256
    1044393 9pa7:SO (2.67) BS01 rna N/A GO:0000028 ... P62263 41315256
    1044394 9pa7:SP (2.67) BS01 rna N/A N/A P62841 41315256
    1044395 9pa7:SQ (2.67) BS01 rna N/A GO:0000462 ... P62249 41315256
    1044396 9pa7:SR (2.67) BS01 rna N/A GO:0002181 ... P08708 41315256
    1044397 9pa7:SS (2.67) BS01 rna N/A GO:0002181 ... P62269 41315256
    1044398 9pa7:ST (2.67) BS01 rna N/A GO:0000028 ... P39019 41315256
    1044399 9pa7:SU (2.67) BS01 rna N/A N/A P60866 41315256
    1044400 9pa7:SW (2.67) BS01 rna N/A GO:0002181 ... P62244 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).