SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1044401 9pa7:SX (2.67) BS01 rna N/A GO:0002181 ... P62266 41315256
    1044402 9pa7:SY (2.67) BS01 rna N/A GO:0002181 ... P62847 41315256
    1044403 9pa7:SZ (2.67) BS01 rna N/A N/A P62851 41315256
    1044404 9pa7:Sa (2.67) BS01 rna N/A N/A P62854 41315256
    1044405 9pa7:Sa (2.67) BS02 ZN N/A N/A P62854 41315256
    1044406 9pa7:Sb (2.67) BS01 rna N/A GO:0002181 ... P42677 41315256
    1044407 9pa7:Sc (2.67) BS01 rna N/A GO:0000028 ... P62857 41315256
    1044408 9pa7:Sd (2.67) BS01 rna N/A GO:0002181 ... P62273 41315256
    1044409 9pa7:Sd (2.67) BS02 ZN N/A GO:0002181 ... P62273 41315256
    1044410 9pa7:Se (2.67) BS01 rna N/A N/A P62861 41315256
    1044411 9pa7:Sf (2.67) BS01 rna N/A N/A P62979 41315256
    1044412 9pa7:Sg (2.67) BS01 rna N/A GO:0001891 ... P63244 41315256
    1044413 9pa8:F (3.1) BS01 BCT N/A N/A N/A N/A
    1044414 9pa8:F (3.1) BS02 BCT N/A N/A N/A N/A
    1044415 9pa8:F (3.1) BS03 FE N/A N/A N/A N/A
    1044416 9pa8:F (3.1) BS04 FE N/A N/A N/A N/A
    1044417 9pa9:A (1.83) BS01 A1CHF N/A N/A P0DTD1 41650964
    1044418 9paa:A (1.41) BS01 A1CHF N/A N/A P0C6X1 41650964
    1044419 9paa:B (1.41) BS01 A1CHF N/A N/A P0C6X1 41650964
    1044420 9pac:A (2.28) BS01 A1CHF N/A N/A K9N7C7 41650964
    1044421 9pac:B (2.28) BS01 A1CHF N/A N/A K9N7C7 41650964
    1044422 9pac:C (2.28) BS01 A1CHF N/A N/A K9N7C7 41650964
    1044423 9pad:A (1.4) BS01 A1CHF N/A N/A A0A1P8SSX4 41650964
    1044424 9pad:B (1.4) BS01 A1CHF N/A N/A A0A1P8SSX4 41650964
    1044425 9pae:A (2.31) BS01 A1CHF N/A N/A U3M6R3 41650964
    1044426 9pae:B (2.31) BS01 A1CHF N/A N/A U3M6R3 41650964
    1044427 9pae:C (2.31) BS01 A1CHF N/A N/A U3M6R3 41650964
    1044428 9pae:D (2.31) BS01 A1CHF N/A N/A U3M6R3 41650964
    1044429 9paf:A (3.82) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044430 9paf:A (3.82) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044431 9paf:B (3.82) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044432 9paf:B (3.82) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044433 9paf:C (3.82) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044434 9paf:C (3.82) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044435 9paf:D (3.82) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044436 9paf:D (3.82) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044437 9paf:E (3.82) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044438 9paf:E (3.82) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044439 9paf:F (3.82) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044440 9pag:A (3.62) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044441 9pag:A (3.62) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044442 9pag:B (3.62) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044443 9pag:B (3.62) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044444 9pag:B (3.62) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044445 9pag:C (3.62) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044446 9pag:C (3.62) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044447 9pag:D (3.62) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044448 9pag:D (3.62) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044449 9pag:D (3.62) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044450 9pag:E (3.62) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044451 9pag:E (3.62) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044452 9pag:E (3.62) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044453 9pag:F (3.62) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044454 9pag:F (3.62) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044455 9par:A (3.0) BS01 PT5 N/A N/A A0A5S8WF66 N/A
    1044456 9par:A (3.0) BS02 PT5 N/A N/A A0A5S8WF66 N/A
    1044457 9par:B (3.0) BS01 PT5 N/A N/A A0A5S8WF66 N/A
    1044458 9par:B (3.0) BS02 PT5 N/A N/A A0A5S8WF66 N/A
    1044459 9par:C (3.0) BS01 PT5 N/A N/A A0A5S8WF66 N/A
    1044460 9par:C (3.0) BS02 PT5 N/A N/A A0A5S8WF66 N/A
    1044461 9par:D (3.0) BS01 PT5 N/A N/A A0A5S8WF66 N/A
    1044462 9par:D (3.0) BS02 PT5 N/A N/A A0A5S8WF66 N/A
    1044463 9pas:A (1.55) BS01 VVO N/A N/A P9WG83 41587996
    1044464 9pas:B (1.55) BS01 VVO N/A N/A P9WG83 41587996
    1044465 9pas:B (1.55) BS02 VY9 N/A N/A P9WG83 41587996
    1044466 9pau:A (1.7) BS01 VVO N/A N/A P9WG83 41587996
    1044467 9pau:B (1.7) BS01 7UC N/A N/A P9WG83 41587996
    1044468 9pau:B (1.7) BS02 VVO N/A N/A P9WG83 41587996
    1044469 9pax:A (1.25) BS01 MG N/A N/A P9WG83 41587996
    1044470 9pax:B (1.25) BS01 MG N/A N/A P9WG83 41587996
    1044471 9pay:A (2.0) BS01 VY9 N/A N/A P9WG83 41587996
    1044472 9pay:A (2.0) BS02 VVO N/A N/A P9WG83 41587996
    1044473 9pay:B (2.0) BS01 VY9 N/A N/A P9WG83 41587996
    1044474 9pay:B (2.0) BS02 VVO N/A N/A P9WG83 41587996
    1044475 9pb5:A (3.5) BS01 XUQ N/A N/A Q7Z2W7 N/A
    1044476 9pb5:B (3.5) BS01 XUQ N/A N/A Q7Z2W7 N/A
    1044477 9pb5:C (3.5) BS01 XUQ N/A N/A Q7Z2W7 N/A
    1044478 9pb5:D (3.5) BS01 XUQ N/A N/A Q7Z2W7 N/A
    1044479 9pb9:A (3.45) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044480 9pb9:A (3.45) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044481 9pb9:B (3.45) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044482 9pb9:B (3.45) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044483 9pb9:C (3.45) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044484 9pb9:C (3.45) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044485 9pb9:D (3.45) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044486 9pb9:D (3.45) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044487 9pb9:E (3.45) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044488 9pb9:E (3.45) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044489 9pb9:F (3.45) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044490 9pb9:F (3.45) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044491 9pba:A (3.47) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044492 9pba:A (3.47) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044493 9pba:B (3.47) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044494 9pba:B (3.47) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044495 9pba:B (3.47) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044496 9pba:C (3.47) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044497 9pba:C (3.47) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044498 9pba:D (3.47) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044499 9pba:D (3.47) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044500 9pba:E (3.47) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044501 9pba:E (3.47) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044502 9pba:F (3.47) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044503 9pba:F (3.47) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044504 9pbe:CI (2.19) BS01 rna N/A N/A P20290 41315256
    1044505 9pbe:LA (2.19) BS01 rna N/A GO:0002181 ... P62917 41315256
    1044506 9pbe:LA (2.19) BS02 MG N/A GO:0002181 ... P62917 41315256
    1044507 9pbe:LB (2.19) BS01 rna N/A GO:0002181 ... P39023 41315256
    1044508 9pbe:LC (2.19) BS01 rna N/A N/A P36578 41315256
    1044509 9pbe:LC (2.19) BS02 rna N/A N/A P36578 41315256
    1044510 9pbe:LD (2.19) BS01 rna N/A GO:0000027 ... P46777 41315256
    1044511 9pbe:LD (2.19) BS02 rna N/A GO:0000027 ... P46777 41315256
    1044512 9pbe:LE (2.19) BS01 rna N/A N/A Q02878 41315256
    1044513 9pbe:LF (2.19) BS01 rna N/A GO:0000463 ... P18124 41315256
    1044514 9pbe:LF (2.19) BS02 rna N/A GO:0000463 ... P18124 41315256
    1044515 9pbe:LG (2.19) BS01 rna N/A GO:0000470 ... P62424 41315256
    1044516 9pbe:LG (2.19) BS02 rna N/A GO:0000470 ... P62424 41315256
    1044517 9pbe:LH (2.19) BS01 rna N/A GO:0002181 ... P32969 41315256
    1044518 9pbe:LI (2.19) BS01 rna N/A GO:0000027 ... Q96L21 41315256
    1044519 9pbe:LI (2.19) BS02 rna N/A GO:0000027 ... Q96L21 41315256
    1044520 9pbe:LI (2.19) BS03 rna N/A GO:0000027 ... Q96L21 41315256
    1044521 9pbe:LJ (2.19) BS01 rna N/A GO:0000027 ... P62913 41315256
    1044522 9pbe:LJ (2.19) BS02 rna N/A GO:0000027 ... P62913 41315256
    1044523 9pbe:LJ (2.19) BS03 rna N/A GO:0000027 ... P62913 41315256
    1044524 9pbe:LL (2.19) BS01 rna N/A GO:0002181 ... P26373 41315256
    1044525 9pbe:LL (2.19) BS02 rna N/A GO:0002181 ... P26373 41315256
    1044526 9pbe:LM (2.19) BS01 rna N/A N/A P50914 41315256
    1044527 9pbe:LN (2.19) BS01 rna N/A GO:0002181 ... P61313 41315256
    1044528 9pbe:LN (2.19) BS02 rna N/A GO:0002181 ... P61313 41315256
    1044529 9pbe:LO (2.19) BS01 rna N/A GO:0002181 ... P40429 41315256
    1044530 9pbe:LP (2.19) BS01 rna N/A N/A P18621 41315256
    1044531 9pbe:LP (2.19) BS02 rna N/A N/A P18621 41315256
    1044532 9pbe:LQ (2.19) BS01 rna N/A GO:0002181 ... Q07020 41315256
    1044533 9pbe:LR (2.19) BS01 rna N/A GO:0002181 ... P84098 41315256
    1044534 9pbe:LR (2.19) BS02 rna N/A GO:0002181 ... P84098 41315256
    1044535 9pbe:LS (2.19) BS01 rna N/A GO:0002181 ... Q02543 41315256
    1044536 9pbe:LS (2.19) BS02 rna N/A GO:0002181 ... Q02543 41315256
    1044537 9pbe:LT (2.19) BS01 rna N/A GO:0001650 ... P46778 41315256
    1044538 9pbe:LT (2.19) BS02 rna N/A GO:0001650 ... P46778 41315256
    1044539 9pbe:LU (2.19) BS01 rna N/A N/A Q7Z4W8 41315256
    1044540 9pbe:LV (2.19) BS01 rna N/A GO:0000122 ... P62829 41315256
    1044541 9pbe:LW (2.19) BS01 rna N/A N/A A0A994J4A5 41315256
    1044542 9pbe:LW (2.19) BS02 rna N/A N/A A0A994J4A5 41315256
    1044543 9pbe:LX (2.19) BS01 rna N/A N/A P62750 41315256
    1044544 9pbe:LX (2.19) BS02 rna N/A N/A P62750 41315256
    1044545 9pbe:LY (2.19) BS01 rna N/A GO:0002181 ... P61254 41315256
    1044546 9pbe:LY (2.19) BS02 rna N/A GO:0002181 ... P61254 41315256
    1044547 9pbe:LZ (2.19) BS01 rna N/A GO:0002181 ... P61353 41315256
    1044548 9pbe:La (2.19) BS01 rna N/A GO:0002181 ... P46776 41315256
    1044549 9pbe:Lb (2.19) BS01 rna N/A N/A P47914 41315256
    1044550 9pbe:Lc (2.19) BS01 rna N/A N/A P62888 41315256
    1044551 9pbe:Ld (2.19) BS01 rna N/A N/A P62899 41315256
    1044552 9pbe:Le (2.19) BS01 rna N/A GO:0002181 ... P62910 41315256
    1044553 9pbe:Le (2.19) BS02 MG N/A GO:0002181 ... P62910 41315256
    1044554 9pbe:Lf (2.19) BS01 rna N/A GO:0002181 ... P18077 41315256
    1044555 9pbe:Lg (2.19) BS01 rna N/A GO:0002181 ... P49207 41315256
    1044556 9pbe:Lg (2.19) BS02 ZN N/A GO:0002181 ... P49207 41315256
    1044557 9pbe:Lh (2.19) BS01 rna N/A GO:0000463 ... P42766 41315256
    1044558 9pbe:Lh (2.19) BS02 rna N/A GO:0000463 ... P42766 41315256
    1044559 9pbe:Li (2.19) BS01 rna N/A GO:0002181 ... Q9Y3U8 41315256
    1044560 9pbe:Lj (2.19) BS01 rna N/A N/A P61927 41315256
    1044561 9pbe:Lj (2.19) BS02 rna N/A N/A P61927 41315256
    1044562 9pbe:Lj (2.19) BS03 ZN N/A N/A P61927 41315256
    1044563 9pbe:Lk (2.19) BS01 rna N/A GO:0002181 ... P63173 41315256
    1044564 9pbe:Ll (2.19) BS01 rna N/A GO:0002181 ... P62891 41315256
    1044565 9pbe:Ll (2.19) BS02 rna N/A GO:0002181 ... P62891 41315256
    1044566 9pbe:Lm (2.19) BS01 rna N/A N/A P62987 41315256
    1044567 9pbe:Lm (2.19) BS02 ZN N/A N/A P62987 41315256
    1044568 9pbe:Lo (2.19) BS01 rna N/A GO:0002181 ... P83881 41315256
    1044569 9pbe:Lo (2.19) BS02 rna N/A GO:0002181 ... P83881 41315256
    1044570 9pbe:Lo (2.19) BS03 ZN N/A GO:0002181 ... P83881 41315256
    1044571 9pbe:Lp (2.19) BS01 rna N/A GO:0002181 ... P61513 41315256
    1044572 9pbe:Lp (2.19) BS02 ZN N/A GO:0002181 ... P61513 41315256
    1044573 9pbe:Lr (2.19) BS01 rna N/A GO:0002181 ... P46779 41315256
    1044574 9pbe:Ls (2.19) BS01 rna N/A N/A P05388 41315256
    1044575 9pbe:Lt (2.19) BS01 rna N/A N/A P30050 41315256
    1044576 9pbe:SA (2.19) BS01 rna N/A N/A P08865 41315256
    1044577 9pbe:SB (2.19) BS01 rna N/A N/A P61247 41315256
    1044578 9pbe:SC (2.19) BS01 rna N/A N/A P15880 41315256
    1044579 9pbe:SD (2.19) BS01 rna N/A GO:0001228 ... P23396 41315256
    1044580 9pbe:SE (2.19) BS01 rna N/A GO:0002181 ... P62701 41315256
    1044581 9pbe:SF (2.19) BS01 rna N/A GO:0002181 ... P46782 41315256
    1044582 9pbe:SG (2.19) BS01 rna N/A GO:0002181 ... P62753 41315256
    1044583 9pbe:SH (2.19) BS01 rna N/A GO:0002181 ... P62081 41315256
    1044584 9pbe:SI (2.19) BS01 rna N/A GO:0002181 ... P62241 41315256
    1044585 9pbe:SI (2.19) BS02 rna N/A GO:0002181 ... P62241 41315256
    1044586 9pbe:SJ (2.19) BS01 rna N/A GO:0002181 ... P46781 41315256
    1044587 9pbe:SK (2.19) BS01 rna N/A N/A P46783 41315256
    1044588 9pbe:SL (2.19) BS01 rna N/A GO:0002181 ... P62280 41315256
    1044589 9pbe:SM (2.19) BS01 rna N/A GO:0002181 ... P25398 41315256
    1044590 9pbe:SN (2.19) BS01 rna N/A GO:0000462 ... P62277 41315256
    1044591 9pbe:SN (2.19) BS02 rna N/A GO:0000462 ... P62277 41315256
    1044592 9pbe:SO (2.19) BS01 rna N/A GO:0000028 ... P62263 41315256
    1044593 9pbe:SP (2.19) BS01 rna N/A N/A P62841 41315256
    1044594 9pbe:SQ (2.19) BS01 rna N/A GO:0000462 ... P62249 41315256
    1044595 9pbe:SR (2.19) BS01 rna N/A GO:0002181 ... P08708 41315256
    1044596 9pbe:SS (2.19) BS01 rna N/A GO:0002181 ... P62269 41315256
    1044597 9pbe:ST (2.19) BS01 rna N/A GO:0000028 ... P39019 41315256
    1044598 9pbe:SU (2.19) BS01 rna N/A N/A P60866 41315256
    1044599 9pbe:SW (2.19) BS01 rna N/A GO:0002181 ... P62244 41315256
    1044600 9pbe:SX (2.19) BS01 rna N/A GO:0002181 ... P62266 41315256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).