SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1044601 9pbe:SY (2.19) BS01 rna N/A GO:0002181 ... P62847 41315256
    1044602 9pbe:SZ (2.19) BS01 rna N/A N/A P62851 41315256
    1044603 9pbe:Sa (2.19) BS01 rna N/A N/A P62854 41315256
    1044604 9pbe:Sa (2.19) BS02 ZN N/A N/A P62854 41315256
    1044605 9pbe:Sb (2.19) BS01 rna N/A GO:0002181 ... P42677 41315256
    1044606 9pbe:Sc (2.19) BS01 rna N/A GO:0000028 ... P62857 41315256
    1044607 9pbe:Sd (2.19) BS01 rna N/A GO:0002181 ... P62273 41315256
    1044608 9pbe:Sd (2.19) BS02 ZN N/A GO:0002181 ... P62273 41315256
    1044609 9pbe:Se (2.19) BS01 rna N/A N/A P62861 41315256
    1044610 9pbe:Sf (2.19) BS01 rna N/A N/A P62979 41315256
    1044611 9pbe:Sg (2.19) BS01 rna N/A GO:0001891 ... P63244 41315256
    1044612 9pbf:A (4.01) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044613 9pbf:A (4.01) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044614 9pbf:B (4.01) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044615 9pbf:B (4.01) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044616 9pbf:C (4.01) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044617 9pbf:C (4.01) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044618 9pbf:C (4.01) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044619 9pbf:D (4.01) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044620 9pbf:D (4.01) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044621 9pbf:E (4.01) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044622 9pbf:E (4.01) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044623 9pbf:F (4.01) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044624 9pbg:A (2.0) BS01 peptide N/A N/A A3F718 N/A
    1044625 9pbg:D (2.0) BS01 peptide N/A N/A N/A N/A
    1044626 9pbg:E (2.0) BS01 peptide N/A N/A N/A N/A
    1044627 9pbh:A (2.13) BS01 peptide N/A N/A N/A N/A
    1044628 9pbh:E (2.13) BS01 peptide N/A N/A N/A N/A
    1044629 9pbj:A (1.37) BS01 MG N/A N/A P9WG83 41587996
    1044630 9pbn:A (1.46) BS01 VY9 N/A N/A P9WG83 41587996
    1044631 9pbn:A (1.46) BS02 VVO N/A N/A P9WG83 41587996
    1044632 9pbn:B (1.46) BS01 VY9 N/A N/A P9WG83 41587996
    1044633 9pbn:B (1.46) BS02 VVO N/A N/A P9WG83 41587996
    1044634 9pbu:A (1.73) BS01 MG N/A N/A P9WG83 41587996
    1044635 9pbv:A (3.91) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044636 9pbv:A (3.91) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044637 9pbv:B (3.91) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044638 9pbv:B (3.91) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044639 9pbv:B (3.91) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044640 9pbv:C (3.91) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044641 9pbv:C (3.91) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044642 9pbv:C (3.91) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044643 9pbv:D (3.91) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044644 9pbv:D (3.91) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044645 9pbv:D (3.91) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044646 9pbv:E (3.91) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044647 9pbv:E (3.91) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044648 9pbv:F (3.91) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044649 9pbx:A (1.82) BS01 VVO N/A N/A P9WG83 41587996
    1044650 9pc3:A (3.69) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044651 9pc3:A (3.69) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044652 9pc3:B (3.69) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044653 9pc3:B (3.69) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044654 9pc3:C (3.69) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044655 9pc3:C (3.69) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044656 9pc3:C (3.69) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044657 9pc3:D (3.69) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044658 9pc3:D (3.69) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044659 9pc3:D (3.69) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044660 9pc3:E (3.69) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044661 9pc3:E (3.69) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044662 9pc3:E (3.69) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044663 9pc3:F (3.69) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044664 9pc3:F (3.69) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044665 9pc5:A (1.74) BS01 FE N/A N/A P9WG83 41587996
    1044666 9pc5:B (1.74) BS01 FE N/A N/A P9WG83 41587996
    1044667 9pc5:C (1.74) BS01 FE N/A N/A P9WG83 41587996
    1044668 9pc5:D (1.74) BS01 FE N/A N/A P9WG83 41587996
    1044669 9pc9:A (2.91) BS01 A1CHN N/A GO:0005783 ... Q7L0J3 40892927
    1044670 9pca:A (2.2) BS01 A1CHO N/A GO:0000387 ... O14744 40857667
    1044671 9pcb:A (3.42) BS01 A1CCA N/A GO:0005783 ... Q7L0J3 40892927
    1044672 9pcl:A (1.76) BS01 VY9 N/A N/A P9WG83 41587996
    1044673 9pcl:A (1.76) BS02 FE N/A N/A P9WG83 41587996
    1044674 9pcl:B (1.76) BS01 VY9 N/A N/A P9WG83 41587996
    1044675 9pcl:B (1.76) BS02 FE N/A N/A P9WG83 41587996
    1044676 9pcl:C (1.76) BS01 FE N/A N/A P9WG83 41587996
    1044677 9pcl:D (1.76) BS01 VY9 N/A N/A P9WG83 41587996
    1044678 9pcl:D (1.76) BS02 FE N/A N/A P9WG83 41587996
    1044679 9pcm:A (1.45) BS01 AKG N/A N/A P9WG83 41587996
    1044680 9pcm:A (1.45) BS02 VY9 N/A N/A P9WG83 41587996
    1044681 9pcm:A (1.45) BS03 FE N/A N/A P9WG83 41587996
    1044682 9pcm:B (1.45) BS01 VY9 N/A N/A P9WG83 41587996
    1044683 9pcm:B (1.45) BS02 FE N/A N/A P9WG83 41587996
    1044684 9pcn:A (1.36) BS01 VY9 N/A N/A P9WG83 41587996
    1044685 9pcn:A (1.36) BS02 VVO N/A N/A P9WG83 41587996
    1044686 9pcn:B (1.36) BS01 VY9 N/A N/A P9WG83 41587996
    1044687 9pcn:B (1.36) BS02 VVO N/A N/A P9WG83 41587996
    1044688 9pco:A (1.82) BS01 FE N/A N/A P9WG83 41587996
    1044689 9pco:B (1.82) BS01 FE N/A N/A P9WG83 41587996
    1044690 9pco:C (1.82) BS01 AKG N/A N/A P9WG83 41587996
    1044691 9pco:C (1.82) BS02 FE N/A N/A P9WG83 41587996
    1044692 9pco:D (1.82) BS01 FE N/A N/A P9WG83 41587996
    1044693 9pcq:A (2.3) BS01 ADP N/A N/A O00418 41432361
    1044694 9pcq:A (2.3) BS02 ADP N/A N/A O00418 41432361
    1044695 9pcq:A (2.3) BS03 MN N/A N/A O00418 41432361
    1044696 9pcq:A (2.3) BS04 ZN N/A N/A O00418 41432361
    1044697 9pcq:B00A (2.3) BS01 ADP N/A GO:0000922 ... P0DP23 41432361
    1044698 9pcq:B00A (2.3) BS02 CA N/A GO:0000922 ... P0DP23 41432361
    1044699 9pcq:B00A (2.3) BS03 CA N/A GO:0000922 ... P0DP23 41432361
    1044700 9pcq:B00A (2.3) BS04 MN N/A GO:0000922 ... P0DP23 41432361
    1044701 9pcs:A (1.5) BS01 PYR N/A GO:0005737 ... P9WP25 41022234
    1044702 9pcs:B (1.5) BS01 MG N/A GO:0005737 ... P9WP25 41022234
    1044703 9pcs:B (1.5) BS02 PYR N/A GO:0005737 ... P9WP25 41022234
    1044704 9pcs:C (1.5) BS01 MG N/A GO:0005737 ... P9WP25 41022234
    1044705 9pcs:C (1.5) BS02 PYR N/A GO:0005737 ... P9WP25 41022234
    1044706 9pcs:D (1.5) BS01 MG N/A GO:0005737 ... P9WP25 41022234
    1044707 9pcs:D (1.5) BS02 PYR N/A GO:0005737 ... P9WP25 41022234
    1044708 9pcs:E (1.5) BS01 MG N/A GO:0005737 ... P9WP25 41022234
    1044709 9pcs:E (1.5) BS02 PYR N/A GO:0005737 ... P9WP25 41022234
    1044710 9pcs:F (1.5) BS01 MG N/A GO:0005737 ... P9WP25 41022234
    1044711 9pcs:F (1.5) BS02 PYR N/A GO:0005737 ... P9WP25 41022234
    1044712 9pcs:G (1.5) BS01 MG N/A GO:0005737 ... P9WP25 41022234
    1044713 9pcs:G (1.5) BS02 PYR N/A GO:0005737 ... P9WP25 41022234
    1044714 9pcs:H (1.5) BS01 MG N/A GO:0005737 ... P9WP25 41022234
    1044715 9pcs:H (1.5) BS02 PYR N/A GO:0005737 ... P9WP25 41022234
    1044716 9pct:A (1.41) BS01 GLC N/A GO:0004252 ... P00761 N/A
    1044717 9pct:A (1.41) BS02 FRU N/A GO:0004252 ... P00761 N/A
    1044718 9pct:A (1.41) BS03 FRU N/A GO:0004252 ... P00761 N/A
    1044719 9pct:A (1.41) BS04 GLC N/A GO:0004252 ... P00761 N/A
    1044720 9pct:A (1.41) BS05 CA N/A GO:0004252 ... P00761 N/A
    1044721 9pcx:A (4.03) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044722 9pcx:A (4.03) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044723 9pcx:B (4.03) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044724 9pcx:B (4.03) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044725 9pcx:C (4.03) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044726 9pcx:C (4.03) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044727 9pcx:D (4.03) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044728 9pcx:D (4.03) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044729 9pcx:E (4.03) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044730 9pcx:E (4.03) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044731 9pcx:F (4.03) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044732 9pcx:F (4.03) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044733 9pcy:A (-1.00) BS01 CU ? GO:0005507 ... P00287 1920431
    1044734 9pcz:A (3.65) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044735 9pcz:A (3.65) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044736 9pcz:B (3.65) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044737 9pcz:B (3.65) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044738 9pcz:C (3.65) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044739 9pcz:C (3.65) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044740 9pcz:D (3.65) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044741 9pcz:D (3.65) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044742 9pcz:E (3.65) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044743 9pcz:E (3.65) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044744 9pcz:F (3.65) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044745 9pcz:F (3.65) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044746 9pd0:A (2.42) BS01 APC N/A N/A A0A2G9LI54 41034579
    1044747 9pd0:A (2.42) BS02 MG N/A N/A A0A2G9LI54 41034579
    1044748 9pd0:A (2.42) BS03 MG N/A N/A A0A2G9LI54 41034579
    1044749 9pd0:A (2.42) BS04 APC N/A N/A A0A2G9LI54 41034579
    1044750 9pd0:B (2.42) BS01 APC N/A N/A A0A2G9LI54 41034579
    1044751 9pd0:B (2.42) BS02 MG N/A N/A A0A2G9LI54 41034579
    1044752 9pd0:B (2.42) BS03 MG N/A N/A A0A2G9LI54 41034579
    1044753 9pd0:C (2.42) BS01 APC N/A N/A A0A2G9LI54 41034579
    1044754 9pd0:C (2.42) BS02 MG N/A N/A A0A2G9LI54 41034579
    1044755 9pd0:C (2.42) BS03 MG N/A N/A A0A2G9LI54 41034579
    1044756 9pd0:D (2.42) BS01 APC N/A N/A A0A2G9LI54 41034579
    1044757 9pd0:D (2.42) BS02 MG N/A N/A A0A2G9LI54 41034579
    1044758 9pd0:D (2.42) BS03 MG N/A N/A A0A2G9LI54 41034579
    1044759 9pd1:A (4.5) BS01 ADP N/A GO:0000149 ... P18708 40993127
    1044760 9pd1:A (4.5) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044761 9pd1:B (4.5) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044762 9pd1:B (4.5) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044763 9pd1:C (4.5) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044764 9pd1:C (4.5) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044765 9pd1:D (4.5) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044766 9pd1:D (4.5) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044767 9pd1:D (4.5) BS03 ATP N/A GO:0000149 ... P18708 40993127
    1044768 9pd1:E (4.5) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044769 9pd1:E (4.5) BS02 ATP N/A GO:0000149 ... P18708 40993127
    1044770 9pd1:F (4.5) BS01 ATP N/A GO:0000149 ... P18708 40993127
    1044771 9pd1:F (4.5) BS02 ADP N/A GO:0000149 ... P18708 40993127
    1044772 9pd3:A (3.3) BS01 peptide N/A GO:0000112 ... P19447 N/A
    1044773 9pd3:A (3.3) BS02 dna N/A GO:0000112 ... P19447 N/A
    1044774 9pd3:A (3.3) BS03 dna N/A GO:0000112 ... P19447 N/A
    1044775 9pd3:B (3.3) BS01 dna N/A GO:0000439 ... P18074 N/A
    1044776 9pd3:B (3.3) BS02 SF4 N/A GO:0000439 ... P18074 N/A
    1044777 9pd3:D (3.3) BS01 peptide N/A GO:0000438 ... Q92759 N/A
    1044778 9pd3:E (3.3) BS01 ZN N/A GO:0000438 ... Q13888 N/A
    1044779 9pd3:E (3.3) BS02 ZN N/A GO:0000438 ... Q13888 N/A
    1044780 9pd3:F (3.3) BS01 ZN N/A GO:0000438 ... Q13889 N/A
    1044781 9pd3:F (3.3) BS02 ZN N/A GO:0000438 ... Q13889 N/A
    1044782 9pd3:G (3.3) BS01 peptide N/A GO:0000439 ... Q6ZYL4 N/A
    1044783 9pd3:K (3.3) BS01 dna N/A GO:0000110 ... P23025 N/A
    1044784 9pd3:K (3.3) BS02 dna N/A GO:0000110 ... P23025 N/A
    1044785 9pd3:K (3.3) BS03 ZN N/A GO:0000110 ... P23025 N/A
    1044786 9pd3:N (3.3) BS01 dna N/A GO:0000228 ... P27694 N/A
    1044787 9pd3:N (3.3) BS02 ZN N/A GO:0000228 ... P27694 N/A
    1044788 9pd4:A (3.4) BS01 dna N/A GO:0000112 ... P19447 N/A
    1044789 9pd4:A (3.4) BS02 dna N/A GO:0000112 ... P19447 N/A
    1044790 9pd4:B (3.4) BS01 dna N/A GO:0000439 ... P18074 N/A
    1044791 9pd4:B (3.4) BS02 SF4 N/A GO:0000439 ... P18074 N/A
    1044792 9pd4:E (3.4) BS01 ZN N/A GO:0000438 ... Q13888 N/A
    1044793 9pd4:E (3.4) BS02 ZN N/A GO:0000438 ... Q13888 N/A
    1044794 9pd4:E (3.4) BS03 ZN N/A GO:0000438 ... Q13888 N/A
    1044795 9pd4:F (3.4) BS01 ZN N/A GO:0000438 ... Q13889 N/A
    1044796 9pd4:F (3.4) BS02 ZN N/A GO:0000438 ... Q13889 N/A
    1044797 9pd4:K (3.4) BS01 dna N/A GO:0000110 ... P23025 N/A
    1044798 9pd4:K (3.4) BS02 dna N/A GO:0000110 ... P23025 N/A
    1044799 9pd4:K (3.4) BS03 ZN N/A GO:0000110 ... P23025 N/A
    1044800 9pd4:N (3.4) BS01 dna N/A GO:0000228 ... P27694 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).